Wall clock time and date at job start Sat Apr 11 2020 05:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 119.99785 * 2 1 4 4 O 1.21284 * 119.99763 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00335 * 0.02562 * 3 2 1 6 6 C 1.50694 * 109.47040 * 179.97438 * 5 3 2 7 7 C 1.38467 * 120.01720 * 90.00505 * 6 5 3 8 8 F 1.35103 * 120.01436 * 359.95052 * 7 6 5 9 9 C 1.38438 * 119.96431 * 179.97438 * 7 6 5 10 10 C 1.38233 * 120.00084 * 359.97438 * 9 7 6 11 11 C 1.38203 * 120.03829 * 0.02562 * 10 9 7 12 12 C 1.38293 * 120.02554 * 269.97779 * 6 5 3 13 13 Cl 1.73600 * 119.99596 * 0.02562 * 12 6 5 14 14 C 1.46502 * 120.00131 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.88949 * 176.11439 * 14 2 1 16 16 C 1.55155 * 111.00380 * 299.99967 * 14 2 1 17 17 C 1.54324 * 102.94143 * 153.57675 * 16 14 2 18 18 N 1.47016 * 107.27127 * 337.80635 * 17 16 14 19 19 C 1.36937 * 125.64786 * 178.96990 * 18 17 16 20 20 H 1.08000 * 120.00226 * 174.79579 * 19 18 17 21 21 C 1.38812 * 120.00188 * 354.78549 * 19 18 17 22 22 N 1.31621 * 119.99560 * 7.06130 * 21 19 18 23 23 Si 1.86800 * 120.00175 * 187.06049 * 21 19 18 24 24 H 1.48505 * 109.46944 * 94.99142 * 23 21 19 25 25 H 1.48502 * 109.47196 * 214.98776 * 23 21 19 26 26 H 1.48489 * 109.47221 * 334.99238 * 23 21 19 27 27 C 1.47423 * 108.70513 * 358.93925 * 18 17 16 28 28 H 1.09000 * 109.47474 * 89.99603 * 1 2 3 29 29 H 1.09009 * 109.47012 * 209.99857 * 1 2 3 30 30 H 1.09001 * 109.46871 * 329.99099 * 1 2 3 31 31 H 1.09007 * 109.46947 * 59.99963 * 5 3 2 32 32 H 1.08999 * 109.46894 * 299.99969 * 5 3 2 33 33 H 1.07997 * 120.00235 * 179.72145 * 9 7 6 34 34 H 1.07994 * 119.98219 * 179.97438 * 10 9 7 35 35 H 1.07995 * 119.98407 * 179.97438 * 11 10 9 36 36 H 1.09003 * 110.71934 * 271.93482 * 16 14 2 37 37 H 1.08994 * 110.72197 * 35.03194 * 16 14 2 38 38 H 1.09005 * 109.88292 * 97.22214 * 17 16 14 39 39 H 1.09004 * 109.88006 * 218.23641 * 17 16 14 40 40 H 0.97003 * 119.99807 * 179.97438 * 22 21 19 41 41 H 1.08998 * 110.36925 * 265.29470 * 27 18 17 42 42 H 1.09004 * 110.36650 * 142.96923 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3646 3.6177 0.0011 7 6 2.8147 4.1448 -1.1976 8 9 2.3768 3.6318 -2.3683 9 6 3.7139 5.1973 -1.1959 10 6 4.1617 5.7219 0.0021 11 6 3.7125 5.1959 1.1986 12 6 2.8140 4.1434 1.1987 13 17 2.2503 3.4834 2.7021 14 6 2.1975 -1.2687 -0.0006 15 1 3.2717 -1.0973 -0.0695 16 6 1.8484 -2.1130 1.2535 17 6 2.1065 -3.5588 0.7795 18 7 2.0265 -3.5578 -0.6885 19 6 2.2164 -4.6452 -1.4989 20 1 2.0535 -4.5605 -2.5632 21 6 2.6184 -5.8563 -0.9525 22 7 2.6829 -5.9995 0.3543 23 14 3.0678 -7.2826 -2.0718 24 1 4.5368 -7.2976 -2.2890 25 1 2.6478 -8.5592 -1.4398 26 1 2.3761 -7.1251 -3.3763 27 6 1.7074 -2.1923 -1.1436 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 0.7590 2.5299 0.8909 32 1 0.7584 2.5302 -0.8891 33 1 4.0688 5.6060 -2.1304 34 1 4.8635 6.5427 0.0031 35 1 4.0632 5.6061 2.1340 36 1 2.5044 -1.8571 2.0855 37 1 0.8035 -1.9762 1.5318 38 1 3.0982 -3.8815 1.0965 39 1 1.3499 -4.2253 1.1937 40 1 2.9634 -6.8459 0.7361 41 1 0.6326 -2.0815 -1.2864 42 1 2.2391 -1.9666 -2.0681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033611241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:22 Heat of formation + Delta-G solvation = -45.870381 kcal Electronic energy + Delta-G solvation = -27274.307519 eV Core-core repulsion = 23194.938842 eV Total energy + Delta-G solvation = -4079.368677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03121 -41.37026 -40.09490 -38.90208 -37.50395 -36.28790 -34.40194 -33.75405 -31.43737 -31.18278 -29.67278 -28.44579 -27.73394 -26.29886 -23.91737 -23.48448 -22.08949 -21.81245 -20.09427 -18.95982 -18.78801 -18.48097 -17.94886 -17.36066 -16.83913 -16.70075 -16.50393 -16.33946 -15.93569 -15.76968 -15.26557 -14.69430 -14.58168 -14.35621 -14.28119 -14.13729 -13.99665 -13.95766 -13.60176 -13.41000 -13.08755 -12.94527 -12.77457 -12.70903 -12.44873 -12.38435 -12.31771 -12.11570 -12.02579 -11.89793 -11.82633 -11.52390 -10.99041 -10.72390 -9.86991 -9.73308 -9.67697 -8.93570 -7.89168 -5.24734 -0.04669 0.00670 0.99255 1.44363 1.47363 1.54775 1.55883 1.88716 2.43170 2.49453 3.20313 3.29872 3.35656 3.56451 3.65516 3.67709 3.88388 3.90376 3.98412 4.17434 4.20015 4.24714 4.32980 4.37426 4.50512 4.54004 4.62044 4.67184 4.79704 4.84330 4.90969 5.00667 5.02903 5.08577 5.12110 5.20839 5.40479 5.52995 5.59085 5.69560 5.70825 6.15205 6.38164 7.05637 7.10502 7.71708 8.36227 9.21588 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.002678 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.895921 B =10451.499331 C =11035.795529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.599 5.599 3 C 0.515 3.485 4 O -0.578 6.578 5 C -0.098 4.098 6 C -0.112 4.112 7 C 0.098 3.902 8 F -0.142 7.142 9 C -0.150 4.150 10 C -0.070 4.070 11 C -0.121 4.121 12 C -0.013 4.013 13 Cl -0.058 7.058 14 C 0.140 3.860 15 H 0.076 0.924 16 C -0.133 4.133 17 C 0.188 3.812 18 N -0.625 5.625 19 C -0.246 4.246 20 H 0.083 0.917 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.979 3.021 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.133 3.867 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.163 0.837 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.010 0.990 39 H 0.016 0.984 40 H 0.248 0.752 41 H 0.044 0.956 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 28.646 2.149 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C 0.305 3.695 4 O -0.458 6.458 5 C -0.137 4.137 6 C -0.114 4.114 7 C 0.079 3.921 8 F -0.121 7.121 9 C -0.169 4.169 10 C -0.088 4.088 11 C -0.140 4.140 12 C -0.040 4.040 13 Cl -0.029 7.029 14 C 0.035 3.965 15 H 0.094 0.906 16 C -0.172 4.172 17 C 0.063 3.937 18 N -0.352 5.352 19 C -0.375 4.375 20 H 0.100 0.900 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.807 3.193 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.190 1.190 27 C 0.007 3.993 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.145 0.855 33 H 0.181 0.819 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.810 28.348 2.247 28.691 hybrid contribution 0.246 -1.685 -0.503 1.775 sum -3.564 26.664 1.744 26.957 Atomic orbital electron populations 1.22144 0.77055 1.04932 1.03551 1.47792 1.08479 1.04418 1.72404 1.20900 0.87687 0.85754 0.75208 1.90688 1.15856 1.87787 1.51434 1.20701 0.97410 0.87789 1.07840 1.19265 1.01707 0.98773 0.91628 1.17638 0.98171 0.96111 0.80187 1.91489 1.88238 1.86483 1.45845 1.21591 0.97313 0.95973 1.02006 1.21411 0.98194 0.99574 0.89574 1.21475 0.96166 0.95092 1.01259 1.20735 0.99502 0.97505 0.86249 1.98381 1.88127 1.85573 1.30824 1.21905 0.96285 0.82472 0.95837 0.90615 1.23032 1.02362 0.94891 0.96895 1.20869 0.97885 0.91776 0.83176 1.44655 1.83394 1.04374 1.02735 1.19436 1.38782 0.88562 0.90709 0.89967 1.25692 1.01855 1.00628 0.97451 1.70185 1.53966 1.25047 1.10469 0.85054 0.77786 0.78277 0.78188 1.21635 1.21811 1.19044 1.21845 0.98020 0.84254 0.95157 0.90985 0.90361 0.87838 0.85022 0.85511 0.81943 0.80208 0.81971 0.91187 0.89325 0.97146 0.96598 0.94240 0.93808 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.29 8.85 127.77 1.13 2.42 16 2 N -0.60 -17.65 2.91 -814.81 -2.37 -20.02 16 3 C 0.52 15.63 7.67 87.66 0.67 16.30 16 4 O -0.58 -22.75 15.42 -3.04 -0.05 -22.80 16 5 C -0.10 -2.08 3.81 29.10 0.11 -1.97 16 6 C -0.11 -2.50 4.38 -19.80 -0.09 -2.59 16 7 C 0.10 2.16 7.24 22.37 0.16 2.32 16 8 F -0.14 -3.49 16.48 44.97 0.74 -2.75 16 9 C -0.15 -2.35 10.03 22.32 0.22 -2.12 16 10 C -0.07 -0.82 10.04 22.26 0.22 -0.60 16 11 C -0.12 -1.78 9.83 22.30 0.22 -1.56 16 12 C -0.01 -0.26 6.31 22.32 0.14 -0.12 16 13 Cl -0.06 -1.16 27.29 -2.72 -0.07 -1.23 16 14 C 0.14 5.36 3.45 46.38 0.16 5.52 16 15 H 0.08 3.38 7.02 -2.39 -0.02 3.37 16 16 C -0.13 -5.10 6.51 31.78 0.21 -4.89 16 17 C 0.19 9.58 5.38 86.73 0.47 10.05 16 18 N -0.62 -33.18 3.39 -691.98 -2.35 -35.52 16 19 C -0.25 -14.17 10.27 84.03 0.86 -13.31 16 20 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 21 C -0.06 -3.66 5.48 84.86 0.46 -3.19 16 22 N -0.95 -58.02 10.36 21.65 0.22 -57.80 16 23 Si 0.98 46.61 29.56 68.60 2.03 48.63 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.13 5.69 6.79 86.86 0.59 6.28 16 28 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 29 H 0.08 1.64 6.42 -2.38 -0.02 1.62 16 30 H 0.10 1.33 6.44 -2.39 -0.02 1.32 16 31 H 0.13 2.18 6.16 -2.38 -0.01 2.17 16 32 H 0.13 2.19 7.61 -2.39 -0.02 2.17 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.09 2.91 6.40 -2.39 -0.02 2.90 16 38 H 0.01 0.60 7.30 -2.38 -0.02 0.58 16 39 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 40 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.04 1.70 7.00 -2.39 -0.02 1.69 16 42 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -76.69 359.42 4.75 -71.94 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.05 Total: 7.00 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.55 Total: 12.55 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -4.50 Total: -113.34 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.80 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.74 Total: -2.75 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.23 kcal Total: -76.69 4.75 -71.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033611241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.073 kcal (2) G-P(sol) polarization free energy of solvation -76.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds