Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.77719 * 2 1 4 4 C 1.54325 * 110.71831 * 236.76908 * 2 1 3 5 5 N 1.47018 * 107.27245 * 219.43926 * 4 2 1 6 6 C 1.36943 * 125.65059 * 178.98574 * 5 4 2 7 7 H 1.07995 * 119.99612 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99889 * 180.02562 * 6 5 4 9 9 N 1.31623 * 120.00182 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47195 * 60.00289 * 10 8 6 12 12 H 1.48499 * 109.47237 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47399 * 299.99868 * 10 8 6 14 14 C 1.47428 * 108.70111 * 358.94099 * 5 4 2 15 15 C 1.54904 * 104.83136 * 24.12627 * 14 5 4 16 16 H 1.09005 * 111.04030 * 81.08061 * 15 14 5 17 17 N 1.46501 * 111.00246 * 204.91353 * 15 14 5 18 18 C 1.34777 * 120.00204 * 267.19458 * 17 15 14 19 19 O 1.21286 * 119.99956 * 0.02562 * 18 17 15 20 20 C 1.50696 * 119.99983 * 179.97438 * 18 17 15 21 21 C 1.50706 * 109.47144 * 180.02562 * 20 18 17 22 22 C 1.38235 * 120.00412 * 100.00266 * 21 20 18 23 23 C 1.38226 * 120.04714 * 179.97438 * 22 21 20 24 24 C 1.38255 * 120.05959 * 0.02750 * 23 22 21 25 25 C 1.38284 * 120.01644 * 359.97438 * 24 23 22 26 26 Cl 1.73599 * 120.02475 * 179.97438 * 25 24 23 27 27 C 1.38406 * 120.00438 * 280.27298 * 21 20 18 28 28 F 1.35101 * 120.03284 * 0.02879 * 27 21 20 29 29 H 1.09005 * 109.46795 * 296.75692 * 1 2 3 30 30 H 1.09000 * 109.47618 * 56.75567 * 1 2 3 31 31 H 1.08999 * 109.47409 * 176.75764 * 1 2 3 32 32 H 1.08998 * 109.88113 * 338.85876 * 4 2 1 33 33 H 1.09009 * 109.88290 * 100.02155 * 4 2 1 34 34 H 0.96994 * 119.99808 * 179.97438 * 9 8 6 35 35 H 1.09002 * 110.36739 * 265.28453 * 14 5 4 36 36 H 1.09000 * 110.36229 * 142.96637 * 14 5 4 37 37 H 0.97001 * 119.99676 * 87.20462 * 17 15 14 38 38 H 1.09002 * 109.46889 * 60.00500 * 20 18 17 39 39 H 1.08997 * 109.47407 * 300.00612 * 20 18 17 40 40 H 1.08000 * 119.98039 * 0.02562 * 22 21 20 41 41 H 1.07999 * 119.96727 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.99076 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0759 -0.7910 -1.2074 5 7 3.2445 -1.5506 -0.7393 6 6 4.0044 -2.3966 -1.5023 7 1 3.7612 -2.5502 -2.5433 8 6 5.0866 -3.0573 -0.9375 9 7 5.3820 -2.8712 0.3316 10 14 6.1227 -4.2119 -1.9781 11 1 6.7147 -3.4587 -3.1128 12 1 7.2089 -4.7883 -1.1456 13 1 5.2679 -5.3069 -2.5029 14 6 3.4633 -1.2498 0.6872 15 6 2.0791 -0.7955 1.2136 16 1 1.4448 -1.6533 1.4377 17 7 2.2216 0.0694 2.3874 18 6 2.1875 -0.4632 3.6250 19 8 2.0392 -1.6585 3.7670 20 6 2.3347 0.4265 4.8324 21 6 2.2627 -0.4096 6.0842 22 6 3.4237 -0.7715 6.7415 23 6 3.3587 -1.5378 7.8900 24 6 2.1325 -1.9442 8.3829 25 6 0.9695 -1.5837 7.7274 26 17 -0.5701 -2.0944 8.3457 27 6 1.0345 -0.8200 6.5728 28 9 -0.1004 -0.4719 5.9276 29 1 -0.3633 0.4627 0.9177 30 1 -0.3634 0.5634 -0.8594 31 1 -0.3634 -1.0260 -0.0581 32 1 1.3129 -1.4756 -1.5777 33 1 2.3739 -0.1021 -1.9979 34 1 6.1380 -3.3332 0.7263 35 1 4.1932 -0.4479 0.7982 36 1 3.7961 -2.1427 1.2164 37 1 2.3404 1.0254 2.2738 38 1 1.5317 1.1635 4.8407 39 1 3.2966 0.9376 4.7921 40 1 4.3822 -0.4545 6.3580 41 1 4.2665 -1.8202 8.4023 42 1 2.0830 -2.5426 9.2806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080508839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -60.700574 kcal Electronic energy + Delta-G solvation = -27171.421851 eV Core-core repulsion = 23091.410089 eV Total energy + Delta-G solvation = -4080.011762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.03226 -41.12765 -40.04070 -39.02448 -37.60105 -35.61911 -34.36369 -33.82064 -32.16289 -31.41483 -30.01161 -28.41879 -27.30840 -25.32067 -23.86435 -23.41711 -22.14555 -21.59244 -20.90253 -18.93144 -18.76517 -18.13331 -17.83639 -17.53138 -16.97756 -16.84634 -16.67069 -15.94782 -15.60888 -15.46999 -15.32974 -14.57022 -14.45024 -14.40665 -14.34274 -14.20417 -13.98907 -13.92535 -13.39486 -13.36585 -13.05329 -12.82890 -12.67157 -12.58768 -12.46924 -12.41552 -12.25072 -12.03546 -11.95842 -11.83540 -11.65409 -11.41889 -10.94809 -10.75849 -9.96154 -9.85132 -9.69967 -8.89990 -7.77197 -5.23786 -0.02955 0.02438 0.94978 1.44596 1.48761 1.54943 1.70040 2.14179 2.47618 2.56494 3.07985 3.31778 3.40285 3.67236 3.71650 3.81701 3.97184 4.03052 4.07424 4.10338 4.19364 4.31250 4.50917 4.54198 4.61926 4.65288 4.68436 4.87811 4.90632 4.95509 5.01838 5.07679 5.17065 5.21506 5.30640 5.31277 5.44000 5.49715 5.66887 5.71191 5.81406 6.28576 6.65043 7.07645 7.36565 7.76557 8.39101 9.22948 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.002924 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.622303 B = 9573.511626 C =10697.478122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.101 0.899 4 C 0.132 3.868 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.084 0.916 8 C -0.069 4.069 9 N -0.947 5.947 10 Si 0.982 3.018 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.158 3.842 15 C 0.137 3.863 16 H 0.060 0.940 17 N -0.700 5.700 18 C 0.507 3.493 19 O -0.583 6.583 20 C -0.093 4.093 21 C -0.102 4.102 22 C -0.080 4.080 23 C -0.111 4.111 24 C -0.085 4.085 25 C -0.092 4.092 26 Cl -0.060 7.060 27 C 0.097 3.903 28 F -0.139 7.139 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.026 0.974 33 H 0.034 0.966 34 H 0.245 0.755 35 H -0.004 1.004 36 H 0.060 0.940 37 H 0.416 0.584 38 H 0.130 0.870 39 H 0.146 0.854 40 H 0.161 0.839 41 H 0.173 0.827 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 11.460 16.586 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.113 4.113 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.102 0.898 8 C -0.261 4.261 9 N -0.596 5.596 10 Si 0.809 3.191 11 H -0.199 1.199 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.032 3.968 15 C 0.030 3.970 16 H 0.078 0.922 17 N -0.352 5.352 18 C 0.295 3.705 19 O -0.463 6.463 20 C -0.132 4.132 21 C -0.103 4.103 22 C -0.098 4.098 23 C -0.129 4.129 24 C -0.104 4.104 25 C -0.119 4.119 26 Cl -0.031 7.031 27 C 0.077 3.923 28 F -0.118 7.118 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.014 0.986 36 H 0.078 0.922 37 H 0.254 0.746 38 H 0.148 0.852 39 H 0.164 0.836 40 H 0.179 0.821 41 H 0.191 0.809 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.432 10.466 16.703 21.066 hybrid contribution 0.268 -0.604 -0.808 1.043 sum -7.164 9.862 15.896 20.032 Atomic orbital electron populations 1.21687 0.92344 1.01701 1.02976 1.22372 0.97174 0.99197 0.92515 0.88066 1.21603 0.88622 0.93289 0.95765 1.44698 1.31974 1.50932 1.07801 1.19447 1.06628 1.17594 0.93522 0.89845 1.25698 1.00344 1.02436 0.97622 1.70100 1.30150 1.46983 1.12386 0.85106 0.77863 0.78638 0.77449 1.19948 1.21997 1.20474 1.21880 0.91955 0.98334 0.84666 1.22111 0.97184 0.92907 0.84783 0.92159 1.45641 1.73460 1.11571 1.04514 1.21149 0.75272 0.88794 0.85291 1.90740 1.50490 1.18193 1.86845 1.20685 1.08592 0.97024 0.86920 1.19576 0.91656 1.01503 0.97594 1.21474 0.97914 0.95858 0.94591 1.21578 0.98458 0.96807 0.96030 1.21337 0.89675 0.98840 1.00523 1.21188 0.89466 1.04009 0.97238 1.98368 1.28486 1.89741 1.86479 1.17528 0.82720 0.99843 0.92170 1.91473 1.49220 1.90213 1.80847 0.91370 0.90283 0.93994 0.95551 0.94812 0.94532 0.98601 0.92160 0.74637 0.85206 0.83600 0.82140 0.80926 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.16 71.98 0.66 -2.63 16 2 C -0.09 -2.96 3.19 -9.61 -0.03 -2.99 16 3 H 0.10 2.69 8.00 -2.39 -0.02 2.68 16 4 C 0.13 5.40 6.84 86.73 0.59 5.99 16 5 N -0.63 -33.18 3.39 -691.99 -2.35 -35.53 16 6 C -0.24 -13.99 10.27 84.03 0.86 -13.12 16 7 H 0.08 4.55 7.83 -2.91 -0.02 4.53 16 8 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 9 N -0.95 -58.54 10.09 21.65 0.22 -58.32 16 10 Si 0.98 46.75 29.55 68.60 2.03 48.78 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 C 0.16 8.07 5.58 86.85 0.48 8.55 16 15 C 0.14 5.35 2.87 46.38 0.13 5.48 16 16 H 0.06 2.76 7.44 -2.38 -0.02 2.75 16 17 N -0.70 -20.94 5.20 -435.98 -2.27 -23.21 16 18 C 0.51 16.29 7.81 87.66 0.68 16.98 16 19 O -0.58 -25.60 15.58 -3.05 -0.05 -25.65 16 20 C -0.09 -1.91 5.55 29.10 0.16 -1.75 16 21 C -0.10 -2.41 4.44 -19.82 -0.09 -2.49 16 22 C -0.08 -1.54 9.67 22.27 0.22 -1.32 16 23 C -0.11 -1.78 10.04 22.27 0.22 -1.56 16 24 C -0.09 -1.55 9.83 22.28 0.22 -1.33 16 25 C -0.09 -2.20 6.33 22.36 0.14 -2.06 16 26 Cl -0.06 -1.39 28.62 -2.72 -0.08 -1.47 16 27 C 0.10 2.63 7.09 22.39 0.16 2.79 16 28 F -0.14 -4.14 16.24 44.97 0.73 -3.40 16 29 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 31 H 0.04 1.19 8.06 -2.39 -0.02 1.17 16 32 H 0.03 1.08 7.76 -2.39 -0.02 1.06 16 33 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.06 3.72 5.87 -2.39 -0.01 3.70 16 37 H 0.42 8.73 8.57 -92.71 -0.79 7.94 16 38 H 0.13 2.02 7.96 -2.39 -0.02 2.00 16 39 H 0.15 1.95 8.00 -2.39 -0.02 1.94 16 40 H 0.16 2.31 8.04 -2.91 -0.02 2.29 16 41 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 42 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -80.53 368.69 3.38 -77.15 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.26 Total: 14.65 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.89 Total: 7.00 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -4.40 Total: -117.07 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.73 Total: -3.40 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -80.53 3.38 -77.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080508839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.454 kcal (2) G-P(sol) polarization free energy of solvation -80.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds