Wall clock time and date at job start Sat Apr 11 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.99591 * 2 1 4 4 C 1.54320 * 109.88359 * 238.90659 * 2 1 3 5 5 H 1.09007 * 110.72146 * 336.92318 * 4 2 1 6 6 N 1.46498 * 110.72369 * 100.02468 * 4 2 1 7 7 C 1.34774 * 119.99943 * 202.55717 * 6 4 2 8 8 O 1.21279 * 120.00318 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99739 * 179.97438 * 7 6 4 10 10 C 1.50698 * 109.46875 * 180.02562 * 9 7 6 11 11 C 1.38246 * 119.98080 * 100.00522 * 10 9 7 12 12 C 1.38183 * 120.04239 * 180.02562 * 11 10 9 13 13 C 1.38497 * 119.99938 * 359.97438 * 12 11 10 14 14 F 1.35095 * 120.02079 * 180.02562 * 13 12 11 15 15 C 1.38421 * 119.95819 * 359.97438 * 13 12 11 16 16 C 1.38330 * 119.96340 * 0.28095 * 15 13 12 17 17 Cl 1.73599 * 120.00101 * 179.69370 * 16 15 13 18 18 C 1.55165 * 103.09978 * 218.47977 * 4 2 1 19 19 C 1.54903 * 101.58271 * 35.41121 * 18 4 2 20 20 N 1.47321 * 110.06192 * 121.17136 * 2 1 3 21 21 C 1.36935 * 125.61471 * 298.24440 * 20 2 1 22 22 H 1.08004 * 120.00190 * 359.84132 * 21 20 2 23 23 C 1.38818 * 119.99863 * 179.84250 * 21 20 2 24 24 N 1.31620 * 119.99728 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47190 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47141 * 119.99902 * 25 23 21 28 28 H 1.48497 * 109.46875 * 239.99726 * 25 23 21 29 29 H 1.09004 * 109.47151 * 181.09235 * 1 2 3 30 30 H 1.08996 * 109.47531 * 301.09539 * 1 2 3 31 31 H 1.09004 * 109.47135 * 61.09584 * 1 2 3 32 32 H 0.96996 * 119.99574 * 22.56270 * 6 4 2 33 33 H 1.09004 * 109.47260 * 59.99880 * 9 7 6 34 34 H 1.09004 * 109.47248 * 300.00386 * 9 7 6 35 35 H 1.08003 * 119.98222 * 0.02562 * 11 10 9 36 36 H 1.08000 * 120.00185 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.01402 * 179.97438 * 15 13 12 38 38 H 1.08999 * 110.99896 * 153.48770 * 18 4 2 39 39 H 1.09005 * 111.00069 * 277.29744 * 18 4 2 40 40 H 1.09000 * 110.36738 * 81.82766 * 19 18 4 41 41 H 1.09001 * 110.37004 * 204.15567 * 19 18 4 42 42 H 0.96998 * 119.99639 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3040 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.5055 -0.2026 -3.5740 8 8 2.2185 -1.3440 -3.8668 9 6 2.9171 0.7703 -4.6488 10 6 2.8906 0.0799 -5.9881 11 6 1.8138 0.2588 -6.8363 12 6 1.7880 -0.3740 -8.0644 13 6 2.8416 -1.1877 -8.4464 14 9 2.8170 -1.8063 -9.6472 15 6 3.9203 -1.3660 -7.5975 16 6 3.9420 -0.7359 -6.3663 17 17 5.2907 -0.9651 -5.2976 18 6 3.2870 -1.5177 -0.6957 19 6 2.8161 -1.8831 0.7341 20 7 2.0353 -0.7163 1.1840 21 6 1.8140 -0.3584 2.4871 22 1 1.2260 0.5186 2.7139 23 6 2.3456 -1.1229 3.5167 24 7 3.0619 -2.1920 3.2403 25 14 2.0431 -0.6352 5.2943 26 1 1.2136 0.5958 5.3356 27 1 1.3330 -1.7349 5.9954 28 1 3.3428 -0.3784 5.9651 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3634 0.5307 0.8799 31 1 -0.3633 0.4967 -0.8997 32 1 2.6847 1.1090 -2.0533 33 1 3.9253 1.1313 -4.4455 34 1 2.2253 1.6126 -4.6608 35 1 0.9921 0.8936 -6.5390 36 1 0.9462 -0.2342 -8.7264 37 1 4.7422 -2.0007 -7.8943 38 1 3.4811 -2.4144 -1.2842 39 1 4.1666 -0.8746 -0.6657 40 1 2.1880 -2.7736 0.7107 41 1 3.6742 -2.0401 1.3876 42 1 3.4330 -2.7264 3.9597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088836434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:21 Heat of formation + Delta-G solvation = -39.322584 kcal Electronic energy + Delta-G solvation = -26800.701352 eV Core-core repulsion = 22721.616608 eV Total energy + Delta-G solvation = -4079.084743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.24440 -40.22901 -39.07120 -37.47158 -36.68272 -34.00778 -32.98666 -31.95015 -31.29116 -30.38174 -28.86802 -27.48223 -24.61727 -23.99517 -23.50379 -22.31126 -20.57481 -20.13940 -19.59176 -18.15204 -17.14137 -16.98154 -16.74673 -16.27282 -15.93503 -15.54840 -15.01206 -14.93499 -14.62520 -14.16419 -13.96404 -13.91797 -13.82204 -13.46913 -13.03744 -12.80345 -12.40156 -12.28031 -12.14215 -11.86973 -11.61402 -11.60047 -11.56126 -11.15816 -11.14875 -10.87783 -10.85527 -10.54673 -10.42305 -10.08141 -9.78353 -9.73325 -9.57060 -9.29222 -8.86781 -8.69769 -8.60747 -6.89145 -5.67006 -3.09940 0.64500 0.74029 1.80722 2.77319 2.98399 3.37834 3.42221 3.45764 3.48413 3.88106 4.23528 4.34803 4.46522 4.52850 4.75481 4.88523 5.04026 5.14496 5.27510 5.29690 5.40925 5.53706 5.55634 5.56849 5.62711 5.72475 5.81836 5.93257 6.10568 6.24290 6.29298 6.34102 6.36645 6.53351 6.59427 6.71923 6.85328 7.10040 7.51107 7.61034 7.71471 7.84082 8.32902 8.40532 9.18969 9.79763 10.43708 11.36292 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.002382 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.303425 B =11754.319345 C =12275.311182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.136 3.864 5 H 0.092 0.908 6 N -0.715 5.715 7 C 0.515 3.485 8 O -0.531 6.531 9 C -0.109 4.109 10 C -0.063 4.063 11 C -0.068 4.068 12 C -0.149 4.149 13 C 0.109 3.891 14 F -0.135 7.135 15 C -0.147 4.147 16 C 0.010 3.990 17 Cl -0.047 7.047 18 C -0.152 4.152 19 C 0.153 3.847 20 N -0.596 5.596 21 C -0.220 4.220 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.109 0.891 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 7.667 -22.603 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.032 3.968 5 H 0.110 0.890 6 N -0.366 5.366 7 C 0.300 3.700 8 O -0.408 6.408 9 C -0.149 4.149 10 C -0.065 4.065 11 C -0.086 4.086 12 C -0.168 4.168 13 C 0.090 3.910 14 F -0.113 7.113 15 C -0.166 4.166 16 C -0.017 4.017 17 Cl -0.018 7.018 18 C -0.191 4.191 19 C 0.028 3.972 20 N -0.321 5.321 21 C -0.348 4.348 22 H 0.096 0.904 23 C -0.207 4.207 24 N -0.569 5.569 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.232 0.768 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.032 0.968 41 H 0.126 0.874 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.701 6.711 -22.519 23.508 hybrid contribution 0.009 0.423 0.922 1.015 sum 0.710 7.134 -21.597 22.756 Atomic orbital electron populations 1.22229 0.97894 1.01430 0.99866 1.21049 0.92523 0.94788 0.86979 0.94619 1.22140 0.97601 0.90759 0.86308 0.89039 1.46040 1.68983 1.15131 1.06447 1.20195 0.77879 0.88689 0.83203 1.90729 1.48294 1.19608 1.82129 1.20748 1.05246 0.98490 0.90426 1.19238 0.93543 0.97874 0.95799 1.20840 0.96866 0.98540 0.92342 1.21187 0.98697 0.98580 0.98309 1.17444 0.95752 0.95850 0.81991 1.91521 1.96595 1.80873 1.42348 1.20925 0.99624 1.02773 0.93320 1.20454 0.91096 0.98537 0.91649 1.98407 1.43423 1.95716 1.64268 1.23380 0.96741 0.99323 0.99703 1.21942 0.97384 0.88312 0.89556 1.44575 1.59288 1.28152 1.00068 1.19066 1.27202 1.08007 0.80512 0.90422 1.24795 1.00425 0.97377 0.98055 1.69810 1.39272 1.17705 1.30083 0.86013 0.77341 0.77523 0.84694 1.20559 1.21775 1.21774 0.92950 0.92742 0.94345 0.76827 0.87343 0.87385 0.83968 0.84044 0.83664 0.92056 0.92060 0.96836 0.87363 0.93743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.15 37.16 0.34 -2.45 16 2 C 0.15 3.00 3.49 -66.79 -0.23 2.77 16 3 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 4 C 0.14 2.40 2.79 -66.09 -0.18 2.22 16 5 H 0.09 1.76 7.33 -51.93 -0.38 1.38 16 6 N -0.72 -9.72 5.19 -52.03 -0.27 -9.99 16 7 C 0.52 6.94 7.57 -10.99 -0.08 6.86 16 8 O -0.53 -9.30 15.63 5.56 0.09 -9.22 16 9 C -0.11 -1.00 5.29 -29.04 -0.15 -1.15 16 10 C -0.06 -0.64 4.43 -104.58 -0.46 -1.10 16 11 C -0.07 -0.57 9.66 -39.60 -0.38 -0.95 16 12 C -0.15 -1.26 10.03 -39.51 -0.40 -1.65 16 13 C 0.11 1.08 7.30 -39.42 -0.29 0.79 16 14 F -0.13 -1.38 17.27 2.25 0.04 -1.34 16 15 C -0.15 -1.50 9.81 -39.48 -0.39 -1.89 16 16 C 0.01 0.11 6.18 -39.51 -0.24 -0.14 16 17 Cl -0.05 -0.55 27.31 -51.86 -1.42 -1.96 16 18 C -0.15 -2.99 6.77 -24.58 -0.17 -3.15 16 19 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 20 N -0.60 -14.60 3.14 -162.35 -0.51 -15.11 16 21 C -0.22 -5.89 9.91 -15.06 -0.15 -6.04 16 22 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -26.50 10.09 55.49 0.56 -25.94 16 25 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.01 8.06 -51.93 -0.42 0.59 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.40 4.33 8.34 -40.82 -0.34 3.99 16 33 H 0.11 0.87 7.37 -51.93 -0.38 0.49 16 34 H 0.11 0.65 8.00 -51.93 -0.42 0.24 16 35 H 0.14 0.84 8.04 -52.48 -0.42 0.41 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -31.86 366.94 -9.48 -41.34 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.57 Total: 2.60 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.90 Total: -2.60 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.22 Total: -51.03 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.86 -9.48 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088836434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.014 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds