Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.52178 * 2 1 4 4 C 1.53194 * 109.49652 * 120.08026 * 2 1 3 5 5 N 1.46923 * 108.77566 * 174.58815 * 4 2 1 6 6 C 1.34773 * 120.63038 * 126.41470 * 5 4 2 7 7 O 1.21573 * 120.00513 * 354.15700 * 6 5 4 8 8 C 1.47701 * 120.00149 * 174.16394 * 6 5 4 9 9 C 1.39649 * 120.15478 * 306.19376 * 8 6 5 10 10 C 1.37970 * 119.85808 * 179.71689 * 9 8 6 11 11 Cl 1.73602 * 119.90342 * 180.27714 * 10 9 8 12 12 C 1.38563 * 120.19555 * 0.55776 * 10 9 8 13 13 C 1.38191 * 120.32343 * 359.72169 * 12 10 9 14 14 C 1.38316 * 120.13308 * 359.97438 * 13 12 10 15 15 F 1.35098 * 120.09883 * 180.02562 * 14 13 12 16 16 C 1.46922 * 118.73812 * 306.38910 * 5 4 2 17 17 C 1.53194 * 108.77712 * 53.61023 * 16 5 4 18 18 C 1.53036 * 109.50014 * 239.91657 * 2 1 3 19 19 H 1.09007 * 109.46035 * 58.66176 * 18 2 1 20 20 N 1.46503 * 109.45747 * 298.70719 * 18 2 1 21 21 C 1.36945 * 119.99669 * 154.93346 * 20 18 2 22 22 H 1.07997 * 120.00147 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99527 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00258 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47296 * 59.99921 * 25 23 21 27 27 H 1.48501 * 109.46963 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47052 * 299.99790 * 25 23 21 29 29 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46807 * 300.08346 * 1 2 3 31 31 H 1.09001 * 109.46901 * 60.08355 * 1 2 3 32 32 H 1.08999 * 109.58693 * 54.79581 * 4 2 1 33 33 H 1.09000 * 109.70268 * 294.44382 * 4 2 1 34 34 H 1.07998 * 120.07508 * 359.97438 * 9 8 6 35 35 H 1.07995 * 119.83743 * 179.69627 * 12 10 9 36 36 H 1.07998 * 119.93467 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.58622 * 293.82314 * 16 5 4 38 38 H 1.09000 * 109.58684 * 173.39846 * 16 5 4 39 39 H 1.08997 * 109.49898 * 185.41217 * 17 16 5 40 40 H 1.08998 * 109.52503 * 65.32995 * 17 16 5 41 41 H 0.96994 * 120.00247 * 334.92432 * 20 18 2 42 42 H 0.96994 * 119.99575 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1697 6 6 4.2810 -0.3864 2.1784 7 8 3.7808 0.2010 3.1179 8 6 5.7399 -0.6147 2.1424 9 6 6.2438 -1.9048 1.9643 10 6 7.6076 -2.1103 1.9258 11 17 8.2353 -3.7127 1.6973 12 6 8.4777 -1.0423 2.0749 13 6 7.9876 0.2368 2.2573 14 6 6.6228 0.4591 2.2918 15 9 6.1444 1.7099 2.4697 16 6 4.1053 -1.4267 -0.0306 17 6 3.5709 -0.6951 -1.2659 18 6 2.0409 -0.7231 -1.2483 19 1 1.6582 -0.2245 -2.1389 20 7 1.5783 -2.1131 -1.2307 21 6 1.4469 -2.8059 -2.4046 22 1 1.6838 -2.3274 -3.3434 23 6 1.0091 -4.1231 -2.3879 24 7 0.7209 -4.7063 -1.2437 25 14 0.8291 -5.0678 -3.9892 26 1 2.1448 -5.1357 -4.6745 27 1 0.3501 -6.4436 -3.7011 28 1 -0.1501 -4.3754 -4.8651 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8908 32 1 1.6052 -1.7216 1.2981 33 1 1.7637 -0.1601 2.1402 34 1 5.5675 -2.7394 1.8528 35 1 9.5442 -1.2105 2.0487 36 1 8.6715 1.0647 2.3724 37 1 3.8375 -2.4818 -0.0866 38 1 5.1896 -1.3246 0.0139 39 1 3.9335 -1.1898 -2.1670 40 1 3.9159 0.3388 -1.2546 41 1 1.3653 -2.5427 -0.3875 42 1 0.4153 -5.6268 -1.2321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036104215.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = -47.363475 kcal Electronic energy + Delta-G solvation = -27976.876770 eV Core-core repulsion = 23897.443348 eV Total energy + Delta-G solvation = -4079.433422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.15984 -40.50181 -38.97578 -37.65317 -36.64458 -34.38546 -33.01355 -31.67473 -31.41849 -30.58685 -29.21394 -26.53630 -25.35763 -23.88627 -23.37787 -22.98756 -21.69962 -20.20303 -18.59163 -17.74757 -17.48090 -17.23928 -16.93247 -16.33207 -15.75150 -15.55113 -14.96163 -14.58465 -14.49027 -14.30827 -14.02176 -13.73838 -13.63601 -13.49563 -13.31978 -13.13161 -12.72643 -12.52838 -12.24086 -11.87699 -11.73691 -11.49104 -11.37352 -11.31539 -11.19791 -10.92109 -10.81838 -10.52587 -10.52152 -10.24819 -9.90313 -9.87920 -9.58157 -9.44642 -8.95547 -8.91802 -8.32874 -7.01264 -5.82008 -3.10591 0.42506 0.64091 1.75379 2.56765 2.95158 3.22285 3.40063 3.45541 3.46149 3.81376 4.20098 4.31794 4.54948 4.59440 4.75413 5.08085 5.16444 5.26738 5.30715 5.34903 5.48606 5.55058 5.55612 5.60544 5.68959 5.69384 5.77696 5.88709 6.02490 6.03465 6.18674 6.23172 6.28839 6.35370 6.47061 6.56745 6.64780 6.72342 6.88490 6.95607 7.54251 7.65672 8.17282 8.36500 9.48257 10.04173 10.39534 11.40282 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.003956 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.097450 B = 7075.777899 C = 8872.163069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.558 3.442 7 O -0.534 6.534 8 C -0.141 4.141 9 C -0.048 4.048 10 C -0.052 4.052 11 Cl -0.054 7.054 12 C -0.066 4.066 13 C -0.147 4.147 14 C 0.148 3.852 15 F -0.120 7.120 16 C 0.110 3.890 17 C -0.149 4.149 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.949 8.358 6.431 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.003 4.003 5 N -0.321 5.321 6 C 0.345 3.655 7 O -0.412 6.412 8 C -0.145 4.145 9 C -0.067 4.067 10 C -0.079 4.079 11 Cl -0.025 7.025 12 C -0.084 4.084 13 C -0.166 4.166 14 C 0.127 3.873 15 F -0.098 7.098 16 C -0.012 4.012 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.661 8.480 6.730 18.225 hybrid contribution -0.091 -0.749 -0.754 1.067 sum 14.571 7.731 5.976 17.544 Atomic orbital electron populations 1.21664 0.94070 1.03225 1.00520 1.21706 0.96616 0.98922 0.95590 0.91527 1.21734 0.77752 1.01855 0.98965 1.48059 1.07316 1.59034 1.17653 1.17903 0.85307 0.79306 0.83018 1.90797 1.74384 1.41431 1.34591 1.19976 0.94556 0.93289 1.06703 1.21160 0.94033 0.96279 0.95223 1.20794 0.93277 0.87522 1.06297 1.98405 1.86929 1.21773 1.95351 1.21037 1.00483 0.90270 0.96657 1.21048 0.93151 0.98396 1.04008 1.17673 0.91602 0.79305 0.98682 1.91577 1.88833 1.37531 1.91897 1.21883 0.96540 0.99171 0.83634 1.22526 1.00564 0.98657 0.97306 1.20218 0.90675 0.87408 0.94903 0.92993 1.42466 1.79003 1.07669 1.06930 1.19171 1.37424 0.93872 0.86536 0.91309 1.24688 1.02177 0.97153 0.96564 1.69632 1.51625 1.13099 1.23698 0.86325 0.77769 0.79231 0.83168 1.21360 1.21792 1.21360 0.90990 0.93708 0.92749 0.90239 0.89574 0.83008 0.83488 0.83135 0.89310 0.91219 0.90551 0.93298 0.78111 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.05 37.16 0.34 -1.83 16 2 C -0.11 -1.76 2.67 -90.50 -0.24 -2.00 16 3 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.98 5.43 -3.71 -0.02 1.96 16 5 N -0.59 -9.51 2.97 -173.94 -0.52 -10.03 16 6 C 0.56 9.23 6.90 -12.40 -0.09 9.15 16 7 O -0.53 -10.40 16.26 5.30 0.09 -10.32 16 8 C -0.14 -1.91 4.61 -104.91 -0.48 -2.40 16 9 C -0.05 -0.56 7.55 -39.15 -0.30 -0.86 16 10 C -0.05 -0.52 6.31 -39.56 -0.25 -0.77 16 11 Cl -0.05 -0.53 28.95 -51.86 -1.50 -2.03 16 12 C -0.07 -0.54 9.82 -39.48 -0.39 -0.92 16 13 C -0.15 -1.30 10.01 -39.57 -0.40 -1.69 16 14 C 0.15 1.82 7.27 -38.96 -0.28 1.54 16 15 F -0.12 -1.69 16.64 2.25 0.04 -1.66 16 16 C 0.11 1.71 5.31 -3.71 -0.02 1.69 16 17 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 18 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 19 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 20 N -0.72 -16.04 3.64 -53.38 -0.19 -16.23 16 21 C -0.24 -6.09 9.93 -15.05 -0.15 -6.24 16 22 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 25 Si 0.90 21.43 29.55 -169.99 -5.02 16.41 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H 0.07 1.31 7.54 -51.93 -0.39 0.92 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 33 H 0.09 1.45 7.00 -51.93 -0.36 1.08 16 34 H 0.15 1.81 7.75 -52.49 -0.41 1.40 16 35 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 36 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.09 1.59 7.74 -51.93 -0.40 1.18 16 38 H 0.07 0.95 5.39 -51.93 -0.28 0.67 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.38 9.16 5.93 -40.82 -0.24 8.92 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 360.07 15.07 5.43 5.43 Total: -1.00 -29.53 360.07 -9.01 -38.55 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.35 Total: 7.89 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.70 Total: -2.24 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.01 Total: -52.03 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.53 -9.01 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036104215.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.816 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds