Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99785 * 2 1 4 4 O 1.21284 * 119.99763 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.50694 * 109.47040 * 179.97438 * 5 3 2 7 7 C 1.38467 * 120.01720 * 90.00505 * 6 5 3 8 8 F 1.35103 * 120.01436 * 359.95052 * 7 6 5 9 9 C 1.38438 * 119.96431 * 179.97438 * 7 6 5 10 10 C 1.38233 * 120.00084 * 359.97438 * 9 7 6 11 11 C 1.38203 * 120.03829 * 0.02562 * 10 9 7 12 12 C 1.38293 * 120.02554 * 269.97779 * 6 5 3 13 13 Cl 1.73600 * 119.99596 * 0.02562 * 12 6 5 14 14 C 1.46502 * 120.00131 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.88949 * 176.11439 * 14 2 1 16 16 C 1.55155 * 111.00380 * 299.99967 * 14 2 1 17 17 C 1.54324 * 102.94143 * 153.57675 * 16 14 2 18 18 N 1.47016 * 107.27127 * 337.80635 * 17 16 14 19 19 C 1.36937 * 125.64786 * 178.96990 * 18 17 16 20 20 H 1.08000 * 120.00226 * 174.79579 * 19 18 17 21 21 C 1.38812 * 120.00188 * 354.78549 * 19 18 17 22 22 N 1.31621 * 119.99560 * 7.06130 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 187.06049 * 21 19 18 24 24 H 1.48505 * 109.46944 * 94.99142 * 23 21 19 25 25 H 1.48502 * 109.47196 * 214.98776 * 23 21 19 26 26 H 1.48489 * 109.47221 * 334.99238 * 23 21 19 27 27 C 1.47423 * 108.70513 * 358.93925 * 18 17 16 28 28 H 1.09000 * 109.47474 * 89.99603 * 1 2 3 29 29 H 1.09009 * 109.47012 * 209.99857 * 1 2 3 30 30 H 1.09001 * 109.46871 * 329.99099 * 1 2 3 31 31 H 1.09007 * 109.46947 * 59.99963 * 5 3 2 32 32 H 1.08999 * 109.46894 * 299.99969 * 5 3 2 33 33 H 1.07997 * 120.00235 * 179.72145 * 9 7 6 34 34 H 1.07994 * 119.98219 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.98407 * 179.97438 * 11 10 9 36 36 H 1.09003 * 110.71934 * 271.93482 * 16 14 2 37 37 H 1.08994 * 110.72197 * 35.03194 * 16 14 2 38 38 H 1.09005 * 109.88292 * 97.22214 * 17 16 14 39 39 H 1.09004 * 109.88006 * 218.23641 * 17 16 14 40 40 H 0.97003 * 119.99807 * 179.97438 * 22 21 19 41 41 H 1.08998 * 110.36925 * 265.29470 * 27 18 17 42 42 H 1.09004 * 110.36650 * 142.96923 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6177 0.0011 7 6 2.8147 4.1448 -1.1976 8 9 2.3768 3.6318 -2.3683 9 6 3.7139 5.1973 -1.1959 10 6 4.1617 5.7219 0.0021 11 6 3.7125 5.1959 1.1986 12 6 2.8140 4.1434 1.1987 13 17 2.2503 3.4834 2.7021 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0973 -0.0695 16 6 1.8484 -2.1130 1.2535 17 6 2.1065 -3.5588 0.7795 18 7 2.0265 -3.5578 -0.6885 19 6 2.2164 -4.6452 -1.4989 20 1 2.0535 -4.5605 -2.5632 21 6 2.6184 -5.8563 -0.9525 22 7 2.6829 -5.9995 0.3543 23 14 3.0678 -7.2826 -2.0718 24 1 4.5368 -7.2976 -2.2890 25 1 2.6478 -8.5592 -1.4398 26 1 2.3761 -7.1251 -3.3763 27 6 1.7074 -2.1923 -1.1436 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 0.7590 2.5299 0.8909 32 1 0.7584 2.5302 -0.8891 33 1 4.0688 5.6060 -2.1304 34 1 4.8635 6.5427 0.0031 35 1 4.0632 5.6061 2.1340 36 1 2.5044 -1.8571 2.0855 37 1 0.8035 -1.9762 1.5318 38 1 3.0982 -3.8815 1.0965 39 1 1.3499 -4.2253 1.1937 40 1 2.9634 -6.8459 0.7361 41 1 0.6326 -2.0815 -1.2864 42 1 2.2391 -1.9666 -2.0681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033611241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -26.313420 kcal Electronic energy + Delta-G solvation = -27273.459466 eV Core-core repulsion = 23194.938842 eV Total energy + Delta-G solvation = -4078.520624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.18152 -40.22847 -39.17023 -37.29717 -36.74345 -34.79483 -33.30278 -32.04813 -30.74202 -29.34403 -28.32750 -27.27268 -26.42270 -24.38689 -23.19018 -22.56014 -20.48829 -20.11351 -18.79245 -18.02170 -17.27130 -17.16850 -16.95394 -16.27558 -15.90689 -15.53271 -15.21440 -15.04172 -14.62489 -14.21513 -13.92422 -13.79277 -13.63569 -13.22552 -13.16356 -12.77905 -12.64787 -12.38128 -12.34875 -12.03324 -11.89794 -11.73068 -11.66372 -11.64609 -11.14097 -10.94733 -10.83986 -10.75351 -10.28144 -10.08297 -9.83440 -9.74651 -9.67765 -9.09696 -8.99890 -8.58865 -8.34443 -6.83685 -5.72332 -3.05199 0.66420 0.72936 1.75022 2.73900 2.96282 3.27659 3.41717 3.46994 3.48570 3.92970 4.15715 4.39312 4.49786 4.51517 4.62924 4.84545 5.01492 5.05860 5.17103 5.30152 5.34475 5.43491 5.53954 5.55888 5.62270 5.67790 5.71965 5.73819 5.78138 5.84799 5.89702 6.21446 6.30088 6.37770 6.51483 6.59494 6.70650 6.96636 7.53835 7.57157 7.63249 7.82373 8.24209 8.31944 9.21204 9.81445 10.46988 11.39642 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.002678 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.895921 B =10451.499331 C =11035.795529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.600 5.600 3 C 0.519 3.481 4 O -0.533 6.533 5 C -0.108 4.108 6 C -0.089 4.089 7 C 0.126 3.874 8 F -0.129 7.129 9 C -0.149 4.149 10 C -0.080 4.080 11 C -0.121 4.121 12 C 0.003 3.997 13 Cl -0.052 7.052 14 C 0.124 3.876 15 H 0.106 0.894 16 C -0.152 4.152 17 C 0.179 3.821 18 N -0.603 5.603 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.132 3.868 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.043 0.957 40 H 0.253 0.747 41 H 0.022 0.978 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 26.225 2.499 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.332 5.332 3 C 0.306 3.694 4 O -0.410 6.410 5 C -0.148 4.148 6 C -0.092 4.092 7 C 0.106 3.894 8 F -0.107 7.107 9 C -0.168 4.168 10 C -0.098 4.098 11 C -0.140 4.140 12 C -0.024 4.024 13 Cl -0.023 7.023 14 C 0.020 3.980 15 H 0.124 0.876 16 C -0.191 4.191 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.004 3.996 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.023 25.885 2.613 26.192 hybrid contribution -0.012 -1.031 -0.600 1.193 sum -3.035 24.854 2.013 25.120 Atomic orbital electron populations 1.21823 0.79870 1.03200 1.02094 1.47774 1.06909 1.05911 1.72613 1.20158 0.87979 0.84676 0.76617 1.90713 1.13646 1.87110 1.49525 1.20714 0.97534 0.90427 1.06102 1.19151 1.00736 0.98225 0.91039 1.17276 0.96774 0.94752 0.80582 1.91531 1.87886 1.86080 1.45215 1.21222 0.98357 0.96906 1.00327 1.20943 0.98730 0.99445 0.90731 1.21080 0.97216 0.95978 0.99683 1.20512 0.98573 0.96568 0.86701 1.98390 1.87966 1.85332 1.30635 1.22460 0.97443 0.80913 0.97144 0.87602 1.23233 1.00460 0.98657 0.96778 1.21145 1.01019 0.88947 0.83499 1.44379 1.83338 1.03024 1.02220 1.19053 1.39079 0.87547 0.90087 0.90367 1.24832 1.01518 0.97919 0.96002 1.69975 1.53076 1.24757 1.08851 0.86108 0.78410 0.81803 0.79512 1.21562 1.21762 1.20614 1.21743 0.97059 0.85913 0.94836 0.92282 0.90126 0.91492 0.87047 0.87303 0.84012 0.83993 0.84180 0.91964 0.92131 0.93188 0.93861 0.93709 0.96049 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.85 59.85 0.53 1.37 16 2 N -0.60 -9.24 2.91 -171.47 -0.50 -9.74 16 3 C 0.52 8.10 7.67 -10.99 -0.08 8.02 16 4 O -0.53 -10.40 15.42 5.55 0.09 -10.31 16 5 C -0.11 -1.24 3.81 -29.04 -0.11 -1.35 16 6 C -0.09 -1.06 4.38 -104.52 -0.46 -1.52 16 7 C 0.13 1.45 7.24 -39.42 -0.29 1.17 16 8 F -0.13 -1.62 16.48 2.25 0.04 -1.58 16 9 C -0.15 -1.33 10.03 -39.51 -0.40 -1.73 16 10 C -0.08 -0.60 10.04 -39.60 -0.40 -1.00 16 11 C -0.12 -1.04 9.83 -39.54 -0.39 -1.43 16 12 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 13 Cl -0.05 -0.56 27.29 -51.86 -1.42 -1.98 16 14 C 0.12 2.37 3.45 -65.78 -0.23 2.14 16 15 H 0.11 2.29 7.02 -51.93 -0.36 1.92 16 16 C -0.15 -2.93 6.51 -24.90 -0.16 -3.09 16 17 C 0.18 4.40 5.38 -3.07 -0.02 4.38 16 18 N -0.60 -15.66 3.39 -170.07 -0.58 -16.24 16 19 C -0.23 -6.49 10.27 -15.06 -0.15 -6.65 16 20 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 21 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 22 N -0.92 -27.23 10.36 55.49 0.57 -26.65 16 23 Si 0.91 22.34 29.56 -169.99 -5.02 17.32 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 C 0.13 2.81 6.79 -2.53 -0.02 2.79 16 28 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.08 0.97 6.42 -51.92 -0.33 0.63 16 30 H 0.07 0.56 6.44 -51.93 -0.33 0.23 16 31 H 0.11 1.07 6.16 -51.92 -0.32 0.75 16 32 H 0.11 1.06 7.61 -51.93 -0.40 0.67 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.06 1.05 6.40 -51.93 -0.33 0.71 16 38 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 39 H 0.04 1.15 7.61 -51.93 -0.40 0.76 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.02 0.44 7.00 -51.93 -0.36 0.07 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -33.70 359.42 -9.21 -42.92 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.30 Total: -1.78 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.51 Total: 2.63 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.50 Total: -52.63 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.42 Total: -1.98 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.70 -9.21 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033611241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.604 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds