Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34606 * 126.48799 * 2 1 4 4 Cl 1.73601 * 125.44063 * 359.97438 * 3 2 1 5 5 N 1.31024 * 109.12486 * 180.27403 * 3 2 1 6 6 C 1.33302 * 109.70771 * 359.72860 * 5 3 2 7 7 C 1.36674 * 107.82724 * 359.97438 * 6 5 3 8 8 C 1.46667 * 126.84266 * 180.02562 * 7 6 5 9 9 O 1.21693 * 119.99887 * 184.95217 * 8 7 6 10 10 N 1.34772 * 119.99671 * 4.94230 * 8 7 6 11 11 C 1.46509 * 119.99843 * 174.66257 * 10 8 7 12 12 H 1.09003 * 110.55843 * 327.67729 * 11 10 8 13 13 C 1.54540 * 110.50825 * 90.34810 * 11 10 8 14 14 O 1.44631 * 105.03438 * 142.28189 * 13 11 10 15 15 C 1.43249 * 105.22313 * 320.97161 * 14 13 11 16 16 C 1.52882 * 115.85634 * 168.82531 * 15 14 13 17 17 N 1.47779 * 85.78276 * 94.50811 * 16 15 14 18 18 C 1.36942 * 134.40204 * 203.83957 * 17 16 15 19 19 H 1.08002 * 119.99919 * 180.02562 * 18 17 16 20 20 C 1.38803 * 119.99771 * 0.04390 * 18 17 16 21 21 N 1.31618 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00197 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46793 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47404 * 119.99844 * 22 20 18 25 25 H 1.48496 * 109.47226 * 240.00362 * 22 20 18 26 26 C 1.47786 * 91.20140 * 23.87044 * 17 16 15 27 27 C 1.53475 * 106.25852 * 38.93451 * 15 14 13 28 28 H 1.09006 * 109.47073 * 273.55046 * 1 2 3 29 29 H 1.09010 * 109.46995 * 33.54463 * 1 2 3 30 30 H 1.08994 * 109.47513 * 153.54664 * 1 2 3 31 31 H 1.07993 * 126.09062 * 180.02562 * 6 5 3 32 32 H 0.96998 * 120.00440 * 354.66448 * 10 8 7 33 33 H 1.09000 * 110.33171 * 261.17362 * 13 11 10 34 34 H 1.09004 * 110.33026 * 23.39374 * 13 11 10 35 35 H 1.09002 * 113.81954 * 208.72141 * 16 15 14 36 36 H 1.08991 * 113.82147 * 340.28886 * 16 15 14 37 37 H 0.97002 * 120.00531 * 179.97438 * 21 20 18 38 38 H 1.08999 * 113.82727 * 221.91530 * 26 17 16 39 39 H 1.09000 * 113.93415 * 90.35387 * 26 17 16 40 40 H 1.08995 * 110.57368 * 218.73002 * 27 15 14 41 41 H 1.09003 * 110.57526 * 95.84286 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2654 1.0822 0.0000 4 17 1.7269 2.7326 -0.0006 5 7 3.5160 0.6912 -0.0059 6 6 3.5705 -0.6407 -0.0040 7 6 2.2876 -1.1120 0.0041 8 6 1.8669 -2.5170 0.0095 9 8 0.6861 -2.7989 -0.0744 10 7 2.7882 -3.4959 0.1070 11 6 2.3629 -4.8925 0.2301 12 1 1.4215 -4.9592 0.7755 13 6 2.2273 -5.5422 -1.1655 14 8 2.7059 -6.8966 -0.9968 15 6 3.8296 -6.7914 -0.1146 16 6 4.3655 -8.1103 0.4426 17 7 5.3199 -8.0730 -0.6851 18 6 6.0384 -9.0207 -1.3640 19 1 6.6868 -8.7274 -2.1764 20 6 5.9330 -10.3582 -1.0083 21 7 5.1422 -10.7157 -0.0188 22 14 6.9137 -11.6510 -1.9338 23 1 7.7202 -10.9951 -2.9943 24 1 7.8168 -12.3570 -0.9899 25 1 5.9833 -12.6284 -2.5535 26 6 5.1897 -6.6044 -0.7873 27 6 3.4567 -5.7324 0.9317 28 1 -0.3633 0.0636 1.0258 29 1 -0.3633 0.8566 -0.5679 30 1 -0.3634 -0.9200 -0.4578 31 1 4.4685 -1.2406 -0.0073 32 1 3.7328 -3.2758 0.0957 33 1 1.1843 -5.5458 -1.4819 34 1 2.8424 -5.0110 -1.8919 35 1 4.8364 -8.0158 1.4211 36 1 3.6526 -8.9330 0.3890 37 1 5.0682 -11.6505 0.2296 38 1 5.1275 -6.2381 -1.8120 39 1 5.9087 -6.0536 -0.1809 40 1 4.3198 -5.1122 1.1734 41 1 3.0595 -6.2048 1.8302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053870161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = 51.028873 kcal Electronic energy + Delta-G solvation = -26907.133712 eV Core-core repulsion = 22851.886864 eV Total energy + Delta-G solvation = -4055.246848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.75272 -40.37877 -39.13681 -37.52000 -36.24136 -35.02466 -34.32352 -32.09421 -31.34878 -29.60811 -28.07461 -27.65070 -25.86453 -24.97465 -24.00496 -22.35554 -21.95209 -20.95604 -20.63399 -19.10388 -18.52559 -17.01039 -16.76358 -16.70931 -16.58143 -15.44035 -15.35771 -15.06858 -15.03581 -14.78239 -14.46656 -14.14816 -13.96406 -13.67552 -13.29358 -13.20131 -13.11076 -12.84251 -12.35115 -12.12229 -12.07214 -11.73891 -11.70909 -11.26877 -11.10812 -10.91635 -10.84011 -10.51927 -10.36722 -10.30559 -10.18752 -9.75474 -9.60886 -9.36642 -9.06504 -8.96667 -8.80967 -6.88994 -5.75540 -3.07530 0.68282 0.70514 2.11727 2.17029 2.86578 2.89471 3.40671 3.45647 3.48439 4.04345 4.21957 4.27511 4.42332 4.45682 4.59966 4.69318 4.78642 4.90108 4.97112 5.05707 5.17214 5.27553 5.40045 5.43550 5.58181 5.71990 5.83146 5.84014 5.89162 6.05926 6.13951 6.18696 6.26553 6.49762 6.57763 6.87735 7.05951 7.18049 7.18972 7.46282 7.66056 7.78259 7.98890 9.05055 9.71706 10.57402 11.42039 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.032317 B = 0.002063 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.201547 B =13570.297544 C =14041.132739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.412 5.412 3 C 0.260 3.740 4 Cl 0.043 6.957 5 N -0.467 5.467 6 C 0.051 3.949 7 C -0.068 4.068 8 C 0.597 3.403 9 O -0.540 6.540 10 N -0.701 5.701 11 C 0.116 3.884 12 H 0.105 0.895 13 C 0.035 3.965 14 O -0.328 6.328 15 C 0.056 3.944 16 C 0.176 3.824 17 N -0.605 5.605 18 C -0.220 4.220 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.104 3.896 27 C -0.146 4.146 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.192 0.808 32 H 0.406 0.594 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.084 0.916 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 25.269 2.988 27.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.095 5.095 3 C -0.027 4.027 4 Cl 0.071 6.929 5 N -0.188 5.188 6 C -0.103 4.103 7 C -0.185 4.185 8 C 0.383 3.617 9 O -0.418 6.418 10 N -0.353 5.353 11 C 0.012 3.988 12 H 0.123 0.877 13 C -0.044 4.044 14 O -0.246 6.246 15 C 0.014 3.986 16 C 0.050 3.950 17 N -0.331 5.331 18 C -0.348 4.348 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.023 4.023 27 C -0.185 4.185 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.209 0.791 32 H 0.242 0.758 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.640 25.182 2.752 27.104 hybrid contribution 0.352 -0.601 -0.349 0.779 sum -9.288 24.581 2.403 26.387 Atomic orbital electron populations 1.22494 0.74384 1.06659 1.04848 1.45053 1.08648 1.04382 1.51454 1.23259 0.86652 0.84595 1.08186 1.98439 1.88660 1.08785 1.97047 1.70087 1.16085 1.12652 1.19966 1.22746 0.95679 0.90092 1.01822 1.20785 0.91066 0.88551 1.18095 1.16623 0.85763 0.82773 0.76539 1.90808 1.16859 1.83749 1.50371 1.45717 1.09582 1.06097 1.73909 1.22558 0.99708 0.78714 0.97840 0.87740 1.23806 1.00495 0.84632 0.95419 1.89137 1.44831 1.23422 1.67170 1.23810 0.87369 0.98092 0.89301 1.22206 0.90511 0.91801 0.90435 1.45834 1.51593 0.99741 1.35898 1.19024 1.19051 0.86006 1.10715 0.90179 1.24776 1.00133 0.96885 0.98657 1.69808 1.40781 1.16015 1.30208 0.86037 0.79133 0.81719 0.78806 1.20477 1.21762 1.21676 1.22954 0.92648 0.88319 0.98354 1.23067 0.97964 0.97536 0.99975 0.89481 0.89145 0.86544 0.79147 0.75848 0.88954 0.92220 0.93995 0.89949 0.93649 0.93474 0.94050 0.89723 0.89125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.61 59.85 0.63 1.02 16 2 N -0.41 -3.82 3.18 -118.35 -0.38 -4.20 16 3 C 0.26 2.52 8.48 -90.33 -0.77 1.75 16 4 Cl 0.04 0.32 28.81 -51.86 -1.49 -1.18 16 5 N -0.47 -5.07 11.21 -11.49 -0.13 -5.20 16 6 C 0.05 0.47 11.37 -17.48 -0.20 0.27 16 7 C -0.07 -0.67 6.91 -82.10 -0.57 -1.24 16 8 C 0.60 6.45 7.77 -12.86 -0.10 6.35 16 9 O -0.54 -7.19 14.50 5.19 0.08 -7.11 16 10 N -0.70 -6.66 5.07 -53.44 -0.27 -6.94 16 11 C 0.12 1.38 3.45 -66.20 -0.23 1.15 16 12 H 0.10 1.29 7.64 -51.93 -0.40 0.89 16 13 C 0.04 0.50 7.37 37.97 0.28 0.78 16 14 O -0.33 -6.34 11.44 -35.23 -0.40 -6.74 16 15 C 0.06 1.01 1.28 -90.65 -0.12 0.89 16 16 C 0.18 4.06 7.02 -3.40 -0.02 4.03 16 17 N -0.60 -15.49 3.71 -183.63 -0.68 -16.17 16 18 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.44 11.40 55.49 0.63 -26.80 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.10 2.03 8.44 -3.40 -0.03 2.00 16 27 C -0.15 -1.87 6.25 -25.57 -0.16 -2.03 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.41 7.90 -51.92 -0.41 0.00 16 30 H 0.12 0.93 6.24 -51.93 -0.32 0.61 16 31 H 0.19 1.10 7.46 -52.49 -0.39 0.71 16 32 H 0.41 2.88 7.32 -40.82 -0.30 2.58 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.08 2.18 7.19 -51.93 -0.37 1.81 16 37 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.73 7.95 -51.93 -0.41 0.31 16 40 H 0.08 0.89 7.39 -51.93 -0.38 0.51 16 41 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -35.04 359.32 -8.85 -43.89 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.07 Total: -0.51 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.53 Total: 8.25 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.82 Total: -59.31 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.33 Total: -13.85 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.49 Total: -1.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.04 -8.85 -43.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053870161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.922 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds