Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.99591 * 2 1 4 4 C 1.54320 * 109.88359 * 238.90659 * 2 1 3 5 5 H 1.09007 * 110.72146 * 336.92318 * 4 2 1 6 6 N 1.46498 * 110.72369 * 100.02468 * 4 2 1 7 7 C 1.34774 * 119.99943 * 202.55717 * 6 4 2 8 8 O 1.21279 * 120.00318 * 0.02562 * 7 6 4 9 9 C 1.50702 * 119.99739 * 179.97438 * 7 6 4 10 10 C 1.50698 * 109.46875 * 180.02562 * 9 7 6 11 11 C 1.38246 * 119.98080 * 100.00522 * 10 9 7 12 12 C 1.38183 * 120.04239 * 180.02562 * 11 10 9 13 13 C 1.38497 * 119.99938 * 359.97438 * 12 11 10 14 14 F 1.35095 * 120.02079 * 180.02562 * 13 12 11 15 15 C 1.38421 * 119.95819 * 359.97438 * 13 12 11 16 16 C 1.38330 * 119.96340 * 0.28095 * 15 13 12 17 17 Cl 1.73599 * 120.00101 * 179.69370 * 16 15 13 18 18 C 1.55165 * 103.09978 * 218.47977 * 4 2 1 19 19 C 1.54903 * 101.58271 * 35.41121 * 18 4 2 20 20 N 1.47321 * 110.06192 * 121.17136 * 2 1 3 21 21 C 1.36935 * 125.61471 * 298.24440 * 20 2 1 22 22 H 1.08004 * 120.00190 * 359.84132 * 21 20 2 23 23 C 1.38818 * 119.99863 * 179.84250 * 21 20 2 24 24 N 1.31620 * 119.99728 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47190 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47141 * 119.99902 * 25 23 21 28 28 H 1.48497 * 109.46875 * 239.99726 * 25 23 21 29 29 H 1.09004 * 109.47151 * 181.09235 * 1 2 3 30 30 H 1.08996 * 109.47531 * 301.09539 * 1 2 3 31 31 H 1.09004 * 109.47135 * 61.09584 * 1 2 3 32 32 H 0.96996 * 119.99574 * 22.56270 * 6 4 2 33 33 H 1.09004 * 109.47260 * 59.99880 * 9 7 6 34 34 H 1.09004 * 109.47248 * 300.00386 * 9 7 6 35 35 H 1.08003 * 119.98222 * 0.02562 * 11 10 9 36 36 H 1.08000 * 120.00185 * 179.97438 * 12 11 10 37 37 H 1.08002 * 120.01402 * 179.97438 * 15 13 12 38 38 H 1.08999 * 110.99896 * 153.48770 * 18 4 2 39 39 H 1.09005 * 111.00069 * 277.29744 * 18 4 2 40 40 H 1.09000 * 110.36738 * 81.82766 * 19 18 4 41 41 H 1.09001 * 110.37004 * 204.15567 * 19 18 4 42 42 H 0.96998 * 119.99639 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3040 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.5055 -0.2026 -3.5740 8 8 2.2185 -1.3440 -3.8668 9 6 2.9171 0.7703 -4.6488 10 6 2.8906 0.0799 -5.9881 11 6 1.8138 0.2588 -6.8363 12 6 1.7880 -0.3740 -8.0644 13 6 2.8416 -1.1877 -8.4464 14 9 2.8170 -1.8063 -9.6472 15 6 3.9203 -1.3660 -7.5975 16 6 3.9420 -0.7359 -6.3663 17 17 5.2907 -0.9651 -5.2976 18 6 3.2870 -1.5177 -0.6957 19 6 2.8161 -1.8831 0.7341 20 7 2.0353 -0.7163 1.1840 21 6 1.8140 -0.3584 2.4871 22 1 1.2260 0.5186 2.7139 23 6 2.3456 -1.1229 3.5167 24 7 3.0619 -2.1920 3.2403 25 14 2.0431 -0.6352 5.2943 26 1 1.2136 0.5958 5.3356 27 1 1.3330 -1.7349 5.9954 28 1 3.3428 -0.3784 5.9651 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3634 0.5307 0.8799 31 1 -0.3633 0.4967 -0.8997 32 1 2.6847 1.1090 -2.0533 33 1 3.9253 1.1313 -4.4455 34 1 2.2253 1.6126 -4.6608 35 1 0.9921 0.8936 -6.5390 36 1 0.9462 -0.2342 -8.7264 37 1 4.7422 -2.0007 -7.8943 38 1 3.4811 -2.4144 -1.2842 39 1 4.1666 -0.8746 -0.6657 40 1 2.1880 -2.7736 0.7107 41 1 3.6742 -2.0401 1.3876 42 1 3.4330 -2.7264 3.9597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088836434.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = -57.882315 kcal Electronic energy + Delta-G solvation = -26801.506162 eV Core-core repulsion = 22721.616608 eV Total energy + Delta-G solvation = -4079.889554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.99646 -41.21495 -40.10173 -38.94240 -37.48849 -35.53219 -34.00725 -33.46953 -32.03189 -31.97414 -30.54532 -28.47903 -26.25039 -25.73557 -24.19237 -23.18877 -22.10415 -21.49858 -21.07799 -18.88733 -18.70218 -18.06493 -17.79568 -17.44657 -16.81854 -16.68859 -16.33275 -16.00938 -15.73450 -15.64628 -15.28062 -14.90181 -14.75336 -14.60944 -14.34043 -14.01978 -13.87117 -13.72872 -13.21123 -13.04352 -12.97582 -12.88573 -12.73256 -12.59444 -12.36908 -12.26466 -12.19664 -12.04838 -11.97298 -11.92581 -11.55966 -11.41996 -10.88108 -10.73023 -10.01033 -9.93725 -9.61915 -8.88539 -7.73675 -5.18507 -0.08153 0.04845 1.02227 1.48931 1.49505 1.59522 1.74148 2.11278 2.48028 2.58214 3.17397 3.37187 3.55293 3.59490 3.66020 3.89489 3.91317 3.98643 4.03237 4.11230 4.25366 4.38050 4.50233 4.52409 4.65081 4.67799 4.71701 4.83478 4.88187 4.89860 4.99230 5.07215 5.08399 5.17808 5.25571 5.40864 5.51710 5.61252 5.68853 5.69749 5.81308 6.31616 6.66685 7.12328 7.36661 7.80427 8.44070 9.28432 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.002382 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.303425 B =11754.319345 C =12275.311182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.056 0.944 4 C 0.156 3.844 5 H 0.077 0.923 6 N -0.706 5.706 7 C 0.516 3.484 8 O -0.573 6.573 9 C -0.100 4.100 10 C -0.076 4.076 11 C -0.064 4.064 12 C -0.145 4.145 13 C 0.096 3.904 14 F -0.141 7.141 15 C -0.159 4.159 16 C -0.008 4.008 17 Cl -0.062 7.062 18 C -0.137 4.137 19 C 0.158 3.842 20 N -0.615 5.615 21 C -0.222 4.222 22 H 0.087 0.913 23 C -0.072 4.072 24 N -0.952 5.952 25 Si 0.977 3.023 26 H -0.263 1.263 27 H -0.298 1.298 28 H -0.294 1.294 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.415 0.585 33 H 0.122 0.878 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.059 0.941 39 H 0.068 0.932 40 H -0.019 1.019 41 H 0.075 0.925 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 10.557 -23.989 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.074 0.926 4 C 0.050 3.950 5 H 0.095 0.905 6 N -0.358 5.358 7 C 0.303 3.697 8 O -0.452 6.452 9 C -0.140 4.140 10 C -0.077 4.077 11 C -0.082 4.082 12 C -0.163 4.163 13 C 0.076 3.924 14 F -0.119 7.119 15 C -0.178 4.178 16 C -0.035 4.035 17 Cl -0.033 7.033 18 C -0.177 4.177 19 C 0.033 3.967 20 N -0.340 5.340 21 C -0.351 4.351 22 H 0.105 0.895 23 C -0.264 4.264 24 N -0.603 5.603 25 Si 0.806 3.194 26 H -0.187 1.187 27 H -0.226 1.226 28 H -0.221 1.221 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.252 0.748 33 H 0.140 0.860 34 H 0.168 0.832 35 H 0.193 0.807 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.078 0.922 39 H 0.087 0.913 40 H -0.001 1.001 41 H 0.093 0.907 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.618 9.666 -23.941 25.826 hybrid contribution 0.385 -0.484 1.255 1.399 sum -0.233 9.182 -22.687 24.475 Atomic orbital electron populations 1.22114 0.96473 1.00573 1.01352 1.21280 0.93494 0.95181 0.85684 0.92607 1.21634 0.95782 0.90885 0.86711 0.90500 1.45834 1.68926 1.15221 1.05783 1.20936 0.76455 0.88785 0.83479 1.90725 1.50025 1.21768 1.82708 1.20792 1.07034 0.98156 0.87970 1.19495 0.93719 0.97952 0.96567 1.21243 0.96933 0.98249 0.91731 1.21533 0.98705 0.97375 0.98736 1.17659 0.96336 0.96516 0.81882 1.91505 1.96655 1.81110 1.42651 1.21040 1.00189 1.03104 0.93513 1.20640 0.91387 0.99635 0.91811 1.98396 1.44274 1.95893 1.64718 1.23162 0.97946 0.99809 0.96791 1.21635 0.95635 0.87746 0.91720 1.44821 1.59762 1.28441 1.00972 1.19445 1.26147 1.07806 0.81737 0.89510 1.25620 1.01032 0.97785 1.01949 1.70064 1.40701 1.18923 1.30592 0.85012 0.76974 0.77428 0.79955 1.18716 1.22557 1.22099 0.94902 0.93450 0.90664 0.74777 0.86008 0.83171 0.80738 0.81551 0.83378 0.92221 0.91291 1.00076 0.90694 0.94567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.15 71.98 0.66 -4.30 16 2 C 0.15 5.57 3.49 45.28 0.16 5.73 16 3 H 0.06 1.90 7.70 -2.39 -0.02 1.88 16 4 C 0.16 5.28 2.79 46.18 0.13 5.41 16 5 H 0.08 2.89 7.33 -2.38 -0.02 2.87 16 6 N -0.71 -17.05 5.19 -436.91 -2.27 -19.32 16 7 C 0.52 12.46 7.57 87.66 0.66 13.12 16 8 O -0.57 -19.20 15.63 -3.03 -0.05 -19.25 16 9 C -0.10 -1.45 5.29 29.10 0.15 -1.30 16 10 C -0.08 -1.33 4.43 -19.84 -0.09 -1.41 16 11 C -0.06 -0.84 9.66 22.26 0.22 -0.63 16 12 C -0.14 -2.04 10.03 22.32 0.22 -1.81 16 13 C 0.10 1.76 7.30 22.38 0.16 1.92 16 14 F -0.14 -2.75 17.27 44.97 0.78 -1.98 16 15 C -0.16 -3.16 9.81 22.34 0.22 -2.94 16 16 C -0.01 -0.16 6.18 22.32 0.14 -0.03 16 17 Cl -0.06 -1.39 27.31 -2.72 -0.07 -1.47 16 18 C -0.14 -5.42 6.77 31.99 0.22 -5.20 16 19 C 0.16 7.94 5.89 86.85 0.51 8.45 16 20 N -0.61 -30.22 3.14 -667.56 -2.10 -32.32 16 21 C -0.22 -11.92 9.91 84.04 0.83 -11.08 16 22 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 23 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 24 N -0.95 -56.82 10.09 21.65 0.22 -56.60 16 25 Si 0.98 45.05 29.55 68.60 2.03 47.08 16 26 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 28 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 29 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 1.66 8.06 -2.39 -0.02 1.64 16 31 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.42 7.33 8.34 -92.71 -0.77 6.55 16 33 H 0.12 1.51 7.37 -2.39 -0.02 1.49 16 34 H 0.15 0.93 8.00 -2.39 -0.02 0.91 16 35 H 0.18 1.12 8.04 -2.91 -0.02 1.10 16 36 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.08 4.28 5.87 -2.39 -0.01 4.27 16 42 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -71.96 366.94 3.48 -68.48 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.28 Total: 12.98 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 4.66 Total: 2.39 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.14 Total: -108.24 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.07 Total: -1.47 kcal Total: -71.96 3.48 -68.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088836434.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.598 kcal (2) G-P(sol) polarization free energy of solvation -71.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds