Wall clock time and date at job start Sat Apr 11 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.49805 * 2 1 4 4 C 1.53620 * 109.46025 * 120.20498 * 2 1 3 5 5 N 1.46927 * 108.54465 * 174.74266 * 4 2 1 6 6 C 1.34780 * 120.63242 * 126.36982 * 5 4 2 7 7 O 1.21569 * 119.99885 * 4.13057 * 6 5 4 8 8 C 1.47690 * 119.99844 * 183.86053 * 6 5 4 9 9 C 1.39654 * 120.16358 * 305.85409 * 8 6 5 10 10 C 1.37961 * 119.86895 * 179.77328 * 9 8 6 11 11 Cl 1.73601 * 119.90855 * 180.23431 * 10 9 8 12 12 C 1.38567 * 120.18989 * 0.50513 * 10 9 8 13 13 C 1.38191 * 120.32451 * 359.74671 * 12 10 9 14 14 C 1.38318 * 120.13547 * 359.97438 * 13 12 10 15 15 F 1.35093 * 120.09849 * 180.02562 * 14 13 12 16 16 C 1.46929 * 118.73774 * 306.09296 * 5 4 2 17 17 C 1.53196 * 108.77280 * 53.85751 * 16 5 4 18 18 C 1.53031 * 109.31599 * 305.36748 * 17 16 5 19 19 H 1.09004 * 109.45991 * 301.34650 * 18 17 16 20 20 N 1.46503 * 109.46245 * 181.38292 * 18 17 16 21 21 C 1.36939 * 119.99576 * 84.99730 * 20 18 17 22 22 H 1.08000 * 120.00258 * 0.02562 * 21 20 18 23 23 C 1.38808 * 119.99834 * 180.02562 * 21 20 18 24 24 N 1.31623 * 120.00279 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00089 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47170 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47310 * 120.00361 * 25 23 21 28 28 H 1.48497 * 109.47160 * 240.00128 * 25 23 21 29 29 H 1.09008 * 109.46968 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47103 * 300.06297 * 1 2 3 31 31 H 1.08993 * 109.47450 * 60.06891 * 1 2 3 32 32 H 1.08996 * 109.74179 * 55.00535 * 4 2 1 33 33 H 1.09006 * 109.66560 * 294.43228 * 4 2 1 34 34 H 1.08005 * 120.06375 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.83686 * 179.72046 * 12 10 9 36 36 H 1.08002 * 119.93031 * 180.02562 * 13 12 10 37 37 H 1.08995 * 109.58801 * 173.64610 * 16 5 4 38 38 H 1.08998 * 109.58568 * 294.07657 * 16 5 4 39 39 H 1.09000 * 109.49436 * 65.31770 * 17 16 5 40 40 H 1.08997 * 109.49938 * 185.40943 * 17 16 5 41 41 H 0.96999 * 120.00198 * 264.99885 * 20 18 17 42 42 H 0.96998 * 120.00005 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7287 1.2518 5 7 3.5054 -0.8282 1.1690 6 6 4.2820 -0.3852 2.1775 7 8 3.7720 0.0331 3.1988 8 6 5.7526 -0.4134 2.0443 9 6 6.4046 -1.6038 1.7154 10 6 7.7782 -1.6222 1.5880 11 17 8.5893 -3.1000 1.1732 12 6 8.5129 -0.4658 1.7956 13 6 7.8762 0.7153 2.1264 14 6 6.4992 0.7504 2.2521 15 9 5.8776 1.9055 2.5751 16 6 4.1060 -1.4254 -0.0316 17 6 3.5708 -0.6940 -1.2666 18 6 2.0408 -0.7227 -1.2485 19 1 1.6972 -1.7571 -1.2354 20 7 1.5258 -0.0528 -2.4453 21 6 1.3945 -0.7494 -3.6169 22 1 1.6701 -1.7928 -3.6585 23 6 0.9070 -0.1145 -4.7509 24 7 0.5715 1.1572 -4.7003 25 14 0.7271 -1.0650 -6.3489 26 1 1.1687 -2.4678 -6.1430 27 1 -0.6954 -1.0519 -6.7753 28 1 1.5643 -0.4311 -7.3989 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3634 0.5127 -0.8905 32 1 1.6097 -1.7283 1.2984 33 1 1.7637 -0.1662 2.1431 34 1 5.8344 -2.5072 1.5572 35 1 9.5883 -0.4877 1.6987 36 1 8.4551 1.6130 2.2864 37 1 5.1902 -1.3228 0.0126 38 1 3.8387 -2.4806 -0.0875 39 1 3.9153 0.3401 -1.2547 40 1 3.9334 -1.1883 -2.1678 41 1 1.2779 0.8843 -2.4078 42 1 0.2312 1.6009 -5.4929 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036104208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:26 Heat of formation + Delta-G solvation = -47.758953 kcal Electronic energy + Delta-G solvation = -27542.390246 eV Core-core repulsion = 23462.939675 eV Total energy + Delta-G solvation = -4079.450572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.22380 -40.65050 -39.02667 -37.66552 -36.78165 -34.73418 -33.10136 -31.78481 -31.46891 -30.70557 -29.35796 -26.65031 -25.38065 -24.09372 -23.14012 -22.68708 -21.70667 -20.33151 -19.38712 -17.90782 -17.58994 -17.11858 -17.06672 -16.46090 -15.86039 -15.67518 -14.97391 -14.88205 -14.67692 -14.19221 -13.95810 -13.80896 -13.77690 -13.60936 -13.36447 -13.19216 -12.77331 -12.47863 -12.37153 -11.96560 -11.85778 -11.63647 -11.57758 -11.44168 -11.21467 -10.97825 -10.85078 -10.69264 -10.45554 -10.19320 -10.06548 -9.79716 -9.66739 -9.54445 -9.02586 -8.93459 -8.59141 -6.99886 -5.80668 -3.09605 0.32594 0.52643 1.61721 2.41650 2.77532 3.09087 3.39906 3.45662 3.47985 3.72314 4.04532 4.20068 4.47638 4.54544 4.63841 4.95597 5.01709 5.16828 5.19691 5.23377 5.29774 5.46239 5.46835 5.48393 5.53993 5.56692 5.64204 5.73143 5.89887 6.02951 6.08879 6.13763 6.25960 6.31758 6.39444 6.45880 6.57205 6.76347 6.88092 7.00667 7.32104 7.66045 7.99852 8.37365 9.49044 10.06073 10.40932 11.41817 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.003212 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.440354 B = 8715.392733 C = 9871.534523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.120 3.880 5 N -0.594 5.594 6 C 0.561 3.439 7 O -0.529 6.529 8 C -0.144 4.144 9 C -0.052 4.052 10 C -0.053 4.053 11 Cl -0.055 7.055 12 C -0.064 4.064 13 C -0.145 4.145 14 C 0.152 3.848 15 F -0.118 7.118 16 C 0.097 3.903 17 C -0.151 4.151 18 C 0.184 3.816 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.043 0.957 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.687 -5.507 14.961 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.002 4.002 5 N -0.326 5.326 6 C 0.347 3.653 7 O -0.407 6.407 8 C -0.148 4.148 9 C -0.071 4.071 10 C -0.080 4.080 11 Cl -0.026 7.026 12 C -0.082 4.082 13 C -0.164 4.164 14 C 0.132 3.868 15 F -0.096 7.096 16 C -0.026 4.026 17 C -0.193 4.193 18 C 0.073 3.927 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 15.403 -5.504 15.312 22.405 hybrid contribution -0.089 -0.071 -1.109 1.115 sum 15.314 -5.575 14.203 21.618 Atomic orbital electron populations 1.21657 0.93935 1.01826 1.01946 1.21835 0.96711 1.00052 0.94442 0.91152 1.21886 0.77527 1.01158 0.99600 1.48096 1.07378 1.59407 1.17714 1.17899 0.85491 0.78235 0.83653 1.90812 1.74439 1.46929 1.28478 1.19940 0.94793 0.93642 1.06413 1.21081 0.92627 0.97664 0.95771 1.20769 0.92503 0.89040 1.05698 1.98401 1.79020 1.33305 1.91873 1.21057 1.00988 0.90011 0.96181 1.21092 0.92086 0.99933 1.03260 1.17671 0.90430 0.81377 0.97353 1.91594 1.82839 1.46004 1.89179 1.22151 0.98099 0.97541 0.84769 1.22696 1.00453 1.00435 0.95684 1.20196 0.90254 0.95754 0.86459 0.93307 1.42413 1.76413 1.11433 1.05781 1.19258 1.35920 0.94111 0.87698 0.91157 1.24726 1.02016 0.95995 0.98043 1.69669 1.49996 1.09471 1.28811 0.86163 0.77336 0.78876 0.84068 1.20578 1.21904 1.21927 0.92988 0.93754 0.90672 0.91104 0.89170 0.83195 0.83383 0.82960 0.90156 0.90931 0.92162 0.90375 0.78193 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.03 37.16 0.34 -1.83 16 2 C -0.11 -1.79 2.47 -90.28 -0.22 -2.01 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.72 5.74 -3.49 -0.02 1.70 16 5 N -0.59 -8.32 2.97 -173.67 -0.52 -8.83 16 6 C 0.56 8.37 6.92 -12.40 -0.09 8.28 16 7 O -0.53 -9.56 16.29 5.30 0.09 -9.47 16 8 C -0.14 -1.75 4.89 -104.92 -0.51 -2.27 16 9 C -0.05 -0.51 7.20 -39.15 -0.28 -0.79 16 10 C -0.05 -0.45 6.31 -39.56 -0.25 -0.70 16 11 Cl -0.05 -0.44 28.95 -51.86 -1.50 -1.94 16 12 C -0.06 -0.46 9.82 -39.48 -0.39 -0.85 16 13 C -0.14 -1.19 10.01 -39.57 -0.40 -1.59 16 14 C 0.15 1.79 7.27 -38.96 -0.28 1.50 16 15 F -0.12 -1.65 16.66 2.25 0.04 -1.61 16 16 C 0.10 1.23 5.52 -3.71 -0.02 1.21 16 17 C -0.15 -2.47 5.66 -26.61 -0.15 -2.62 16 18 C 0.18 3.38 2.19 -67.89 -0.15 3.23 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.72 -16.96 4.41 -53.39 -0.24 -17.20 16 21 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 25 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.41 7.36 -51.93 -0.38 1.03 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.34 7.03 -51.93 -0.36 0.98 16 34 H 0.15 1.28 7.36 -52.48 -0.39 0.89 16 35 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.08 0.90 4.73 -51.93 -0.25 0.65 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.38 9.83 7.50 -40.82 -0.31 9.52 16 42 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -31.11 362.97 -9.08 -40.19 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.46 Total: 6.88 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -2.67 Total: -3.59 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.03 Total: -52.68 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.11 -9.08 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036104208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.568 kcal (2) G-P(sol) polarization free energy of solvation -31.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds