Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.09006 * 110.71959 * 336.67661 * 4 2 1 6 6 N 1.46498 * 110.72056 * 99.77624 * 4 2 1 7 7 C 1.34773 * 119.99897 * 205.00000 * 6 4 2 8 8 O 1.21286 * 119.99827 * 359.97438 * 7 6 4 9 9 C 1.50697 * 120.00211 * 180.02562 * 7 6 4 10 10 C 1.50694 * 109.47496 * 180.02562 * 9 7 6 11 11 C 1.38460 * 120.01528 * 269.72251 * 10 9 7 12 12 F 1.35100 * 120.02051 * 359.97316 * 11 10 9 13 13 C 1.38456 * 119.96062 * 179.69702 * 11 10 9 14 14 C 1.38227 * 119.99559 * 0.57820 * 13 11 10 15 15 C 1.38202 * 120.04201 * 359.71998 * 14 13 11 16 16 C 1.38294 * 120.02585 * 89.99412 * 10 9 7 17 17 Cl 1.73604 * 119.99615 * 359.97438 * 16 10 9 18 18 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 19 19 C 1.54905 * 101.53029 * 35.35966 * 18 4 2 20 20 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 21 21 C 1.36943 * 125.64628 * 298.52844 * 20 2 1 22 22 H 1.07999 * 119.99997 * 0.02562 * 21 20 2 23 23 C 1.38816 * 119.99832 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00113 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47746 * 60.00204 * 25 23 21 27 27 H 1.48506 * 109.47230 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47299 * 299.99977 * 25 23 21 29 29 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 30 30 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 31 31 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 32 32 H 0.96997 * 120.00355 * 25.00009 * 6 4 2 33 33 H 1.09011 * 109.46606 * 299.99832 * 9 7 6 34 34 H 1.08995 * 109.47398 * 59.99178 * 9 7 6 35 35 H 1.08000 * 119.99995 * 180.29615 * 13 11 10 36 36 H 1.08004 * 119.97535 * 179.69964 * 14 13 11 37 37 H 1.08001 * 119.98209 * 180.02562 * 15 14 13 38 38 H 1.09001 * 110.95548 * 277.33125 * 18 4 2 39 39 H 1.08996 * 111.09853 * 153.45188 * 18 4 2 40 40 H 1.09002 * 110.36692 * 204.23391 * 19 18 4 41 41 H 1.08995 * 110.36664 * 82.02192 * 19 18 4 42 42 H 0.97000 * 120.00077 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3103 -1.4473 -1.6178 6 7 2.4541 0.1969 -2.2880 7 6 2.4583 -0.1895 -3.5791 8 8 2.1348 -1.3204 -3.8747 9 6 2.8662 0.7832 -4.6554 10 6 2.7847 0.1079 -6.0001 11 6 3.8885 -0.5539 -6.5108 12 9 5.0393 -0.5940 -5.8042 13 6 3.8105 -1.1794 -7.7436 14 6 2.6348 -1.1327 -8.4690 15 6 1.5349 -0.4669 -7.9619 16 6 1.6093 0.1534 -6.7272 17 17 0.2267 0.9883 -6.0907 18 6 3.2918 -1.5137 -0.6899 19 6 2.8176 -1.8763 0.7395 20 7 2.0300 -0.7124 1.1849 21 6 1.8015 -0.3544 2.4868 22 1 1.2078 0.5197 2.7103 23 6 2.3331 -1.1149 3.5193 24 7 3.0570 -2.1799 3.2470 25 14 2.0209 -0.6269 5.2951 26 1 0.5599 -0.6329 5.5608 27 1 2.6928 -1.5942 6.1998 28 1 2.5624 0.7345 5.5369 29 1 -0.3634 0.5206 0.8861 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 2.7132 1.1012 -2.0515 33 1 2.1969 1.6435 -4.6402 34 1 3.8888 1.1153 -4.4765 35 1 4.6696 -1.6998 -8.1404 36 1 2.5758 -1.6166 -9.4327 37 1 0.6167 -0.4314 -8.5294 38 1 4.1690 -0.8674 -0.6584 39 1 3.4909 -2.4114 -1.2751 40 1 3.6742 -2.0285 1.3961 41 1 2.1942 -2.7700 0.7170 42 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089001250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -57.049338 kcal Electronic energy + Delta-G solvation = -27136.630766 eV Core-core repulsion = 23056.777333 eV Total energy + Delta-G solvation = -4079.853433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.02065 -41.21884 -40.09570 -39.04924 -37.49293 -35.59912 -34.20948 -33.67086 -32.07586 -31.42542 -30.62448 -28.81690 -26.33065 -25.79509 -23.89922 -23.33641 -22.13721 -21.59051 -21.15185 -18.80869 -18.73424 -18.20016 -17.91948 -17.47955 -16.90365 -16.62998 -16.45580 -16.02247 -15.79101 -15.72130 -15.42600 -14.88378 -14.62988 -14.48811 -14.32028 -14.04089 -13.96863 -13.79108 -13.34779 -13.24932 -12.95686 -12.72530 -12.67987 -12.60684 -12.44980 -12.37005 -12.25670 -12.11184 -12.02814 -11.89417 -11.58297 -11.45243 -11.01587 -10.72528 -10.02571 -9.86433 -9.72097 -8.90570 -7.74750 -5.20107 -0.03570 0.01599 1.00238 1.48035 1.50995 1.57151 1.60604 2.07259 2.47210 2.55026 3.21339 3.35465 3.37370 3.56136 3.69168 3.85471 3.89411 3.91372 3.94628 4.20491 4.22478 4.34631 4.40286 4.48525 4.53455 4.61370 4.66923 4.78939 4.85979 4.93774 5.03508 5.03690 5.09374 5.12032 5.21709 5.34686 5.49212 5.58745 5.61484 5.71547 5.79274 6.30033 6.54641 7.10790 7.23501 7.78632 8.42436 9.27056 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022667 B = 0.002609 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.967812 B =10729.167210 C =11537.845668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 H 0.053 0.947 4 C 0.154 3.846 5 H 0.077 0.923 6 N -0.704 5.704 7 C 0.519 3.481 8 O -0.573 6.573 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.098 3.902 12 F -0.142 7.142 13 C -0.150 4.150 14 C -0.070 4.070 15 C -0.121 4.121 16 C -0.013 4.013 17 Cl -0.058 7.058 18 C -0.139 4.139 19 C 0.159 3.841 20 N -0.614 5.614 21 C -0.228 4.228 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.952 5.952 25 Si 0.979 3.021 26 H -0.280 1.280 27 H -0.297 1.297 28 H -0.275 1.275 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.415 0.585 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.078 0.922 41 H -0.017 1.017 42 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 8.342 -26.823 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.044 3.956 3 H 0.071 0.929 4 C 0.048 3.952 5 H 0.095 0.905 6 N -0.356 5.356 7 C 0.306 3.694 8 O -0.452 6.452 9 C -0.143 4.143 10 C -0.112 4.112 11 C 0.079 3.921 12 F -0.121 7.121 13 C -0.169 4.169 14 C -0.088 4.088 15 C -0.140 4.140 16 C -0.040 4.040 17 Cl -0.029 7.029 18 C -0.178 4.178 19 C 0.033 3.967 20 N -0.339 5.339 21 C -0.357 4.357 22 H 0.103 0.897 23 C -0.261 4.261 24 N -0.602 5.602 25 Si 0.808 3.192 26 H -0.206 1.206 27 H -0.224 1.224 28 H -0.200 1.200 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.252 0.748 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.180 0.820 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.001 0.999 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.846 7.571 -26.724 27.788 hybrid contribution 0.096 0.165 1.804 1.814 sum -0.751 7.736 -24.920 26.104 Atomic orbital electron populations 1.22116 0.96621 1.00607 1.01162 1.21196 0.93454 0.95142 0.85770 0.92891 1.21698 0.96095 0.90859 0.86555 0.90461 1.45816 1.68263 1.16223 1.05305 1.20785 0.76575 0.88470 0.83544 1.90699 1.49340 1.22314 1.82844 1.20677 1.06736 0.98312 0.88546 1.19224 0.92862 1.02298 0.96788 1.17643 0.81823 1.00465 0.92201 1.91491 1.47265 1.94750 1.78552 1.21594 1.01664 1.00665 0.92974 1.21407 0.90174 0.96310 1.00895 1.21470 1.01448 0.97346 0.93720 1.20730 0.87911 0.99629 0.95716 1.98382 1.41128 1.76427 1.86945 1.23211 0.97789 0.99866 0.96962 1.21646 0.95666 0.87775 0.91616 1.44719 1.59550 1.28732 1.00884 1.19365 1.26329 1.08264 0.81722 0.89652 1.25625 1.00791 0.97726 1.01997 1.70039 1.40162 1.19161 1.30799 0.85136 0.77503 0.77153 0.79439 1.20611 1.22354 1.20048 0.93304 0.91190 0.94746 0.74831 0.85070 0.85564 0.81990 0.80245 0.81982 0.91103 0.91919 0.90445 0.99904 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.15 71.98 0.66 -4.66 16 2 C 0.15 5.96 3.48 45.34 0.16 6.11 16 3 H 0.05 1.94 7.72 -2.39 -0.02 1.92 16 4 C 0.15 5.59 2.84 46.22 0.13 5.72 16 5 H 0.08 3.11 7.26 -2.38 -0.02 3.09 16 6 N -0.70 -19.67 5.19 -436.71 -2.26 -21.94 16 7 C 0.52 14.91 7.82 87.66 0.69 15.59 16 8 O -0.57 -21.33 15.68 -3.05 -0.05 -21.37 16 9 C -0.10 -2.13 5.26 29.10 0.15 -1.98 16 10 C -0.11 -2.40 4.38 -19.80 -0.09 -2.49 16 11 C 0.10 2.12 7.24 22.37 0.16 2.28 16 12 F -0.14 -3.46 16.47 44.97 0.74 -2.72 16 13 C -0.15 -2.31 10.03 22.32 0.22 -2.08 16 14 C -0.07 -0.80 10.04 22.26 0.22 -0.58 16 15 C -0.12 -1.73 9.83 22.29 0.22 -1.51 16 16 C -0.01 -0.25 6.31 22.32 0.14 -0.11 16 17 Cl -0.06 -1.12 27.30 -2.72 -0.07 -1.20 16 18 C -0.14 -5.65 6.79 32.03 0.22 -5.43 16 19 C 0.16 8.09 5.88 86.85 0.51 8.61 16 20 N -0.61 -31.02 3.13 -668.28 -2.09 -33.11 16 21 C -0.23 -12.47 9.87 84.03 0.83 -11.64 16 22 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 23 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 24 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 25 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 H 0.05 1.82 8.02 -2.38 -0.02 1.80 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.41 8.96 8.37 -92.71 -0.78 8.18 16 33 H 0.13 2.13 6.90 -2.38 -0.02 2.12 16 34 H 0.13 2.15 7.63 -2.39 -0.02 2.13 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.18 0.65 8.06 -2.91 -0.02 0.62 16 37 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.08 4.46 5.87 -2.39 -0.01 4.45 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -72.30 365.93 3.48 -68.82 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.28 Total: 16.50 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 4.69 Total: 4.41 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.14 Total: -111.96 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.37 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.74 Total: -2.72 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.20 kcal Total: -72.30 3.48 -68.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089001250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.766 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds