Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.64002 * 2 1 4 4 C 1.54328 * 110.72234 * 236.66248 * 2 1 3 5 5 N 1.47024 * 107.27198 * 219.44416 * 4 2 1 6 6 C 1.36934 * 125.64850 * 178.92137 * 5 4 2 7 7 H 1.07992 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00015 * 0.02562 * 6 5 4 9 9 N 1.31624 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00022 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46669 * 60.00328 * 10 8 6 12 12 H 1.48502 * 109.46878 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47456 * 300.00381 * 10 8 6 14 14 C 1.47424 * 108.70153 * 358.94119 * 5 4 2 15 15 C 1.54914 * 104.83448 * 24.12812 * 14 5 4 16 16 H 1.09000 * 111.03556 * 81.07643 * 15 14 5 17 17 C 1.52999 * 111.00343 * 204.91650 * 15 14 5 18 18 N 1.46502 * 109.47074 * 287.19509 * 17 15 14 19 19 C 1.34781 * 120.00052 * 180.02562 * 18 17 15 20 20 O 1.21563 * 119.99669 * 359.97438 * 19 18 17 21 21 C 1.47694 * 119.99688 * 180.02562 * 19 18 17 22 22 C 1.39652 * 120.16556 * 359.97438 * 21 19 18 23 23 C 1.37964 * 119.86422 * 179.97438 * 22 21 19 24 24 Cl 1.73607 * 119.90143 * 180.29854 * 23 22 21 25 25 C 1.38565 * 120.19268 * 0.02865 * 23 22 21 26 26 C 1.38188 * 120.32523 * 359.97288 * 25 23 22 27 27 C 1.38314 * 120.13236 * 0.02562 * 26 25 23 28 28 F 1.35104 * 120.09270 * 180.02562 * 27 26 25 29 29 H 1.08993 * 109.47354 * 296.85669 * 1 2 3 30 30 H 1.09004 * 109.47287 * 56.85912 * 1 2 3 31 31 H 1.09009 * 109.46947 * 176.85641 * 1 2 3 32 32 H 1.08998 * 109.88176 * 338.86563 * 4 2 1 33 33 H 1.09000 * 109.87795 * 99.87183 * 4 2 1 34 34 H 0.96994 * 119.99977 * 179.97438 * 9 8 6 35 35 H 1.09006 * 110.37045 * 265.28738 * 14 5 4 36 36 H 1.09001 * 110.36540 * 142.96964 * 14 5 4 37 37 H 1.08999 * 109.46739 * 167.19927 * 17 15 14 38 38 H 1.08992 * 109.47474 * 47.19641 * 17 15 14 39 39 H 0.97003 * 120.00474 * 359.97438 * 18 17 15 40 40 H 1.08005 * 120.06204 * 0.05588 * 22 21 19 41 41 H 1.08005 * 119.83311 * 179.97438 * 25 23 22 42 42 H 1.08004 * 119.92996 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2059 5 7 3.2446 -1.5520 -0.7363 6 6 4.0037 -2.4003 -1.4973 7 1 4.8457 -2.9135 -1.0569 8 6 3.6910 -2.6006 -2.8349 9 7 2.6652 -1.9746 -3.3718 10 14 4.7271 -3.7572 -3.8732 11 1 4.6846 -5.1209 -3.2868 12 1 4.1887 -3.7968 -5.2567 13 1 6.1309 -3.2740 -3.9014 14 6 3.4632 -1.2486 0.6897 15 6 2.0789 -0.7934 1.2152 16 1 1.4447 -1.6507 1.4407 17 6 2.2277 0.1122 2.4394 18 7 2.6327 -0.6918 3.5952 19 6 2.8249 -0.1026 4.7920 20 8 2.6625 1.0962 4.9123 21 6 3.2337 -0.9131 5.9570 22 6 3.4217 -2.2904 5.8224 23 6 3.8042 -3.0415 6.9147 24 17 4.0457 -4.7524 6.7467 25 6 4.0016 -2.4333 8.1440 26 6 3.8178 -1.0711 8.2860 27 6 3.4344 -0.3052 7.2000 28 9 3.2555 1.0267 7.3397 29 1 -0.3634 0.4642 0.9167 30 1 -0.3634 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0564 32 1 1.3130 -1.4785 -1.5751 33 1 2.3716 -0.1059 -1.9986 34 1 2.4469 -2.1142 -4.3065 35 1 4.1932 -0.4465 0.7993 36 1 3.7960 -2.1405 1.2206 37 1 1.2747 0.5973 2.6504 38 1 2.9852 0.8702 2.2407 39 1 2.7619 -1.6484 3.4993 40 1 3.2692 -2.7662 4.8650 41 1 4.3006 -3.0269 8.9953 42 1 3.9738 -0.6036 9.2471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092798358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -41.576405 kcal Electronic energy + Delta-G solvation = -26670.329877 eV Core-core repulsion = 22591.147400 eV Total energy + Delta-G solvation = -4079.182476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.19823 -40.36475 -38.91676 -37.95737 -36.81516 -34.82007 -33.07752 -32.05214 -30.75063 -30.72236 -29.22363 -26.09254 -25.38706 -24.40180 -23.28123 -22.52173 -20.94554 -20.07725 -19.38761 -18.51899 -17.52790 -17.11403 -16.78672 -16.13708 -16.00429 -15.71302 -15.21965 -14.98891 -14.75029 -14.25065 -13.87154 -13.81313 -13.69087 -13.63624 -13.20463 -13.01715 -12.92112 -12.54736 -12.07153 -11.88283 -11.72218 -11.63791 -11.48885 -11.40755 -11.23568 -10.82287 -10.79374 -10.29761 -10.10844 -10.03621 -9.93470 -9.79498 -9.74302 -9.57928 -9.14023 -8.99280 -8.61321 -6.84825 -5.72492 -3.06209 0.14306 0.46690 1.59440 2.40793 2.95399 3.22683 3.39318 3.43730 3.44947 3.67095 4.04241 4.15693 4.47719 4.50532 4.61112 4.93478 5.00610 5.14523 5.16780 5.28719 5.38756 5.41541 5.50808 5.52052 5.54557 5.72581 5.83644 5.99297 6.05476 6.08182 6.15992 6.24991 6.33204 6.46506 6.53940 6.60484 6.72937 6.91257 7.35821 7.55043 7.62619 7.82441 8.04014 8.24673 9.20704 9.80983 10.47009 11.38996 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.002795 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.321036 B =10015.933306 C =11758.257641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.132 3.868 18 N -0.715 5.715 19 C 0.555 3.445 20 O -0.524 6.524 21 C -0.157 4.157 22 C -0.048 4.048 23 C -0.057 4.057 24 Cl -0.053 7.053 25 C -0.057 4.057 26 C -0.152 4.152 27 C 0.164 3.836 28 F -0.109 7.109 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.019 0.981 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 -1.010 23.736 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.099 0.901 17 C 0.009 3.991 18 N -0.367 5.367 19 C 0.341 3.659 20 O -0.401 6.401 21 C -0.161 4.161 22 C -0.068 4.068 23 C -0.084 4.084 24 Cl -0.024 7.024 25 C -0.076 4.076 26 C -0.171 4.171 27 C 0.143 3.857 28 F -0.086 7.086 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.236 0.764 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.808 -0.311 23.519 23.535 hybrid contribution 0.633 -1.066 -0.684 1.416 sum -0.174 -1.377 22.835 22.878 Atomic orbital electron populations 1.21699 0.95275 1.01639 1.00595 1.22441 0.95186 0.99138 0.96217 0.91362 1.21219 0.89088 0.93076 0.90707 1.44444 1.32618 1.51431 1.04692 1.19002 1.07695 1.17763 0.91399 0.90546 1.24799 0.98399 1.00287 0.96888 1.69949 1.28749 1.45458 1.12718 0.86206 0.79510 0.80511 0.79566 1.21179 1.21597 1.21179 1.21592 0.92953 0.97025 0.86931 1.22698 0.99524 0.98090 0.93071 0.90067 1.21480 1.00419 0.93773 0.83387 1.45981 1.69315 1.12312 1.09076 1.17829 0.78237 0.87206 0.82643 1.90853 1.50792 1.14033 1.84440 1.20095 1.07775 0.94009 0.94246 1.21171 0.95177 0.91529 0.98901 1.20806 1.05829 0.86488 0.95250 1.98413 1.95281 1.10710 1.97957 1.21102 0.96155 0.93926 0.96451 1.21129 1.03356 0.93647 0.98993 1.17755 0.96591 0.78451 0.92875 1.91631 1.91619 1.29328 1.96064 0.93654 0.92728 0.92698 0.93285 0.94024 0.93692 0.96289 0.94665 0.91262 0.91002 0.76374 0.83340 0.83363 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.16 37.16 0.34 -1.70 16 2 C -0.11 -1.95 3.02 -88.78 -0.27 -2.21 16 3 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.33 4.97 -3.06 -0.02 4.31 16 5 N -0.61 -15.06 3.39 -170.07 -0.58 -15.64 16 6 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 10 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.14 2.76 6.65 -2.53 -0.02 2.74 16 15 C -0.11 -1.82 2.50 -88.47 -0.22 -2.04 16 16 H 0.08 1.27 8.05 -51.93 -0.42 0.85 16 17 C 0.13 1.86 5.13 -4.04 -0.02 1.84 16 18 N -0.72 -8.89 5.45 -61.30 -0.33 -9.22 16 19 C 0.56 7.60 7.77 -12.40 -0.10 7.50 16 20 O -0.52 -9.08 15.34 5.31 0.08 -8.99 16 21 C -0.16 -1.72 5.88 -104.92 -0.62 -2.33 16 22 C -0.05 -0.42 9.31 -39.15 -0.36 -0.79 16 23 C -0.06 -0.44 6.31 -39.56 -0.25 -0.69 16 24 Cl -0.05 -0.41 28.95 -51.86 -1.50 -1.91 16 25 C -0.06 -0.36 9.82 -39.48 -0.39 -0.75 16 26 C -0.15 -1.08 10.01 -39.57 -0.40 -1.47 16 27 C 0.16 1.72 7.28 -38.96 -0.28 1.44 16 28 F -0.11 -1.40 15.55 2.25 0.04 -1.36 16 29 H 0.04 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.86 8.06 -51.92 -0.42 0.44 16 32 H 0.05 1.28 7.01 -51.93 -0.36 0.91 16 33 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.39 7.91 -51.93 -0.41 -0.02 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 38 H 0.07 1.09 7.96 -51.93 -0.41 0.68 16 39 H 0.40 4.15 6.51 -40.82 -0.27 3.88 16 40 H 0.15 1.10 6.41 -52.48 -0.34 0.76 16 41 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 42 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -32.49 365.61 -9.60 -42.09 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.51 Total: -0.20 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -2.85 Total: -0.94 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.34 Total: -51.06 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.08 Total: -8.99 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.49 -9.60 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092798358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.512 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds