Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28459 * 124.88902 * 2 1 4 4 C 1.31798 * 110.11315 * 180.18166 * 3 2 1 5 5 C 1.47713 * 126.51364 * 179.81558 * 4 3 2 6 6 O 1.21572 * 119.99946 * 173.59907 * 5 4 3 7 7 N 1.34779 * 119.99640 * 353.60496 * 5 4 3 8 8 C 1.44955 * 117.34175 * 356.59020 * 7 5 4 9 9 C 1.51959 * 111.94131 * 203.77977 * 8 7 5 10 10 O 1.41330 * 111.60738 * 319.69539 * 9 8 7 11 11 C 1.40311 * 117.95654 * 57.08030 * 10 9 8 12 12 H 1.09003 * 109.01524 * 187.28035 * 11 10 9 13 13 C 1.53926 * 110.67580 * 67.93334 * 11 10 9 14 14 N 1.46775 * 107.61778 * 221.15993 * 13 11 10 15 15 C 1.36935 * 125.36102 * 178.65965 * 14 13 11 16 16 H 1.08006 * 119.99881 * 186.29595 * 15 14 13 17 17 C 1.38816 * 120.00090 * 6.30193 * 15 14 13 18 18 N 1.31614 * 120.00197 * 7.39364 * 17 15 14 19 19 Si 1.86803 * 119.99891 * 187.39909 * 17 15 14 20 20 H 1.48506 * 109.47074 * 84.98790 * 19 17 15 21 21 H 1.48500 * 109.47337 * 324.99028 * 19 17 15 22 22 H 1.48493 * 109.46994 * 204.98579 * 19 17 15 23 23 C 1.46868 * 109.27584 * 358.39887 * 14 13 11 24 24 C 1.44551 * 117.33679 * 176.61180 * 7 5 4 25 25 H 1.08996 * 109.64528 * 285.94806 * 24 7 5 26 26 C 1.41503 * 106.97458 * 359.55739 * 4 3 2 27 27 C 1.35066 * 124.88037 * 179.68762 * 2 1 3 28 28 Cl 1.73600 * 126.40350 * 0.02562 * 27 2 1 29 29 H 1.09001 * 109.47063 * 270.31809 * 1 2 3 30 30 H 1.09002 * 109.46846 * 30.31288 * 1 2 3 31 31 H 1.08989 * 109.47489 * 150.31193 * 1 2 3 32 32 H 1.09000 * 108.98564 * 324.41149 * 8 7 5 33 33 H 1.09001 * 108.98792 * 83.22543 * 8 7 5 34 34 H 1.08999 * 109.05450 * 80.24568 * 9 8 7 35 35 H 1.08999 * 109.05583 * 199.21945 * 9 8 7 36 36 H 1.08999 * 109.95480 * 101.56667 * 13 11 10 37 37 H 1.09002 * 109.70063 * 340.61213 * 13 11 10 38 38 H 0.96993 * 120.00370 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.07157 * 137.29199 * 23 14 13 40 40 H 1.09004 * 110.06854 * 258.82066 * 23 14 13 41 41 H 1.08005 * 127.25541 * 180.26377 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0537 0.0000 4 6 3.4742 0.7176 -0.0039 5 6 4.6268 1.6413 -0.0091 6 8 5.7558 1.2052 0.1050 7 7 4.4267 2.9677 -0.1401 8 6 3.0647 3.4182 -0.3479 9 6 3.0132 4.7716 -1.0370 10 8 4.0091 5.6449 -0.5441 11 6 5.3463 5.2266 -0.6187 12 1 5.9727 5.9429 -0.0869 13 6 5.8138 5.1595 -2.0837 14 7 6.6239 3.9451 -2.2364 15 6 7.1999 3.5181 -3.4030 16 1 7.6942 2.5586 -3.4416 17 6 7.1486 4.3186 -4.5360 18 7 6.6775 5.5449 -4.4546 19 14 7.7482 3.6553 -6.1761 20 1 6.6528 2.8989 -6.8344 21 1 8.9068 2.7539 -5.9519 22 1 8.1614 4.7856 -7.0459 23 6 6.7246 3.2633 -0.9394 24 6 5.5879 3.8251 -0.0624 25 1 5.9237 3.8944 0.9722 26 6 3.5285 -0.6964 0.0038 27 6 2.2374 -1.1080 0.0060 28 17 1.6804 -2.7522 0.0144 29 1 -0.3633 0.0057 1.0277 30 1 -0.3633 0.8872 -0.5187 31 1 -0.3634 -0.8927 -0.5089 32 1 2.5392 2.6872 -0.9624 33 1 2.5649 3.4940 0.6178 34 1 3.1611 4.6316 -2.1078 35 1 2.0338 5.2195 -0.8690 36 1 6.4144 6.0370 -2.3231 37 1 4.9477 5.1116 -2.7439 38 1 6.6414 6.1041 -5.2463 39 1 6.5991 2.1886 -1.0710 40 1 7.6904 3.4742 -0.4800 41 1 4.4126 -1.3167 0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083138072.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = 47.788562 kcal Electronic energy + Delta-G solvation = -28596.773677 eV Core-core repulsion = 24541.386319 eV Total energy + Delta-G solvation = -4055.387359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.93608 -42.05865 -39.74147 -38.01141 -37.62361 -36.26707 -34.77393 -34.14511 -31.85976 -31.55965 -29.67867 -29.49999 -28.12319 -26.54409 -24.76629 -24.38461 -22.66848 -22.53155 -21.18865 -20.22010 -19.12519 -18.74671 -18.26397 -17.88645 -17.68430 -16.98117 -16.74425 -16.37845 -16.21919 -15.79034 -15.57796 -15.20120 -15.14708 -15.03201 -14.35340 -14.19381 -13.85117 -13.81393 -13.56088 -13.51411 -13.21614 -13.12678 -13.04094 -12.81485 -12.63224 -12.40290 -12.21123 -12.13739 -11.98815 -11.82690 -11.57632 -10.99244 -10.76959 -10.45870 -10.27006 -10.13123 -9.59018 -8.87552 -7.86423 -5.24453 0.28954 0.35200 0.72860 1.41169 1.42359 1.44563 1.53440 1.86132 2.16146 2.46402 2.77411 2.99823 3.29481 3.39918 3.66595 3.72509 3.77482 3.93739 4.08397 4.12946 4.20537 4.29488 4.32645 4.37170 4.38762 4.53282 4.56725 4.62506 4.74212 4.86775 5.00825 5.02299 5.10745 5.34387 5.39879 5.50103 5.62733 5.66136 6.13080 6.17450 6.37648 6.56103 6.99575 7.08034 7.74063 8.36552 9.21451 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003728 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.974441 B = 7509.861179 C = 8472.260617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.265 5.265 3 N -0.233 5.233 4 C -0.028 4.028 5 C 0.588 3.412 6 O -0.549 6.549 7 N -0.577 5.577 8 C 0.086 3.914 9 C 0.053 3.947 10 O -0.368 6.368 11 C 0.085 3.915 12 H 0.131 0.869 13 C 0.159 3.841 14 N -0.617 5.617 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.059 4.059 18 N -0.946 5.946 19 Si 0.977 3.023 20 H -0.286 1.286 21 H -0.271 1.271 22 H -0.289 1.289 23 C 0.105 3.895 24 C 0.120 3.880 25 H 0.099 0.901 26 C -0.168 4.168 27 C 0.056 3.944 28 Cl 0.027 6.973 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.027 0.973 35 H 0.146 0.854 36 H 0.034 0.966 37 H 0.006 0.994 38 H 0.248 0.752 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.855 -11.756 12.710 25.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.056 5.056 3 N -0.072 5.072 4 C -0.185 4.185 5 C 0.375 3.625 6 O -0.426 6.426 7 N -0.309 5.309 8 C -0.037 4.037 9 C -0.024 4.024 10 O -0.285 6.285 11 C 0.026 3.974 12 H 0.148 0.852 13 C 0.034 3.966 14 N -0.345 5.345 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.805 3.195 20 H -0.213 1.213 21 H -0.196 1.196 22 H -0.215 1.215 23 C -0.020 4.020 24 C 0.016 3.984 25 H 0.116 0.884 26 C -0.197 4.197 27 C -0.095 4.095 28 Cl 0.055 6.945 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.045 0.955 35 H 0.164 0.836 36 H 0.052 0.948 37 H 0.024 0.976 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.199 -10.900 12.660 25.450 hybrid contribution 1.175 -1.183 -1.369 2.158 sum -18.024 -12.084 11.292 24.462 Atomic orbital electron populations 1.22808 0.69603 1.07726 1.07056 1.46113 1.09684 1.00952 1.48874 1.73888 1.02386 1.11914 1.19008 1.21501 0.90923 0.93866 1.12182 1.17345 0.86830 0.81571 0.76711 1.90670 1.23513 1.77375 1.51079 1.46594 1.08337 1.05710 1.70225 1.22043 0.81058 0.97539 1.03014 1.22561 0.93247 0.89867 0.96706 1.86820 1.14083 1.44669 1.82892 1.22598 0.83949 0.94266 0.96624 0.85183 1.21502 0.93407 0.89763 0.91967 1.44470 1.59413 1.25598 1.04991 1.19338 1.29442 1.00811 0.87697 0.90956 1.25599 1.02061 0.96193 1.01420 1.70150 1.52929 1.07903 1.28451 0.85126 0.78032 0.77027 0.79359 1.21336 1.19627 1.21473 1.22209 0.94894 0.99316 0.85600 1.21597 0.85682 0.91085 1.00078 0.88358 1.21552 0.96745 0.93312 1.08055 1.21876 0.90573 0.84939 1.12161 1.98414 1.89234 1.09646 1.97162 0.86848 0.86307 0.86618 0.87949 0.88945 0.95465 0.83614 0.94816 0.97580 0.94236 0.90749 0.95719 0.81068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.14 127.77 1.42 1.87 16 2 N -0.26 -4.74 3.70 -359.17 -1.33 -6.07 16 3 N -0.23 -5.59 8.42 -48.18 -0.41 -5.99 16 4 C -0.03 -0.83 6.68 42.46 0.28 -0.55 16 5 C 0.59 21.74 7.17 86.75 0.62 22.36 16 6 O -0.55 -23.41 13.77 -3.94 -0.05 -23.47 16 7 N -0.58 -20.55 3.09 -809.99 -2.50 -23.05 16 8 C 0.09 2.45 5.15 86.33 0.44 2.90 16 9 C 0.05 1.59 6.71 71.64 0.48 2.07 16 10 O -0.37 -13.06 10.26 -142.79 -1.46 -14.52 16 11 C 0.09 3.37 3.76 30.81 0.12 3.49 16 12 H 0.13 4.63 8.14 -2.39 -0.02 4.61 16 13 C 0.16 8.22 5.08 86.64 0.44 8.66 16 14 N -0.62 -34.18 3.39 -696.26 -2.36 -36.54 16 15 C -0.24 -14.65 10.24 84.03 0.86 -13.79 16 16 H 0.07 4.29 7.84 -2.91 -0.02 4.27 16 17 C -0.06 -3.52 5.45 84.86 0.46 -3.05 16 18 N -0.95 -58.32 10.43 21.65 0.23 -58.09 16 19 Si 0.98 47.69 29.56 68.60 2.03 49.72 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 C 0.10 4.98 6.30 86.71 0.55 5.53 16 24 C 0.12 4.66 3.44 45.65 0.16 4.82 16 25 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 26 C -0.17 -4.39 10.80 22.44 0.24 -4.15 16 27 C 0.06 1.10 7.44 83.56 0.62 1.72 16 28 Cl 0.03 0.39 28.67 -2.72 -0.08 0.31 16 29 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 0.39 7.71 -2.39 -0.02 0.37 16 32 H 0.10 2.87 5.49 -2.39 -0.01 2.86 16 33 H 0.09 2.20 8.06 -2.39 -0.02 2.18 16 34 H 0.03 0.99 6.79 -2.39 -0.02 0.98 16 35 H 0.15 3.07 8.14 -2.39 -0.02 3.05 16 36 H 0.03 1.96 6.97 -2.39 -0.02 1.94 16 37 H 0.01 0.35 6.27 -2.39 -0.01 0.33 16 38 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.07 3.81 4.76 -14.66 -0.07 3.74 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -77.77 341.07 1.78 -75.99 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 1.02 Total: 9.83 kcal Atomic # 6 Polarization: 25.18 SS G_CDS: 6.70 Total: 31.88 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -6.37 Total: -129.74 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.52 Total: -37.99 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.08 Total: 0.31 kcal Total: -77.77 1.78 -75.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083138072.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.777 kcal (2) G-P(sol) polarization free energy of solvation -77.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds