Wall clock time and date at job start Sat Apr 11 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.64002 * 2 1 4 4 C 1.54328 * 110.72234 * 236.66248 * 2 1 3 5 5 N 1.47024 * 107.27198 * 219.44416 * 4 2 1 6 6 C 1.36934 * 125.64850 * 178.92137 * 5 4 2 7 7 H 1.07992 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.38815 * 120.00015 * 0.02562 * 6 5 4 9 9 N 1.31624 * 119.99841 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00022 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46669 * 60.00328 * 10 8 6 12 12 H 1.48502 * 109.46878 * 179.97438 * 10 8 6 13 13 H 1.48490 * 109.47456 * 300.00381 * 10 8 6 14 14 C 1.47424 * 108.70153 * 358.94119 * 5 4 2 15 15 C 1.54914 * 104.83448 * 24.12812 * 14 5 4 16 16 H 1.09000 * 111.03556 * 81.07643 * 15 14 5 17 17 C 1.52999 * 111.00343 * 204.91650 * 15 14 5 18 18 N 1.46502 * 109.47074 * 287.19509 * 17 15 14 19 19 C 1.34781 * 120.00052 * 180.02562 * 18 17 15 20 20 O 1.21563 * 119.99669 * 359.97438 * 19 18 17 21 21 C 1.47694 * 119.99688 * 180.02562 * 19 18 17 22 22 C 1.39652 * 120.16556 * 359.97438 * 21 19 18 23 23 C 1.37964 * 119.86422 * 179.97438 * 22 21 19 24 24 Cl 1.73607 * 119.90143 * 180.29854 * 23 22 21 25 25 C 1.38565 * 120.19268 * 0.02865 * 23 22 21 26 26 C 1.38188 * 120.32523 * 359.97288 * 25 23 22 27 27 C 1.38314 * 120.13236 * 0.02562 * 26 25 23 28 28 F 1.35104 * 120.09270 * 180.02562 * 27 26 25 29 29 H 1.08993 * 109.47354 * 296.85669 * 1 2 3 30 30 H 1.09004 * 109.47287 * 56.85912 * 1 2 3 31 31 H 1.09009 * 109.46947 * 176.85641 * 1 2 3 32 32 H 1.08998 * 109.88176 * 338.86563 * 4 2 1 33 33 H 1.09000 * 109.87795 * 99.87183 * 4 2 1 34 34 H 0.96994 * 119.99977 * 179.97438 * 9 8 6 35 35 H 1.09006 * 110.37045 * 265.28738 * 14 5 4 36 36 H 1.09001 * 110.36540 * 142.96964 * 14 5 4 37 37 H 1.08999 * 109.46739 * 167.19927 * 17 15 14 38 38 H 1.08992 * 109.47474 * 47.19641 * 17 15 14 39 39 H 0.97003 * 120.00474 * 359.97438 * 18 17 15 40 40 H 1.08005 * 120.06204 * 0.05588 * 22 21 19 41 41 H 1.08005 * 119.83311 * 179.97438 * 25 23 22 42 42 H 1.08004 * 119.92996 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7933 -1.2059 5 7 3.2446 -1.5520 -0.7363 6 6 4.0037 -2.4003 -1.4973 7 1 4.8457 -2.9135 -1.0569 8 6 3.6910 -2.6006 -2.8349 9 7 2.6652 -1.9746 -3.3718 10 14 4.7271 -3.7572 -3.8732 11 1 4.6846 -5.1209 -3.2868 12 1 4.1887 -3.7968 -5.2567 13 1 6.1309 -3.2740 -3.9014 14 6 3.4632 -1.2486 0.6897 15 6 2.0789 -0.7934 1.2152 16 1 1.4447 -1.6507 1.4407 17 6 2.2277 0.1122 2.4394 18 7 2.6327 -0.6918 3.5952 19 6 2.8249 -0.1026 4.7920 20 8 2.6625 1.0962 4.9123 21 6 3.2337 -0.9131 5.9570 22 6 3.4217 -2.2904 5.8224 23 6 3.8042 -3.0415 6.9147 24 17 4.0457 -4.7524 6.7467 25 6 4.0016 -2.4333 8.1440 26 6 3.8178 -1.0711 8.2860 27 6 3.4344 -0.3052 7.2000 28 9 3.2555 1.0267 7.3397 29 1 -0.3634 0.4642 0.9167 30 1 -0.3634 0.5618 -0.8605 31 1 -0.3633 -1.0262 -0.0564 32 1 1.3130 -1.4785 -1.5751 33 1 2.3716 -0.1059 -1.9986 34 1 2.4469 -2.1142 -4.3065 35 1 4.1932 -0.4465 0.7993 36 1 3.7960 -2.1405 1.2206 37 1 1.2747 0.5973 2.6504 38 1 2.9852 0.8702 2.2407 39 1 2.7619 -1.6484 3.4993 40 1 3.2692 -2.7662 4.8650 41 1 4.3006 -3.0269 8.9953 42 1 3.9738 -0.6036 9.2471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092798358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:35 Heat of formation + Delta-G solvation = -60.972447 kcal Electronic energy + Delta-G solvation = -26671.170952 eV Core-core repulsion = 22591.147400 eV Total energy + Delta-G solvation = -4080.023552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.03023 -41.30634 -39.92222 -39.31225 -37.43831 -36.15806 -34.75868 -32.88192 -32.53710 -31.38469 -30.60833 -27.86562 -26.80536 -25.40965 -24.42381 -23.58080 -22.01953 -21.63943 -20.81497 -19.45462 -18.79499 -18.26105 -17.92892 -17.13396 -16.93990 -16.78109 -16.47241 -16.23968 -15.83024 -15.61243 -15.52967 -14.76179 -14.65616 -14.53914 -14.37549 -14.28184 -14.13201 -13.67304 -13.43617 -13.29636 -13.11363 -12.86080 -12.72220 -12.64495 -12.43347 -12.32500 -12.10743 -11.97189 -11.83203 -11.58543 -11.44758 -11.37985 -11.03255 -10.68619 -10.48233 -10.14778 -9.73318 -8.88506 -7.83616 -5.19199 -0.56249 -0.16075 0.98282 1.46243 1.49268 1.55477 1.58695 1.96405 2.41950 2.50211 2.98969 3.34019 3.34993 3.48811 3.61030 3.75775 3.88184 3.92008 3.94898 3.98800 4.29684 4.35494 4.48417 4.54960 4.59367 4.70792 4.74778 4.80426 4.84380 4.85498 4.94200 4.96937 5.08436 5.13719 5.28989 5.36217 5.44614 5.46079 5.48227 5.72406 5.82687 6.21297 6.36205 7.02824 7.11614 7.79356 8.43849 9.26363 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.002795 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.321036 B =10015.933306 C =11758.257641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.074 0.926 4 C 0.192 3.808 5 N -0.628 5.628 6 C -0.243 4.243 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.274 1.274 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.136 3.864 15 C -0.091 4.091 16 H 0.092 0.908 17 C 0.144 3.856 18 N -0.707 5.707 19 C 0.555 3.445 20 O -0.567 6.567 21 C -0.175 4.175 22 C -0.047 4.047 23 C -0.060 4.060 24 Cl -0.050 7.050 25 C -0.041 4.041 26 C -0.138 4.138 27 C 0.140 3.860 28 F -0.130 7.130 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.017 0.983 33 H -0.001 1.001 34 H 0.246 0.754 35 H 0.017 0.983 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.412 0.588 40 H 0.159 0.841 41 H 0.182 0.818 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -2.430 26.475 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.092 0.908 4 C 0.067 3.933 5 N -0.354 5.354 6 C -0.372 4.372 7 H 0.101 0.899 8 C -0.259 4.259 9 N -0.600 5.600 10 Si 0.805 3.195 11 H -0.200 1.200 12 H -0.222 1.222 13 H -0.205 1.205 14 C 0.011 3.989 15 C -0.110 4.110 16 H 0.111 0.889 17 C 0.020 3.980 18 N -0.359 5.359 19 C 0.342 3.658 20 O -0.448 6.448 21 C -0.179 4.179 22 C -0.066 4.066 23 C -0.087 4.087 24 Cl -0.021 7.021 25 C -0.060 4.060 26 C -0.157 4.157 27 C 0.119 3.881 28 F -0.108 7.108 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.017 0.983 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.176 0.824 41 H 0.199 0.801 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.354 -1.762 26.293 26.354 hybrid contribution 0.560 -0.675 -1.466 1.708 sum 0.206 -2.436 24.827 24.947 Atomic orbital electron populations 1.21645 0.92955 1.01726 1.02183 1.22314 0.97012 0.98563 0.94203 0.90782 1.20974 0.88135 0.91944 0.92234 1.44771 1.32664 1.51130 1.06876 1.19434 1.07990 1.17769 0.92041 0.89888 1.25644 0.99813 1.02245 0.98225 1.70184 1.30389 1.46999 1.12407 0.85174 0.77971 0.78911 0.77414 1.20012 1.22231 1.20521 1.21778 0.95006 0.97554 0.84518 1.22486 0.97173 0.98374 0.93014 0.88937 1.21230 1.00654 0.93092 0.82973 1.45848 1.68878 1.12754 1.08430 1.18225 0.77280 0.86911 0.83340 1.90825 1.52858 1.15932 1.85154 1.19893 1.09938 0.94611 0.93463 1.21223 0.94911 0.90632 0.99851 1.20934 1.05565 0.86570 0.95583 1.98422 1.95230 1.10467 1.97988 1.21497 0.93948 0.93704 0.96811 1.21424 1.01593 0.93648 0.99033 1.18169 0.98019 0.77958 0.93913 1.91576 1.92053 1.30950 1.96195 0.90600 0.92772 0.93193 0.96462 0.98323 0.94484 0.96565 0.93188 0.90318 0.92096 0.75042 0.82400 0.80070 0.80117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 9.16 71.98 0.66 -3.06 16 2 C -0.10 -3.54 3.02 -9.60 -0.03 -3.57 16 3 H 0.07 2.52 8.04 -2.39 -0.02 2.50 16 4 C 0.19 9.37 4.97 86.73 0.43 9.80 16 5 N -0.63 -31.75 3.39 -691.97 -2.35 -34.10 16 6 C -0.24 -13.52 10.28 84.03 0.86 -12.66 16 7 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 8 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 9 N -0.95 -57.28 10.31 21.65 0.22 -57.06 16 10 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.14 5.24 6.65 86.86 0.58 5.82 16 15 C -0.09 -2.79 2.50 -9.40 -0.02 -2.81 16 16 H 0.09 2.69 8.05 -2.39 -0.02 2.67 16 17 C 0.14 3.84 5.13 86.38 0.44 4.28 16 18 N -0.71 -16.60 5.45 -466.13 -2.54 -19.14 16 19 C 0.55 14.86 7.77 86.74 0.67 15.53 16 20 O -0.57 -19.76 15.34 -3.91 -0.06 -19.82 16 21 C -0.17 -3.63 5.88 -20.06 -0.12 -3.75 16 22 C -0.05 -0.72 9.31 22.55 0.21 -0.51 16 23 C -0.06 -0.76 6.31 22.28 0.14 -0.62 16 24 Cl -0.05 -0.65 28.95 -2.72 -0.08 -0.72 16 25 C -0.04 -0.36 9.82 22.34 0.22 -0.15 16 26 C -0.14 -1.55 10.01 22.28 0.22 -1.32 16 27 C 0.14 2.77 7.28 22.67 0.17 2.93 16 28 F -0.13 -3.33 15.55 44.97 0.70 -2.64 16 29 H 0.08 1.77 8.10 -2.39 -0.02 1.76 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.50 8.06 -2.38 -0.02 1.49 16 32 H 0.02 0.94 7.01 -2.39 -0.02 0.92 16 33 H 0.00 -0.08 7.50 -2.39 -0.02 -0.10 16 34 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.02 0.65 7.91 -2.38 -0.02 0.63 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 38 H 0.06 1.80 7.96 -2.39 -0.02 1.78 16 39 H 0.41 7.73 6.51 -92.71 -0.60 7.13 16 40 H 0.16 2.00 6.41 -2.91 -0.02 1.99 16 41 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 42 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -73.73 365.61 3.27 -70.46 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.45 Total: 8.80 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 4.90 Total: 6.63 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.67 Total: -110.30 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.70 Total: -2.64 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.72 kcal Total: -73.73 3.27 -70.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092798358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.483 kcal (2) G-P(sol) polarization free energy of solvation -73.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds