Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.00535 * 2 1 4 4 C 1.54322 * 109.88188 * 238.89715 * 2 1 3 5 5 H 1.09003 * 110.71867 * 336.93617 * 4 2 1 6 6 N 1.46496 * 110.71848 * 100.02750 * 4 2 1 7 7 C 1.34777 * 120.00271 * 202.55776 * 6 4 2 8 8 O 1.21278 * 119.99854 * 0.02562 * 7 6 4 9 9 C 1.50703 * 120.00161 * 180.02562 * 7 6 4 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.38239 * 120.00487 * 100.00192 * 10 9 7 12 12 C 1.38214 * 120.05099 * 180.02562 * 11 10 9 13 13 C 1.38264 * 120.06315 * 0.02562 * 12 11 10 14 14 C 1.38282 * 120.00563 * 359.97438 * 13 12 11 15 15 Cl 1.73600 * 120.02110 * 179.97438 * 14 13 12 16 16 C 1.38396 * 120.00915 * 279.72671 * 10 9 7 17 17 F 1.35107 * 120.02863 * 359.97438 * 16 10 9 18 18 C 1.55156 * 103.10360 * 218.47983 * 4 2 1 19 19 C 1.54906 * 101.58285 * 35.41710 * 18 4 2 20 20 N 1.47327 * 110.06146 * 121.16828 * 2 1 3 21 21 C 1.36929 * 125.61792 * 298.23998 * 20 2 1 22 22 H 1.08011 * 119.99886 * 359.84601 * 21 20 2 23 23 C 1.38817 * 120.00291 * 179.83883 * 21 20 2 24 24 N 1.31616 * 119.99764 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99954 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47491 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47135 * 120.00367 * 25 23 21 28 28 H 1.48499 * 109.47020 * 239.99787 * 25 23 21 29 29 H 1.08997 * 109.47424 * 181.10489 * 1 2 3 30 30 H 1.09007 * 109.46931 * 301.09856 * 1 2 3 31 31 H 1.08995 * 109.47038 * 61.09437 * 1 2 3 32 32 H 0.97005 * 120.00266 * 22.56359 * 6 4 2 33 33 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 34 34 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 35 35 H 1.08008 * 119.97840 * 0.02562 * 11 10 9 36 36 H 1.07997 * 119.97189 * 180.02562 * 12 11 10 37 37 H 1.07992 * 119.99597 * 180.02562 * 13 12 11 38 38 H 1.09001 * 111.00213 * 153.48720 * 18 4 2 39 39 H 1.08998 * 111.00886 * 277.29880 * 18 4 2 40 40 H 1.09002 * 110.36838 * 81.82299 * 19 18 4 41 41 H 1.08997 * 110.37147 * 204.14888 * 19 18 4 42 42 H 0.97000 * 119.99653 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2426 5 1 1.3038 -1.4438 -1.6199 6 7 2.4554 0.1958 -2.2875 7 6 2.5055 -0.2029 -3.5739 8 8 2.2185 -1.3443 -3.8666 9 6 2.9182 0.7696 -4.6487 10 6 2.8915 0.0792 -5.9880 11 6 1.8153 0.2586 -6.8369 12 6 1.7896 -0.3746 -8.0652 13 6 2.8398 -1.1888 -8.4469 14 6 3.9176 -1.3700 -7.5997 15 17 5.2361 -2.3928 -8.0782 16 6 3.9470 -0.7300 -6.3708 17 9 5.0020 -0.9011 -5.5443 18 6 3.2869 -1.5179 -0.6956 19 6 2.8161 -1.8831 0.7342 20 7 2.0354 -0.7162 1.1841 21 6 1.8142 -0.3583 2.4872 22 1 1.2261 0.5188 2.7139 23 6 2.3456 -1.1228 3.5168 24 7 3.0626 -2.1914 3.2405 25 14 2.0432 -0.6349 5.2944 26 1 1.2138 0.5962 5.3356 27 1 1.3331 -1.7346 5.9956 28 1 3.3430 -0.3782 5.9652 29 1 -0.3634 -1.0274 0.0198 30 1 -0.3633 0.5308 0.8800 31 1 -0.3633 0.4967 -0.8996 32 1 2.6848 1.1088 -2.0534 33 1 3.9267 1.1296 -4.4452 34 1 2.2271 1.6124 -4.6609 35 1 0.9939 0.8940 -6.5401 36 1 0.9483 -0.2332 -8.7275 37 1 2.8187 -1.6827 -9.4070 38 1 3.4810 -2.4146 -1.2841 39 1 4.1666 -0.8749 -0.6657 40 1 2.1879 -2.7736 0.7109 41 1 3.6742 -2.0403 1.3877 42 1 3.4343 -2.7254 3.9599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088881192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -38.042461 kcal Electronic energy + Delta-G solvation = -26942.170946 eV Core-core repulsion = 22863.141713 eV Total energy + Delta-G solvation = -4079.029233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.11799 -40.09595 -39.10912 -37.54082 -36.79557 -34.02515 -33.19112 -31.98303 -30.72703 -30.38450 -28.98151 -27.76795 -24.68119 -23.99501 -23.14829 -22.46887 -20.59115 -20.15019 -19.60146 -17.96593 -17.12952 -17.02698 -16.76828 -16.49010 -15.85695 -15.65706 -14.91019 -14.83242 -14.74169 -14.08651 -13.85968 -13.64136 -13.57949 -13.39981 -13.17680 -12.88999 -12.67523 -12.16087 -12.07875 -11.87715 -11.72647 -11.71702 -11.58533 -11.19477 -11.14775 -10.87464 -10.85474 -10.55199 -10.42677 -10.07756 -9.80281 -9.75171 -9.57362 -9.12230 -8.95548 -8.69940 -8.61775 -6.88854 -5.66466 -3.09520 0.66793 0.73680 1.73042 2.73999 3.00594 3.38279 3.42007 3.45960 3.47153 3.82402 4.13567 4.41547 4.46874 4.67864 4.75329 4.85531 4.95940 5.12668 5.27393 5.35717 5.41304 5.53492 5.54290 5.62351 5.64345 5.78552 5.81583 5.94377 6.10470 6.24288 6.29106 6.33509 6.36182 6.53159 6.59111 6.72445 6.84945 7.09518 7.51399 7.61342 7.69417 7.84646 8.32978 8.38199 9.19335 9.80125 10.44127 11.36837 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024401 B = 0.002349 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.232496 B =11915.267552 C =12660.992940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.135 3.865 5 H 0.092 0.908 6 N -0.714 5.714 7 C 0.513 3.487 8 O -0.534 6.534 9 C -0.105 4.105 10 C -0.085 4.085 11 C -0.076 4.076 12 C -0.118 4.118 13 C -0.086 4.086 14 C -0.074 4.074 15 Cl -0.052 7.052 16 C 0.129 3.871 17 F -0.122 7.122 18 C -0.153 4.153 19 C 0.153 3.847 20 N -0.596 5.596 21 C -0.220 4.220 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.014 0.986 41 H 0.109 0.891 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 7.383 -24.475 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.031 3.969 5 H 0.110 0.890 6 N -0.365 5.365 7 C 0.299 3.701 8 O -0.411 6.411 9 C -0.145 4.145 10 C -0.087 4.087 11 C -0.094 4.094 12 C -0.137 4.137 13 C -0.104 4.104 14 C -0.102 4.102 15 Cl -0.023 7.023 16 C 0.109 3.891 17 F -0.100 7.100 18 C -0.192 4.192 19 C 0.028 3.972 20 N -0.321 5.321 21 C -0.348 4.348 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.568 5.568 25 Si 0.745 3.255 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.232 0.768 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.127 0.873 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.438 6.374 -24.446 25.267 hybrid contribution 0.210 0.440 1.176 1.273 sum -0.228 6.815 -23.270 24.249 Atomic orbital electron populations 1.22229 0.97871 1.01445 0.99873 1.21048 0.92538 0.94783 0.86953 0.94604 1.22157 0.97650 0.90774 0.86317 0.89021 1.46043 1.68857 1.15177 1.06414 1.20252 0.77902 0.88692 0.83302 1.90730 1.48455 1.19707 1.82178 1.20646 1.05271 0.98446 0.90116 1.19326 0.93923 0.98973 0.96477 1.21034 0.96536 0.98702 0.93175 1.21119 0.98515 0.97147 0.96879 1.20969 0.91754 0.98352 0.99355 1.20961 0.93765 0.99985 0.95459 1.98389 1.46315 1.66206 1.91407 1.17193 0.86065 0.98191 0.87693 1.91554 1.54081 1.93669 1.70685 1.23389 0.96744 0.99361 0.99746 1.21947 0.97406 0.88310 0.89526 1.44578 1.59295 1.28150 1.00069 1.19065 1.27248 1.08014 0.80498 0.90417 1.24797 1.00410 0.97371 0.98068 1.69808 1.39195 1.17749 1.30097 0.86010 0.77342 0.77517 0.84675 1.20561 1.21770 1.21765 0.92934 0.92715 0.94346 0.76757 0.87392 0.87073 0.84338 0.84291 0.84063 0.92038 0.91994 0.96808 0.87314 0.93728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.15 37.16 0.34 -2.47 16 2 C 0.15 3.05 3.49 -66.79 -0.23 2.81 16 3 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 4 C 0.14 2.44 2.79 -66.10 -0.18 2.26 16 5 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 6 N -0.71 -10.01 5.19 -52.03 -0.27 -10.28 16 7 C 0.51 7.25 7.82 -10.98 -0.09 7.16 16 8 O -0.53 -9.82 15.64 5.56 0.09 -9.74 16 9 C -0.10 -1.00 5.56 -29.03 -0.16 -1.17 16 10 C -0.09 -0.91 4.42 -104.56 -0.46 -1.37 16 11 C -0.08 -0.63 9.67 -39.59 -0.38 -1.01 16 12 C -0.12 -0.86 10.04 -39.58 -0.40 -1.26 16 13 C -0.09 -0.72 9.83 -39.56 -0.39 -1.11 16 14 C -0.07 -0.82 6.33 -39.44 -0.25 -1.07 16 15 Cl -0.05 -0.57 28.62 -51.86 -1.48 -2.05 16 16 C 0.13 1.60 7.11 -39.39 -0.28 1.32 16 17 F -0.12 -1.72 16.23 2.25 0.04 -1.68 16 18 C -0.15 -3.08 6.77 -24.58 -0.17 -3.24 16 19 C 0.15 3.75 5.89 -2.53 -0.01 3.74 16 20 N -0.60 -14.74 3.14 -162.34 -0.51 -15.25 16 21 C -0.22 -5.94 9.91 -15.06 -0.15 -6.09 16 22 H 0.08 2.03 7.83 -52.48 -0.41 1.61 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 25 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.40 4.45 8.34 -40.82 -0.34 4.11 16 33 H 0.11 0.91 7.94 -51.93 -0.41 0.49 16 34 H 0.11 0.68 8.00 -51.93 -0.42 0.27 16 35 H 0.14 0.80 8.04 -52.48 -0.42 0.38 16 36 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -32.88 368.29 -9.57 -42.45 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.60 Total: 2.20 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.91 Total: -1.90 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.22 Total: -51.62 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.48 Total: -2.05 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.88 -9.57 -42.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088881192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.407 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds