Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35648 * 124.93426 * 2 1 4 4 C 1.35466 * 107.13092 * 179.97438 * 3 2 1 5 5 Cl 1.73601 * 127.23652 * 179.97438 * 4 3 2 6 6 C 1.41550 * 105.52321 * 359.97438 * 4 3 2 7 7 C 1.47660 * 126.45920 * 179.97438 * 6 4 3 8 8 O 1.21573 * 120.00076 * 359.97438 * 7 6 4 9 9 N 1.34779 * 120.00220 * 179.97438 * 7 6 4 10 10 C 1.46491 * 120.00263 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.93471 * 328.64670 * 10 9 7 12 12 C 1.55055 * 110.87603 * 92.30359 * 10 9 7 13 13 O 1.44569 * 103.64427 * 81.55735 * 12 10 9 14 14 C 1.42965 * 106.78849 * 39.19938 * 13 12 10 15 15 C 1.53212 * 115.36513 * 104.67059 * 14 13 12 16 16 N 1.47713 * 85.90283 * 93.47455 * 15 14 13 17 17 C 1.36943 * 134.43732 * 204.09730 * 16 15 14 18 18 H 1.07990 * 120.00401 * 180.02562 * 17 16 15 19 19 C 1.38814 * 119.99484 * 0.02973 * 17 16 15 20 20 N 1.31615 * 120.00231 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99814 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47424 * 90.00240 * 21 19 17 23 23 H 1.48504 * 109.47467 * 210.00501 * 21 19 17 24 24 H 1.48499 * 109.47189 * 330.00107 * 21 19 17 25 25 C 1.47714 * 91.13350 * 24.12377 * 16 15 14 26 26 C 1.53428 * 108.17449 * 334.25111 * 14 13 12 27 27 N 1.28467 * 124.93698 * 180.26004 * 2 1 3 28 28 H 1.09000 * 109.47072 * 89.99955 * 1 2 3 29 29 H 1.09004 * 109.46807 * 210.00450 * 1 2 3 30 30 H 1.09002 * 109.47166 * 330.00207 * 1 2 3 31 31 H 1.07992 * 126.43057 * 359.97119 * 3 2 1 32 32 H 0.97003 * 119.99741 * 359.97438 * 9 7 6 33 33 H 1.09000 * 110.58597 * 200.09723 * 12 10 9 34 34 H 1.08993 * 110.58432 * 322.86325 * 12 10 9 35 35 H 1.08997 * 113.80621 * 207.72703 * 15 14 13 36 36 H 1.09008 * 113.80538 * 339.22649 * 15 14 13 37 37 H 0.97001 * 120.00307 * 179.97438 * 20 19 17 38 38 H 1.09003 * 113.80450 * 221.63880 * 25 16 15 39 39 H 1.08995 * 113.91770 * 90.13638 * 25 16 15 40 40 H 1.09002 * 110.55368 * 120.19559 * 26 14 13 41 41 H 1.08999 * 110.55385 * 242.86787 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2417 1.1121 0.0000 4 6 3.5315 0.6979 0.0006 5 17 4.9543 1.6926 0.0002 6 6 3.4752 -0.7165 0.0015 7 6 4.6269 -1.6405 0.0019 8 8 5.7599 -1.1997 0.0009 9 7 4.4222 -2.9727 0.0033 10 6 5.5648 -3.8894 0.0031 11 1 6.4122 -3.4555 -0.5278 12 6 5.9607 -4.2792 1.4507 13 8 5.0267 -5.3297 1.7886 14 6 4.8665 -6.1325 0.6165 15 6 5.5851 -7.4853 0.6443 16 7 4.3099 -8.0328 1.1503 17 6 3.9651 -9.1314 1.8915 18 1 2.9292 -9.3146 2.1358 19 6 4.9471 -10.0095 2.3290 20 7 6.2097 -9.7859 2.0318 21 14 4.4770 -11.5077 3.3407 22 1 4.2072 -12.6525 2.4341 23 1 5.5916 -11.8551 4.2584 24 1 3.2583 -11.2067 4.1341 25 6 3.5552 -6.9213 0.5362 26 6 5.1736 -5.2594 -0.6072 27 7 2.2007 -1.0531 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.8967 2.1354 -0.0004 32 1 3.5182 -3.3244 0.0045 33 1 6.9845 -4.6522 1.4808 34 1 5.8439 -3.4287 2.1222 35 1 5.8626 -7.8564 -0.3423 36 1 6.4018 -7.5350 1.3645 37 1 6.8960 -10.3993 2.3378 38 1 2.7631 -6.5238 1.1709 39 1 3.2241 -7.1218 -0.4827 40 1 6.0049 -5.6763 -1.1758 41 1 4.2906 -5.1613 -1.2387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053814076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = 41.261787 kcal Electronic energy + Delta-G solvation = -27036.072726 eV Core-core repulsion = 22980.402345 eV Total energy + Delta-G solvation = -4055.670381 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73665 -41.57930 -40.14964 -37.76044 -37.48418 -35.46114 -34.37870 -34.12685 -32.05897 -31.47012 -29.90217 -28.32552 -27.38398 -26.65740 -24.67955 -23.70718 -22.61819 -22.18885 -21.27370 -20.54671 -19.10087 -18.69300 -17.83497 -17.55438 -17.40497 -17.02995 -16.63789 -16.11454 -15.95541 -15.61300 -15.54584 -15.21359 -14.98917 -14.63677 -14.59367 -14.30549 -13.86570 -13.49876 -13.46908 -13.17528 -13.01632 -12.81259 -12.80385 -12.64576 -12.58385 -12.55075 -12.24970 -12.01014 -11.72324 -11.63858 -11.31176 -11.09609 -10.90559 -10.60688 -10.40253 -9.99642 -9.80377 -8.90516 -7.88854 -5.21350 0.37241 0.84972 0.95994 1.43844 1.46944 1.55267 1.68956 2.09814 2.22270 2.47625 2.86202 3.28452 3.31782 3.41550 3.62139 3.67963 3.73779 3.74608 3.92551 4.05647 4.32471 4.39049 4.44317 4.46952 4.62856 4.69189 4.74619 4.74831 4.77275 4.86309 4.90998 4.94962 4.98644 5.18361 5.28682 5.42617 5.53358 5.65933 5.94956 6.21326 6.37625 6.71167 6.93041 7.10232 7.61949 8.57206 9.28239 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.002439 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.873400 B =11475.276625 C =12340.748035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.269 5.269 3 C 0.021 3.979 4 C -0.132 4.132 5 Cl -0.021 7.021 6 C -0.032 4.032 7 C 0.599 3.401 8 O -0.550 6.550 9 N -0.694 5.694 10 C 0.124 3.876 11 H 0.118 0.882 12 C 0.034 3.966 13 O -0.367 6.367 14 C 0.076 3.924 15 C 0.148 3.852 16 N -0.639 5.639 17 C -0.233 4.233 18 H 0.082 0.918 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.980 3.020 22 H -0.283 1.283 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.125 3.875 26 C -0.132 4.132 27 N -0.256 5.256 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.236 0.764 32 H 0.413 0.587 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.247 0.753 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 26.983 -8.651 31.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.058 5.058 3 C -0.123 4.123 4 C -0.170 4.170 5 Cl 0.008 6.992 6 C -0.191 4.191 7 C 0.384 3.616 8 O -0.426 6.426 9 N -0.345 5.345 10 C 0.019 3.981 11 H 0.135 0.865 12 C -0.044 4.044 13 O -0.286 6.286 14 C 0.035 3.965 15 C 0.022 3.978 16 N -0.366 5.366 17 C -0.361 4.361 18 H 0.100 0.900 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.808 3.192 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.001 3.999 26 C -0.171 4.171 27 N -0.094 5.094 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.252 0.748 32 H 0.250 0.750 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.651 26.120 -8.268 30.178 hybrid contribution 0.600 -0.642 0.618 1.074 sum -12.051 25.478 -7.650 29.204 Atomic orbital electron populations 1.22785 0.69060 1.07772 1.06695 1.45946 1.09584 1.01980 1.48295 1.23254 0.87914 0.95815 1.05316 1.21085 0.90451 0.90604 1.14843 1.98357 1.36618 1.66989 1.97280 1.21724 0.91468 0.92966 1.12952 1.17053 0.86725 0.81834 0.75995 1.90810 1.23206 1.77455 1.51116 1.45717 1.10620 1.04582 1.73551 1.22432 0.90052 0.89687 0.95979 0.86456 1.24102 0.93781 0.90111 0.96407 1.88829 1.63612 1.41856 1.34299 1.23425 0.97412 0.90577 0.85088 1.22638 0.90666 0.88546 0.95958 1.46186 1.04799 1.26392 1.59222 1.19403 0.93264 0.99322 1.24109 0.89984 1.25645 0.95388 1.02348 1.02983 1.70014 0.99866 1.38975 1.51512 0.85056 0.76957 0.79158 0.78029 1.20958 1.22170 1.19443 1.22914 0.94062 0.85590 0.97352 1.23067 1.04998 0.91976 0.97025 1.73603 1.01683 1.15363 1.18760 0.87397 0.87977 0.84804 0.74793 0.75012 0.90983 0.89221 0.94521 0.94589 0.94380 0.93056 0.90665 0.87418 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.11 11.32 127.77 1.45 1.56 16 2 N -0.27 -3.29 3.72 -368.87 -1.37 -4.66 16 3 C 0.02 0.25 11.49 83.46 0.96 1.21 16 4 C -0.13 -2.73 6.80 22.45 0.15 -2.58 16 5 Cl -0.02 -0.46 28.17 -2.72 -0.08 -0.54 16 6 C -0.03 -0.78 7.13 42.45 0.30 -0.47 16 7 C 0.60 16.94 7.82 86.73 0.68 17.62 16 8 O -0.55 -18.28 15.52 -3.95 -0.06 -18.34 16 9 N -0.69 -17.83 5.15 -439.03 -2.26 -20.09 16 10 C 0.12 3.31 3.51 46.38 0.16 3.48 16 11 H 0.12 3.01 7.55 -2.38 -0.02 2.99 16 12 C 0.03 1.09 7.42 72.69 0.54 1.63 16 13 O -0.37 -15.05 11.29 -148.98 -1.68 -16.73 16 14 C 0.08 2.89 1.53 -10.46 -0.02 2.87 16 15 C 0.15 7.23 6.90 86.21 0.60 7.83 16 16 N -0.64 -34.29 3.70 -733.84 -2.72 -37.00 16 17 C -0.23 -13.68 10.70 84.03 0.90 -12.78 16 18 H 0.08 4.60 7.83 -2.92 -0.02 4.58 16 19 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 20 N -0.95 -59.97 11.39 21.65 0.25 -59.72 16 21 Si 0.98 47.52 29.55 68.60 2.03 49.55 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 C 0.13 5.10 8.34 86.22 0.72 5.82 16 26 C -0.13 -3.53 6.12 31.42 0.19 -3.34 16 27 N -0.26 -5.17 11.66 -48.17 -0.56 -5.73 16 28 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.10 0.23 8.14 -2.38 -0.02 0.21 16 30 H 0.13 -0.68 8.13 -2.39 -0.02 -0.70 16 31 H 0.24 0.45 8.06 -2.91 -0.02 0.43 16 32 H 0.41 9.86 8.35 -92.71 -0.77 9.08 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.04 1.76 8.07 -2.39 -0.02 1.74 16 36 H 0.04 2.05 7.18 -2.38 -0.02 2.03 16 37 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.64 8.09 -2.39 -0.02 2.62 16 40 H 0.11 2.64 7.89 -2.39 -0.02 2.62 16 41 H 0.11 2.41 7.82 -2.39 -0.02 2.39 16 Total: -1.00 -83.85 364.05 0.94 -82.90 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.30 Total: 11.29 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 7.10 Total: 19.08 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -6.66 Total: -127.20 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.74 Total: -35.08 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -83.85 0.94 -82.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053814076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.163 kcal (2) G-P(sol) polarization free energy of solvation -83.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds