Wall clock time and date at job start Sat Apr 11 2020 05:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28459 * 124.88902 * 2 1 4 4 C 1.31798 * 110.11315 * 180.18166 * 3 2 1 5 5 C 1.47713 * 126.51364 * 179.81558 * 4 3 2 6 6 O 1.21572 * 119.99946 * 173.59907 * 5 4 3 7 7 N 1.34779 * 119.99640 * 353.60496 * 5 4 3 8 8 C 1.44955 * 117.34175 * 356.59020 * 7 5 4 9 9 C 1.51959 * 111.94131 * 203.77977 * 8 7 5 10 10 O 1.41330 * 111.60738 * 319.69539 * 9 8 7 11 11 C 1.40311 * 117.95654 * 57.08030 * 10 9 8 12 12 H 1.09003 * 109.01524 * 187.28035 * 11 10 9 13 13 C 1.53926 * 110.67580 * 67.93334 * 11 10 9 14 14 N 1.46775 * 107.61778 * 221.15993 * 13 11 10 15 15 C 1.36935 * 125.36102 * 178.65965 * 14 13 11 16 16 H 1.08006 * 119.99881 * 186.29595 * 15 14 13 17 17 C 1.38816 * 120.00090 * 6.30193 * 15 14 13 18 18 N 1.31614 * 120.00197 * 7.39364 * 17 15 14 19 19 Si 1.86803 * 119.99891 * 187.39909 * 17 15 14 20 20 H 1.48506 * 109.47074 * 84.98790 * 19 17 15 21 21 H 1.48500 * 109.47337 * 324.99028 * 19 17 15 22 22 H 1.48493 * 109.46994 * 204.98579 * 19 17 15 23 23 C 1.46868 * 109.27584 * 358.39887 * 14 13 11 24 24 C 1.44551 * 117.33679 * 176.61180 * 7 5 4 25 25 H 1.08996 * 109.64528 * 285.94806 * 24 7 5 26 26 C 1.41503 * 106.97458 * 359.55739 * 4 3 2 27 27 C 1.35066 * 124.88037 * 179.68762 * 2 1 3 28 28 Cl 1.73600 * 126.40350 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47063 * 270.31809 * 1 2 3 30 30 H 1.09002 * 109.46846 * 30.31288 * 1 2 3 31 31 H 1.08989 * 109.47489 * 150.31193 * 1 2 3 32 32 H 1.09000 * 108.98564 * 324.41149 * 8 7 5 33 33 H 1.09001 * 108.98792 * 83.22543 * 8 7 5 34 34 H 1.08999 * 109.05450 * 80.24568 * 9 8 7 35 35 H 1.08999 * 109.05583 * 199.21945 * 9 8 7 36 36 H 1.08999 * 109.95480 * 101.56667 * 13 11 10 37 37 H 1.09002 * 109.70063 * 340.61213 * 13 11 10 38 38 H 0.96993 * 120.00370 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.07157 * 137.29199 * 23 14 13 40 40 H 1.09004 * 110.06854 * 258.82066 * 23 14 13 41 41 H 1.08005 * 127.25541 * 180.26377 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0537 0.0000 4 6 3.4742 0.7176 -0.0039 5 6 4.6268 1.6413 -0.0091 6 8 5.7558 1.2052 0.1050 7 7 4.4267 2.9677 -0.1401 8 6 3.0647 3.4182 -0.3479 9 6 3.0132 4.7716 -1.0370 10 8 4.0091 5.6449 -0.5441 11 6 5.3463 5.2266 -0.6187 12 1 5.9727 5.9429 -0.0869 13 6 5.8138 5.1595 -2.0837 14 7 6.6239 3.9451 -2.2364 15 6 7.1999 3.5181 -3.4030 16 1 7.6942 2.5586 -3.4416 17 6 7.1486 4.3186 -4.5360 18 7 6.6775 5.5449 -4.4546 19 14 7.7482 3.6553 -6.1761 20 1 6.6528 2.8989 -6.8344 21 1 8.9068 2.7539 -5.9519 22 1 8.1614 4.7856 -7.0459 23 6 6.7246 3.2633 -0.9394 24 6 5.5879 3.8251 -0.0624 25 1 5.9237 3.8944 0.9722 26 6 3.5285 -0.6964 0.0038 27 6 2.2374 -1.1080 0.0060 28 17 1.6804 -2.7522 0.0144 29 1 -0.3633 0.0057 1.0277 30 1 -0.3633 0.8872 -0.5187 31 1 -0.3634 -0.8927 -0.5089 32 1 2.5392 2.6872 -0.9624 33 1 2.5649 3.4940 0.6178 34 1 3.1611 4.6316 -2.1078 35 1 2.0338 5.2195 -0.8690 36 1 6.4144 6.0370 -2.3231 37 1 4.9477 5.1116 -2.7439 38 1 6.6414 6.1041 -5.2463 39 1 6.5991 2.1886 -1.0710 40 1 7.6904 3.4742 -0.4800 41 1 4.4126 -1.3167 0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083138072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:11 Heat of formation + Delta-G solvation = 72.076617 kcal Electronic energy + Delta-G solvation = -28595.720468 eV Core-core repulsion = 24541.386319 eV Total energy + Delta-G solvation = -4054.334150 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.98973 -40.58550 -38.27475 -37.23625 -35.83108 -34.85046 -33.79302 -32.30005 -30.75901 -29.92745 -28.39608 -27.81623 -26.89310 -24.66179 -23.36312 -23.09264 -21.70252 -20.89006 -19.72473 -18.81205 -17.72444 -17.23424 -16.87914 -16.71928 -16.41468 -15.39227 -15.28210 -14.94448 -14.62373 -14.45263 -14.23763 -13.90996 -13.86339 -13.49443 -13.31294 -13.06521 -12.67721 -12.54170 -12.28166 -12.12707 -12.06751 -11.75295 -11.50610 -11.08313 -10.87087 -10.80670 -10.64132 -10.51589 -10.35556 -10.03208 -9.66219 -9.49768 -9.29828 -9.23495 -8.87245 -8.53601 -8.14699 -6.72187 -5.64760 -2.99435 1.17621 1.31730 1.75625 2.21971 3.11908 3.43582 3.45262 3.49227 3.51270 3.96064 4.20990 4.50053 4.56086 4.64566 4.85006 4.93713 4.98568 5.08982 5.24702 5.30819 5.42247 5.48899 5.56084 5.59182 5.78761 5.82876 5.89922 6.05159 6.09547 6.13779 6.21995 6.36445 6.60024 6.89577 7.23076 7.37307 7.45287 7.57461 7.68216 7.79983 7.93588 8.31032 8.38847 9.27640 9.88816 10.52738 11.45334 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003728 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.974441 B = 7509.861179 C = 8472.260617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.280 5.280 3 N -0.237 5.237 4 C 0.004 3.996 5 C 0.593 3.407 6 O -0.514 6.514 7 N -0.569 5.569 8 C 0.082 3.918 9 C 0.057 3.943 10 O -0.369 6.369 11 C 0.069 3.931 12 H 0.111 0.889 13 C 0.147 3.853 14 N -0.600 5.600 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.281 1.281 22 H -0.291 1.291 23 C 0.107 3.893 24 C 0.110 3.890 25 H 0.075 0.925 26 C -0.148 4.148 27 C 0.048 3.952 28 Cl 0.000 7.000 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 -10.659 11.808 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.070 5.070 3 N -0.075 5.075 4 C -0.155 4.155 5 C 0.378 3.622 6 O -0.388 6.388 7 N -0.301 5.301 8 C -0.042 4.042 9 C -0.021 4.021 10 O -0.286 6.286 11 C 0.010 3.990 12 H 0.129 0.871 13 C 0.022 3.978 14 N -0.328 5.328 15 C -0.350 4.350 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.741 3.259 20 H -0.218 1.218 21 H -0.207 1.207 22 H -0.217 1.217 23 C -0.019 4.019 24 C 0.006 3.994 25 H 0.093 0.907 26 C -0.177 4.177 27 C -0.102 4.102 28 Cl 0.027 6.973 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.576 -9.795 11.736 22.549 hybrid contribution 0.520 -1.411 -1.088 1.856 sum -16.056 -11.206 10.648 22.288 Atomic orbital electron populations 1.22275 0.72757 1.05959 1.04921 1.45643 1.08111 1.01780 1.51471 1.74011 1.03215 1.10952 1.19291 1.21926 0.90873 0.93729 1.08993 1.16933 0.86254 0.81289 0.77682 1.90711 1.21868 1.76806 1.49456 1.46453 1.07745 1.05714 1.70197 1.21906 0.82396 0.98175 1.01707 1.22285 0.92119 0.89145 0.98536 1.86810 1.14690 1.43901 1.83171 1.22839 0.82642 0.93330 1.00196 0.87119 1.21750 0.95428 0.91712 0.88898 1.44230 1.59452 1.24757 1.04314 1.19053 1.28980 1.00738 0.86193 0.90424 1.24781 1.01663 0.95930 0.98179 1.69935 1.52165 1.06980 1.27940 0.86150 0.78333 0.77578 0.83844 1.21762 1.20656 1.21736 1.22149 0.93278 1.00121 0.86303 1.21788 0.86059 0.91645 0.99915 0.90700 1.21466 0.95420 0.93874 1.06976 1.21897 0.91155 0.83555 1.13634 1.98398 1.89664 1.11841 1.97353 0.89222 0.87750 0.88555 0.88359 0.91584 0.92340 0.88101 0.91337 0.94453 0.93825 0.89364 0.95513 0.80866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 11.14 59.85 0.67 1.10 16 2 N -0.28 -2.89 3.70 -64.88 -0.24 -3.13 16 3 N -0.24 -3.09 8.42 33.42 0.28 -2.81 16 4 C 0.00 0.06 6.68 -82.77 -0.55 -0.49 16 5 C 0.59 10.85 7.17 -12.39 -0.09 10.76 16 6 O -0.51 -10.60 13.77 5.30 0.07 -10.52 16 7 N -0.57 -10.25 3.09 -169.99 -0.52 -10.77 16 8 C 0.08 1.24 5.15 -5.40 -0.03 1.21 16 9 C 0.06 0.89 6.71 36.63 0.25 1.14 16 10 O -0.37 -6.77 10.26 -33.50 -0.34 -7.11 16 11 C 0.07 1.37 3.76 -26.40 -0.10 1.27 16 12 H 0.11 2.02 8.14 -51.93 -0.42 1.59 16 13 C 0.15 3.66 5.08 -3.41 -0.02 3.65 16 14 N -0.60 -15.98 3.39 -171.42 -0.58 -16.56 16 15 C -0.22 -6.42 10.24 -15.06 -0.15 -6.57 16 16 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 17 C -0.01 -0.28 5.45 -17.43 -0.09 -0.37 16 18 N -0.92 -27.53 10.43 55.49 0.58 -26.95 16 19 Si 0.91 22.76 29.56 -169.99 -5.02 17.73 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 23 C 0.11 2.47 6.30 -3.23 -0.02 2.45 16 24 C 0.11 2.14 3.44 -68.51 -0.24 1.91 16 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 26 C -0.15 -1.98 10.80 -39.31 -0.42 -2.40 16 27 C 0.05 0.52 7.44 -17.10 -0.13 0.39 16 28 Cl 0.00 0.00 28.67 -51.86 -1.49 -1.49 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.36 7.71 -51.94 -0.40 -0.04 16 32 H 0.10 1.45 5.49 -51.93 -0.29 1.17 16 33 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.06 1.06 6.79 -51.93 -0.35 0.71 16 35 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.89 6.97 -51.93 -0.36 1.53 16 37 H 0.04 1.02 6.27 -51.93 -0.33 0.69 16 38 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.09 2.16 4.76 -52.70 -0.25 1.91 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 341.07 15.07 5.14 5.14 Total: -1.00 -34.29 341.07 -7.96 -42.25 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.90 Total: 0.18 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -0.93 Total: 14.04 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.49 Total: -60.21 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.27 Total: -17.64 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.49 Total: -1.49 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.29 -7.96 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083138072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.322 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds