Wall clock time and date at job start Sat Apr 11 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 110.64055 * 2 1 4 4 C 1.54321 * 110.72129 * 236.85674 * 2 1 3 5 5 N 1.47019 * 107.27531 * 219.26706 * 4 2 1 6 6 C 1.36934 * 125.65046 * 178.97751 * 5 4 2 7 7 H 1.08004 * 119.99872 * 359.97438 * 6 5 4 8 8 C 1.38811 * 119.99970 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00204 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99812 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47343 * 90.00035 * 10 8 6 12 12 H 1.48508 * 109.47105 * 209.99613 * 10 8 6 13 13 H 1.48497 * 109.47133 * 329.99396 * 10 8 6 14 14 C 1.47431 * 108.70142 * 358.94050 * 5 4 2 15 15 C 1.55157 * 110.71845 * 123.14269 * 2 1 3 16 16 H 1.09001 * 111.00741 * 35.97146 * 15 2 1 17 17 N 1.46506 * 111.00374 * 272.11510 * 15 2 1 18 18 C 1.34774 * 119.99806 * 155.00501 * 17 15 2 19 19 O 1.21282 * 120.00225 * 359.97438 * 18 17 15 20 20 C 1.50699 * 119.99807 * 180.02562 * 18 17 15 21 21 C 1.50704 * 109.47236 * 179.97438 * 20 18 17 22 22 C 1.38460 * 120.01807 * 269.72851 * 21 20 18 23 23 F 1.35106 * 120.02044 * 359.97438 * 22 21 20 24 24 C 1.38451 * 119.96146 * 179.72035 * 22 21 20 25 25 C 1.38226 * 119.99549 * 0.52762 * 24 22 21 26 26 C 1.38201 * 120.04016 * 359.76780 * 25 24 22 27 27 C 1.38288 * 120.02040 * 89.99723 * 21 20 18 28 28 Cl 1.73604 * 119.99872 * 0.02759 * 27 21 20 29 29 H 1.08995 * 109.46744 * 179.29692 * 1 2 3 30 30 H 1.09003 * 109.46886 * 299.29850 * 1 2 3 31 31 H 1.08993 * 109.46803 * 59.29825 * 1 2 3 32 32 H 1.09001 * 109.88480 * 338.68818 * 4 2 1 33 33 H 1.09004 * 109.87910 * 99.84742 * 4 2 1 34 34 H 0.96999 * 120.00486 * 180.02562 * 9 8 6 35 35 H 1.08999 * 110.36190 * 142.96411 * 14 5 4 36 36 H 1.08999 * 110.36356 * 265.28933 * 14 5 4 37 37 H 0.96996 * 119.99506 * 335.00056 * 17 15 2 38 38 H 1.08994 * 109.47044 * 299.99727 * 20 18 17 39 39 H 1.08998 * 109.47068 * 59.99941 * 20 18 17 40 40 H 1.07995 * 119.99716 * 180.27328 * 24 22 21 41 41 H 1.08006 * 119.97513 * 179.74674 * 25 24 22 42 42 H 1.07999 * 119.97627 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2471 -1.5461 -0.7427 6 6 4.0077 -2.3900 -1.5072 7 1 3.7632 -2.5439 -2.5478 8 6 5.0923 -3.0485 -0.9443 9 7 5.3900 -2.8614 0.3240 10 14 6.1303 -4.1992 -1.9874 11 1 7.2375 -3.4345 -2.6158 12 1 6.6945 -5.2719 -1.1292 13 1 5.2844 -4.8060 -3.0463 14 6 3.4674 -1.2455 0.6837 15 6 2.0789 -0.7934 1.2151 16 1 1.4469 -1.6530 1.4383 17 7 2.2175 0.0727 2.3886 18 6 2.1827 -0.4591 3.6265 19 8 2.0363 -1.6546 3.7691 20 6 2.3247 0.4319 4.8336 21 6 2.2518 -0.4033 6.0859 22 6 1.0297 -0.6337 6.6946 23 9 -0.0980 -0.1095 6.1666 24 6 0.9634 -1.4060 7.8418 25 6 2.1181 -1.9375 8.3848 26 6 3.3386 -1.7024 7.7806 27 6 3.4060 -0.9354 6.6308 28 17 4.9397 -0.6407 5.8726 29 1 -0.3633 -1.0276 -0.0126 30 1 -0.3633 0.5029 0.8962 31 1 -0.3633 0.5247 -0.8836 32 1 1.3141 -1.4754 -1.5781 33 1 2.3712 -0.0991 -1.9991 34 1 6.1482 -3.3213 0.7173 35 1 3.8031 -2.1379 1.2120 36 1 4.1955 -0.4419 0.7939 37 1 2.3343 1.0288 2.2745 38 1 3.2850 0.9460 4.7947 39 1 1.5193 1.1663 4.8397 40 1 0.0100 -1.5898 8.3146 41 1 2.0664 -2.5365 9.2820 42 1 4.2402 -2.1177 8.2060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080839021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:59 Heat of formation + Delta-G solvation = -38.660195 kcal Electronic energy + Delta-G solvation = -27422.293602 eV Core-core repulsion = 23343.237582 eV Total energy + Delta-G solvation = -4079.056020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.08711 -39.91950 -38.93311 -37.41631 -36.51484 -33.86370 -33.10741 -32.54383 -30.59352 -30.32839 -28.59079 -26.99172 -25.57410 -23.65402 -23.03736 -22.31153 -20.52013 -20.05183 -19.43886 -17.92082 -17.01757 -16.92087 -16.83440 -16.23289 -15.68905 -15.53178 -14.94413 -14.86989 -14.57161 -14.01035 -13.71247 -13.68121 -13.55447 -13.13048 -12.92058 -12.79974 -12.58773 -12.41537 -12.22269 -11.75486 -11.65687 -11.57880 -11.45201 -11.20117 -11.05252 -10.92361 -10.76320 -10.59179 -10.32881 -9.94635 -9.75561 -9.74159 -9.54730 -8.94128 -8.85478 -8.61725 -8.39286 -6.80100 -5.59452 -3.03272 0.81655 0.86772 1.97563 3.00350 3.16194 3.43142 3.47682 3.50552 3.64162 4.05105 4.30849 4.52755 4.54429 4.63979 4.98099 5.02664 5.14312 5.22858 5.27252 5.34466 5.43202 5.47827 5.56966 5.68443 5.78833 5.80997 5.90843 5.98386 5.99924 6.07337 6.18824 6.28550 6.40807 6.51035 6.51608 6.69248 6.84495 6.99337 7.49916 7.65591 7.88001 7.97371 8.41716 8.63221 9.25278 9.86609 10.50063 11.43151 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.003568 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.433675 B = 7845.522036 C = 9403.257544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.142 3.858 5 N -0.603 5.603 6 C -0.227 4.227 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.917 5.917 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.150 3.850 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.712 5.712 18 C 0.518 3.482 19 O -0.526 6.526 20 C -0.111 4.111 21 C -0.087 4.087 22 C 0.123 3.877 23 F -0.131 7.131 24 C -0.151 4.151 25 C -0.081 4.081 26 C -0.120 4.120 27 C 0.004 3.996 28 Cl -0.044 7.044 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.023 0.977 34 H 0.252 0.748 35 H 0.111 0.889 36 H 0.012 0.988 37 H 0.394 0.606 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.151 9.266 16.558 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 H 0.091 0.909 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.355 4.355 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.565 5.565 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.024 3.976 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.362 5.362 18 C 0.303 3.697 19 O -0.402 6.402 20 C -0.150 4.150 21 C -0.089 4.089 22 C 0.103 3.897 23 F -0.110 7.110 24 C -0.170 4.170 25 C -0.100 4.100 26 C -0.139 4.139 27 C -0.023 4.023 28 Cl -0.015 7.015 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.129 0.871 36 H 0.030 0.970 37 H 0.227 0.773 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.979 8.283 16.562 20.164 hybrid contribution 0.613 0.109 -0.835 1.042 sum -7.366 8.392 15.727 19.288 Atomic orbital electron populations 1.21735 0.95026 1.01849 1.00828 1.22432 0.95189 0.99158 0.96353 0.90881 1.21333 0.90246 0.93189 0.93715 1.44387 1.30594 1.50694 1.07264 1.19060 1.06169 1.17390 0.92876 0.90376 1.24811 0.98771 1.00545 0.96366 1.69804 1.29733 1.46083 1.10866 0.86088 0.80232 0.80309 0.78951 1.21666 1.21635 1.20660 1.22301 0.89267 1.01079 0.84948 1.22779 1.01057 0.92361 0.82379 0.89000 1.45795 1.74016 1.10854 1.05582 1.20070 0.76939 0.88788 0.83950 1.90744 1.48174 1.15248 1.86002 1.20684 1.06017 0.98064 0.90281 1.19113 0.91174 1.01437 0.97187 1.17256 0.81409 0.97085 0.93905 1.91508 1.49005 1.84472 1.85992 1.21178 1.00527 0.99344 0.95954 1.20926 0.90899 0.98391 0.99748 1.21096 0.99348 0.98721 0.94753 1.20576 0.87223 0.99457 0.95060 1.98419 1.27380 1.94479 1.81212 0.92533 0.93145 0.92903 0.95521 0.95929 0.93693 0.87104 0.96958 0.77256 0.87038 0.87585 0.84177 0.84102 0.84183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.14 37.16 0.34 -1.59 16 2 C -0.11 -1.91 3.18 -88.78 -0.28 -2.19 16 3 H 0.07 1.13 8.00 -51.93 -0.42 0.72 16 4 C 0.14 2.97 6.84 -3.07 -0.02 2.95 16 5 N -0.60 -15.82 3.40 -169.76 -0.58 -16.40 16 6 C -0.23 -6.47 10.27 -15.06 -0.15 -6.63 16 7 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.71 10.09 55.49 0.56 -27.15 16 10 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 C 0.15 3.78 5.61 -2.26 -0.01 3.77 16 15 C 0.12 2.36 2.89 -65.52 -0.19 2.18 16 16 H 0.09 2.04 7.45 -51.93 -0.39 1.66 16 17 N -0.71 -11.53 5.21 -51.47 -0.27 -11.80 16 18 C 0.52 8.84 7.82 -10.99 -0.09 8.76 16 19 O -0.53 -11.39 15.67 5.56 0.09 -11.30 16 20 C -0.11 -1.41 5.26 -29.03 -0.15 -1.56 16 21 C -0.09 -1.16 4.38 -104.52 -0.46 -1.62 16 22 C 0.12 1.55 7.24 -39.42 -0.29 1.26 16 23 F -0.13 -1.71 16.47 2.25 0.04 -1.67 16 24 C -0.15 -1.52 10.03 -39.51 -0.40 -1.91 16 25 C -0.08 -0.73 10.04 -39.60 -0.40 -1.12 16 26 C -0.12 -1.27 9.83 -39.54 -0.39 -1.65 16 27 C 0.00 0.05 6.31 -39.51 -0.25 -0.20 16 28 Cl -0.04 -0.61 27.30 -51.86 -1.42 -2.02 16 29 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.56 7.80 -51.93 -0.41 0.15 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 3.29 5.87 -51.93 -0.30 2.99 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.39 4.99 8.57 -40.82 -0.35 4.64 16 38 H 0.11 1.26 6.90 -51.93 -0.36 0.91 16 39 H 0.11 1.08 7.63 -51.93 -0.40 0.68 16 40 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -34.46 366.57 -9.45 -43.91 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.54 Total: 3.26 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.83 Total: 0.07 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.28 Total: -55.36 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.02 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.46 -9.45 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080839021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.253 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds