Wall clock time and date at job start Sat Apr 11 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34606 * 126.48799 * 2 1 4 4 Cl 1.73601 * 125.44063 * 359.97438 * 3 2 1 5 5 N 1.31024 * 109.12486 * 180.27403 * 3 2 1 6 6 C 1.33302 * 109.70771 * 359.72860 * 5 3 2 7 7 C 1.36674 * 107.82724 * 359.97438 * 6 5 3 8 8 C 1.46667 * 126.84266 * 180.02562 * 7 6 5 9 9 O 1.21693 * 119.99887 * 184.95217 * 8 7 6 10 10 N 1.34772 * 119.99671 * 4.94230 * 8 7 6 11 11 C 1.46509 * 119.99843 * 174.66257 * 10 8 7 12 12 H 1.09003 * 110.55843 * 327.67729 * 11 10 8 13 13 C 1.54540 * 110.50825 * 90.34810 * 11 10 8 14 14 O 1.44631 * 105.03438 * 142.28189 * 13 11 10 15 15 C 1.43249 * 105.22313 * 320.97161 * 14 13 11 16 16 C 1.52882 * 115.85634 * 168.82531 * 15 14 13 17 17 N 1.47779 * 85.78276 * 94.50811 * 16 15 14 18 18 C 1.36942 * 134.40204 * 203.83957 * 17 16 15 19 19 H 1.08002 * 119.99919 * 180.02562 * 18 17 16 20 20 C 1.38803 * 119.99771 * 0.04390 * 18 17 16 21 21 N 1.31618 * 120.00269 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00197 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46793 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47404 * 119.99844 * 22 20 18 25 25 H 1.48496 * 109.47226 * 240.00362 * 22 20 18 26 26 C 1.47786 * 91.20140 * 23.87044 * 17 16 15 27 27 C 1.53475 * 106.25852 * 38.93451 * 15 14 13 28 28 H 1.09006 * 109.47073 * 273.55046 * 1 2 3 29 29 H 1.09010 * 109.46995 * 33.54463 * 1 2 3 30 30 H 1.08994 * 109.47513 * 153.54664 * 1 2 3 31 31 H 1.07993 * 126.09062 * 180.02562 * 6 5 3 32 32 H 0.96998 * 120.00440 * 354.66448 * 10 8 7 33 33 H 1.09000 * 110.33171 * 261.17362 * 13 11 10 34 34 H 1.09004 * 110.33026 * 23.39374 * 13 11 10 35 35 H 1.09002 * 113.81954 * 208.72141 * 16 15 14 36 36 H 1.08991 * 113.82147 * 340.28886 * 16 15 14 37 37 H 0.97002 * 120.00531 * 179.97438 * 21 20 18 38 38 H 1.08999 * 113.82727 * 221.91530 * 26 17 16 39 39 H 1.09000 * 113.93415 * 90.35387 * 26 17 16 40 40 H 1.08995 * 110.57368 * 218.73002 * 27 15 14 41 41 H 1.09003 * 110.57526 * 95.84286 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2654 1.0822 0.0000 4 17 1.7269 2.7326 -0.0006 5 7 3.5160 0.6912 -0.0059 6 6 3.5705 -0.6407 -0.0040 7 6 2.2876 -1.1120 0.0041 8 6 1.8669 -2.5170 0.0095 9 8 0.6861 -2.7989 -0.0744 10 7 2.7882 -3.4959 0.1070 11 6 2.3629 -4.8925 0.2301 12 1 1.4215 -4.9592 0.7755 13 6 2.2273 -5.5422 -1.1655 14 8 2.7059 -6.8966 -0.9968 15 6 3.8296 -6.7914 -0.1146 16 6 4.3655 -8.1103 0.4426 17 7 5.3199 -8.0730 -0.6851 18 6 6.0384 -9.0207 -1.3640 19 1 6.6868 -8.7274 -2.1764 20 6 5.9330 -10.3582 -1.0083 21 7 5.1422 -10.7157 -0.0188 22 14 6.9137 -11.6510 -1.9338 23 1 7.7202 -10.9951 -2.9943 24 1 7.8168 -12.3570 -0.9899 25 1 5.9833 -12.6284 -2.5535 26 6 5.1897 -6.6044 -0.7873 27 6 3.4567 -5.7324 0.9317 28 1 -0.3633 0.0636 1.0258 29 1 -0.3633 0.8566 -0.5679 30 1 -0.3634 -0.9200 -0.4578 31 1 4.4685 -1.2406 -0.0073 32 1 3.7328 -3.2758 0.0957 33 1 1.1843 -5.5458 -1.4819 34 1 2.8424 -5.0110 -1.8919 35 1 4.8364 -8.0158 1.4211 36 1 3.6526 -8.9330 0.3890 37 1 5.0682 -11.6505 0.2296 38 1 5.1275 -6.2381 -1.8120 39 1 5.9087 -6.0536 -0.1809 40 1 4.3198 -5.1122 1.1734 41 1 3.0595 -6.2048 1.8302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053870161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:34 Heat of formation + Delta-G solvation = 25.667365 kcal Electronic energy + Delta-G solvation = -26908.233470 eV Core-core repulsion = 22851.886864 eV Total energy + Delta-G solvation = -4056.346606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.43631 -41.60393 -40.20416 -38.13646 -37.72525 -35.96126 -35.12292 -34.10541 -32.33430 -30.68852 -29.53281 -28.23036 -27.46002 -26.64785 -24.85204 -23.85656 -22.88107 -21.96401 -21.43691 -20.60692 -19.25076 -18.71417 -17.78409 -17.48804 -17.40292 -17.08121 -16.59775 -16.18011 -16.14518 -15.89206 -15.59860 -15.44660 -14.86776 -14.78245 -14.56718 -14.24162 -14.19967 -13.82063 -13.57212 -13.21756 -12.99303 -12.97226 -12.86771 -12.79763 -12.70532 -12.62606 -12.14966 -11.79165 -11.62825 -11.56262 -11.34921 -11.12224 -11.00412 -10.93295 -10.52556 -10.23844 -9.70245 -8.89929 -7.88892 -5.20955 -0.01594 0.04522 1.43184 1.45357 1.46814 1.47148 1.56869 2.10589 2.12930 2.48309 2.95065 3.30462 3.37420 3.42287 3.50065 3.66345 3.72346 3.74654 3.83633 4.12832 4.19347 4.22359 4.26098 4.54980 4.61073 4.70630 4.75939 4.79120 4.89426 4.91160 4.97286 5.05247 5.15691 5.22806 5.26103 5.40401 5.50495 5.54178 5.94977 6.17988 6.32276 6.49996 6.93581 7.00215 7.62674 8.56599 9.28582 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.032317 B = 0.002063 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.201547 B =13570.297544 C =14041.132739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.415 5.415 3 C 0.254 3.746 4 Cl 0.059 6.941 5 N -0.495 5.495 6 C 0.059 3.941 7 C -0.084 4.084 8 C 0.602 3.398 9 O -0.568 6.568 10 N -0.688 5.688 11 C 0.134 3.866 12 H 0.104 0.896 13 C 0.032 3.968 14 O -0.369 6.369 15 C 0.074 3.926 16 C 0.168 3.832 17 N -0.642 5.642 18 C -0.230 4.230 19 H 0.083 0.917 20 C -0.072 4.072 21 N -0.954 5.954 22 Si 0.978 3.022 23 H -0.265 1.265 24 H -0.290 1.290 25 H -0.295 1.295 26 C 0.107 3.893 27 C -0.132 4.132 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.221 0.779 32 H 0.420 0.580 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.248 0.752 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.118 0.882 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 27.656 3.060 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.098 5.098 3 C -0.032 4.032 4 Cl 0.086 6.914 5 N -0.216 5.216 6 C -0.096 4.096 7 C -0.201 4.201 8 C 0.389 3.611 9 O -0.448 6.448 10 N -0.341 5.341 11 C 0.028 3.972 12 H 0.122 0.878 13 C -0.045 4.045 14 O -0.287 6.287 15 C 0.033 3.967 16 C 0.042 3.958 17 N -0.368 5.368 18 C -0.358 4.358 19 H 0.100 0.900 20 C -0.264 4.264 21 N -0.604 5.604 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.217 1.217 25 H -0.222 1.222 26 C -0.018 4.018 27 C -0.171 4.171 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.238 0.762 32 H 0.259 0.741 33 H 0.112 0.888 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.980 27.630 2.817 29.189 hybrid contribution 0.094 -1.229 -0.413 1.300 sum -8.886 26.402 2.404 27.960 Atomic orbital electron populations 1.22630 0.73254 1.06866 1.05852 1.45227 1.09436 1.04202 1.50930 1.23485 0.86699 0.85392 1.07650 1.98444 1.88474 1.07502 1.96931 1.70106 1.16809 1.13600 1.21129 1.23285 0.96404 0.89751 1.00120 1.20714 0.91592 0.88188 1.19592 1.16702 0.85352 0.83231 0.75825 1.90806 1.18117 1.84180 1.51719 1.45494 1.10299 1.04827 1.73434 1.22210 0.99436 0.79554 0.95971 0.87842 1.23983 1.00616 0.82733 0.97207 1.89097 1.45249 1.26658 1.67730 1.23397 0.86859 0.96434 0.89975 1.22149 0.89855 0.93268 0.90486 1.46259 1.51760 1.02300 1.36531 1.19416 1.18526 0.87126 1.10744 0.89956 1.25629 1.01743 0.99024 1.00023 1.70004 1.42598 1.15799 1.31970 0.85013 0.77643 0.78894 0.77809 1.18898 1.21679 1.22246 1.23196 0.94057 0.85217 0.99318 1.22967 0.99503 0.96292 0.98309 0.88332 0.87140 0.87866 0.76217 0.74069 0.88772 0.91341 0.93512 0.94541 0.94343 0.93222 0.90540 0.86386 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.61 127.77 1.36 2.00 16 2 N -0.41 -6.94 3.18 -528.35 -1.68 -8.62 16 3 C 0.25 4.46 8.48 180.25 1.53 5.99 16 4 Cl 0.06 0.77 28.81 -2.72 -0.08 0.69 16 5 N -0.49 -9.69 11.21 -190.25 -2.13 -11.83 16 6 C 0.06 0.91 11.37 84.10 0.96 1.87 16 7 C -0.08 -1.47 6.91 39.95 0.28 -1.19 16 8 C 0.60 11.61 7.77 86.44 0.67 12.28 16 9 O -0.57 -14.28 14.50 -4.33 -0.06 -14.34 16 10 N -0.69 -10.83 5.07 -441.21 -2.24 -13.07 16 11 C 0.13 2.81 3.45 46.11 0.16 2.97 16 12 H 0.10 2.31 7.64 -2.39 -0.02 2.29 16 13 C 0.03 0.87 7.37 72.51 0.53 1.41 16 14 O -0.37 -14.16 11.44 -148.98 -1.70 -15.86 16 15 C 0.07 2.60 1.28 -10.65 -0.01 2.59 16 16 C 0.17 7.87 7.02 86.09 0.60 8.47 16 17 N -0.64 -32.99 3.71 -741.15 -2.75 -35.74 16 18 C -0.23 -13.11 10.70 84.03 0.90 -12.21 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 20 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 21 N -0.95 -58.80 11.40 21.65 0.25 -58.55 16 22 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 C 0.11 3.97 8.44 86.09 0.73 4.70 16 27 C -0.13 -2.97 6.25 31.35 0.20 -2.78 16 28 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.11 0.80 7.90 -2.38 -0.02 0.79 16 30 H 0.10 1.56 6.24 -2.39 -0.01 1.54 16 31 H 0.22 1.68 7.46 -2.91 -0.02 1.66 16 32 H 0.42 4.16 7.32 -92.71 -0.68 3.48 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 1.72 8.06 -2.38 -0.02 1.70 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 2.02 7.19 -2.39 -0.02 2.01 16 37 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.36 7.95 -2.39 -0.02 2.34 16 40 H 0.12 1.91 7.39 -2.39 -0.02 1.89 16 41 H 0.10 2.16 8.12 -2.39 -0.02 2.14 16 Total: -1.00 -78.59 359.32 0.40 -78.19 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.40 Total: 8.04 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 8.36 Total: 22.40 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -8.55 Total: -127.81 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.77 Total: -30.21 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 17 Polarization: 0.77 SS G_CDS: -0.08 Total: 0.69 kcal Total: -78.59 0.40 -78.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053870161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.862 kcal (2) G-P(sol) polarization free energy of solvation -78.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds