Wall clock time and date at job start Sat Apr 11 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.88432 * 2 1 4 4 C 1.54904 * 111.00392 * 236.07517 * 2 1 3 5 5 N 1.47428 * 104.83364 * 204.91537 * 4 2 1 6 6 C 1.36938 * 125.65113 * 204.17858 * 5 4 2 7 7 H 1.07992 * 120.00364 * 161.46652 * 6 5 4 8 8 C 1.38817 * 119.99454 * 341.46206 * 6 5 4 9 9 N 1.31618 * 119.99422 * 157.64618 * 8 6 5 10 10 Si 1.86797 * 120.00283 * 337.64192 * 8 6 5 11 11 H 1.48505 * 109.46972 * 84.54118 * 10 8 6 12 12 H 1.48500 * 109.46976 * 204.53562 * 10 8 6 13 13 H 1.48499 * 109.47333 * 324.53719 * 10 8 6 14 14 C 1.47017 * 108.69896 * 24.12890 * 5 4 2 15 15 C 1.54324 * 107.27525 * 358.94402 * 14 5 4 16 16 H 1.08995 * 110.72045 * 96.17006 * 15 14 5 17 17 C 1.52998 * 110.71832 * 219.44392 * 15 14 5 18 18 N 1.46502 * 109.47471 * 288.51656 * 17 15 14 19 19 C 1.34773 * 120.00402 * 180.02562 * 18 17 15 20 20 O 1.21574 * 120.00225 * 0.02562 * 19 18 17 21 21 C 1.47634 * 119.99703 * 180.02562 * 19 18 17 22 22 C 1.39697 * 120.15463 * 359.72090 * 21 19 18 23 23 C 1.37794 * 119.88844 * 179.76668 * 22 21 19 24 24 C 1.38614 * 120.20661 * 0.51291 * 23 22 21 25 25 Cl 1.73597 * 119.84626 * 179.76307 * 24 23 22 26 26 C 1.38355 * 120.31148 * 359.74350 * 24 23 22 27 27 C 1.38259 * 120.10143 * 359.97438 * 26 24 23 28 28 F 1.35106 * 120.09965 * 180.02562 * 27 26 24 29 29 H 1.09003 * 109.47220 * 296.12262 * 1 2 3 30 30 H 1.09002 * 109.47200 * 56.11588 * 1 2 3 31 31 H 1.09001 * 109.47189 * 176.12008 * 1 2 3 32 32 H 1.09001 * 110.37180 * 323.75759 * 4 2 1 33 33 H 1.09009 * 110.36328 * 86.07903 * 4 2 1 34 34 H 0.97008 * 119.99862 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.88483 * 239.52097 * 14 5 4 36 36 H 1.09004 * 109.88094 * 118.35872 * 14 5 4 37 37 H 1.09005 * 109.47537 * 48.51979 * 17 15 14 38 38 H 1.08997 * 109.47438 * 168.52004 * 17 15 14 39 39 H 0.97002 * 119.99270 * 0.02562 * 18 17 15 40 40 H 1.07994 * 120.05419 * 0.02562 * 22 21 19 41 41 H 1.08004 * 119.89886 * 180.23328 * 23 22 21 42 42 H 1.07992 * 119.94782 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8071 -1.1999 5 7 3.4271 -1.2434 -0.7728 6 6 4.4645 -1.5657 -1.6065 7 1 5.4759 -1.5830 -1.2283 8 6 4.2160 -1.8704 -2.9379 9 7 5.1755 -1.7496 -3.8307 10 14 2.5200 -2.4519 -3.4621 11 1 1.6470 -1.2757 -3.7061 12 1 2.6341 -3.2507 -4.7088 13 1 1.9308 -3.2916 -2.3884 14 6 3.4674 -1.2738 0.6965 15 6 2.0861 -0.8075 1.2025 16 1 1.4468 -1.6627 1.4216 17 6 2.2349 0.0885 2.4338 18 7 2.6467 -0.7233 3.5817 19 6 2.8401 -0.1431 4.7827 20 8 2.6723 1.0538 4.9137 21 6 3.2557 -0.9613 5.9392 22 6 3.4437 -2.3378 5.7937 23 6 3.8363 -3.0954 6.8757 24 6 4.0349 -2.4976 8.1104 25 17 4.5234 -3.4619 9.4687 26 6 3.8459 -1.1358 8.2653 27 6 3.4577 -0.3625 7.1869 28 9 3.2737 0.9674 7.3381 29 1 -0.3634 0.4525 0.9227 30 1 -0.3634 0.5729 -0.8531 31 1 -0.3633 -1.0253 -0.0695 32 1 1.4518 -1.6709 -1.4018 33 1 2.1559 -0.1727 -2.0836 34 1 5.0018 -1.9621 -4.7611 35 1 4.2426 -0.5993 1.0602 36 1 3.6650 -2.2890 1.0409 37 1 2.9888 0.8514 2.2391 38 1 1.2807 0.5681 2.6517 39 1 2.7802 -1.6784 3.4772 40 1 3.2857 -2.8068 4.8338 41 1 3.9854 -4.1591 6.7624 42 1 4.0026 -0.6760 9.2298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092799791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:38 Heat of formation + Delta-G solvation = -38.320806 kcal Electronic energy + Delta-G solvation = -26609.134444 eV Core-core repulsion = 22530.093142 eV Total energy + Delta-G solvation = -4079.041303 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -49.24194 -40.42322 -39.05597 -38.27321 -36.97818 -34.96024 -33.15043 -31.91069 -31.16389 -31.11948 -29.70070 -26.26224 -25.82625 -24.37009 -23.40680 -22.47139 -21.13978 -20.33202 -19.81675 -18.63227 -17.63892 -17.17174 -16.84333 -16.19369 -15.97081 -15.74087 -15.44615 -15.19881 -14.94849 -14.79071 -13.99448 -13.85565 -13.81134 -13.65809 -13.30594 -13.00193 -12.99325 -12.90259 -12.60981 -12.19443 -12.09762 -11.80077 -11.59415 -11.55102 -11.44157 -11.16016 -10.95270 -10.63415 -10.41503 -10.22481 -9.99530 -9.84614 -9.63968 -9.47171 -9.33464 -9.09707 -8.71371 -7.08032 -5.97574 -3.28200 0.03142 0.51707 1.40599 2.34973 2.87771 3.19738 3.31792 3.44617 3.46782 3.66479 4.02126 4.26710 4.33785 4.51597 4.52131 4.75335 4.83129 4.90364 4.94864 5.08277 5.20019 5.35622 5.38808 5.42652 5.45588 5.48824 5.57376 5.69520 5.84615 5.87186 5.99117 6.04395 6.04979 6.18112 6.25642 6.33843 6.45219 6.60257 6.69991 6.76050 7.27830 7.67783 7.98053 8.28352 8.80304 9.65763 10.14345 11.18550 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.002399 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.752654 B =11669.195677 C =12598.614182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.609 5.609 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.022 3.978 9 N -0.908 5.908 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.140 3.860 15 C -0.113 4.113 16 H 0.082 0.918 17 C 0.133 3.867 18 N -0.717 5.717 19 C 0.555 3.445 20 O -0.524 6.524 21 C -0.166 4.166 22 C -0.043 4.043 23 C -0.128 4.128 24 C 0.014 3.986 25 Cl -0.050 7.050 26 C -0.159 4.159 27 C 0.174 3.826 28 F -0.106 7.106 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.263 0.737 35 H 0.035 0.965 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.673 -2.539 24.867 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.335 5.335 6 C -0.370 4.370 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.551 5.551 10 Si 0.713 3.287 11 H -0.211 1.211 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.100 0.900 17 C 0.010 3.990 18 N -0.369 5.369 19 C 0.341 3.659 20 O -0.401 6.401 21 C -0.170 4.170 22 C -0.062 4.062 23 C -0.147 4.147 24 C -0.013 4.013 25 Cl -0.021 7.021 26 C -0.179 4.179 27 C 0.153 3.847 28 F -0.084 7.084 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.236 0.764 40 H 0.167 0.833 41 H 0.167 0.833 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.611 -1.741 24.827 25.751 hybrid contribution -0.764 -0.837 -0.340 1.183 sum -7.375 -2.578 24.487 25.703 Atomic orbital electron populations 1.21734 0.94941 1.01773 1.01449 1.22312 0.94884 0.99570 0.94871 0.89876 1.22031 0.87264 0.95653 0.95929 1.44740 1.09941 1.78336 1.00530 1.18629 0.86643 1.41461 0.90278 0.89096 1.25001 0.96909 1.00166 0.95597 1.69849 1.33033 1.50571 1.01694 0.86970 0.85598 0.79161 0.76926 1.21146 1.23074 1.20300 1.21419 0.93409 0.97995 0.85726 1.22536 0.98840 0.98223 0.93586 0.89996 1.21484 1.00634 0.93596 0.83305 1.45926 1.69482 1.12386 1.09088 1.17860 0.78159 0.87252 0.82634 1.90861 1.50617 1.14283 1.84294 1.20253 1.07850 0.94998 0.93902 1.21241 0.94251 0.91336 0.99404 1.21088 1.01411 1.01626 0.90535 1.20847 0.99405 0.91325 0.89751 1.98413 1.89475 1.70651 1.43520 1.20978 1.04559 0.92472 0.99854 1.17426 0.96549 0.78423 0.92318 1.91642 1.91582 1.29271 1.95911 0.92715 0.92487 0.92712 0.95558 0.92260 0.92682 0.94694 0.95380 0.90661 0.91124 0.76372 0.83332 0.83327 0.82902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.31 37.16 0.35 -1.45 16 2 C -0.10 -1.50 3.09 -88.47 -0.27 -1.78 16 3 H 0.08 1.29 8.05 -51.93 -0.42 0.88 16 4 C 0.12 2.42 4.16 -2.53 -0.01 2.41 16 5 N -0.61 -14.21 3.21 -170.07 -0.55 -14.76 16 6 C -0.24 -6.78 10.57 -15.06 -0.16 -6.94 16 7 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 8 C 0.02 0.63 5.43 -17.43 -0.09 0.54 16 9 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 10 Si 0.88 22.22 24.27 -169.99 -4.13 18.10 16 11 H -0.28 -6.88 6.49 56.52 0.37 -6.52 16 12 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 13 H -0.28 -6.82 6.66 56.52 0.38 -6.44 16 14 C 0.14 2.54 6.75 -3.07 -0.02 2.51 16 15 C -0.11 -1.58 2.43 -88.79 -0.22 -1.80 16 16 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 17 C 0.13 1.69 5.02 -4.04 -0.02 1.67 16 18 N -0.72 -7.97 5.42 -61.32 -0.33 -8.30 16 19 C 0.56 7.12 7.77 -12.43 -0.10 7.02 16 20 O -0.52 -8.75 15.34 5.30 0.08 -8.67 16 21 C -0.17 -1.69 5.88 -104.91 -0.62 -2.31 16 22 C -0.04 -0.31 9.54 -39.20 -0.37 -0.68 16 23 C -0.13 -0.81 9.81 -39.60 -0.39 -1.20 16 24 C 0.01 0.10 6.32 -39.40 -0.25 -0.15 16 25 Cl -0.05 -0.33 28.95 -51.86 -1.50 -1.83 16 26 C -0.16 -1.27 9.79 -39.53 -0.39 -1.65 16 27 C 0.17 1.82 7.28 -38.97 -0.28 1.54 16 28 F -0.11 -1.37 15.55 2.25 0.04 -1.33 16 29 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.03 0.57 5.42 -51.93 -0.28 0.29 16 33 H 0.06 1.35 6.63 -51.92 -0.34 1.00 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 35 H 0.04 0.65 7.68 -51.92 -0.40 0.25 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.08 7.93 -51.93 -0.41 0.66 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.40 3.44 6.50 -40.82 -0.27 3.17 16 40 H 0.15 0.71 6.40 -52.49 -0.34 0.37 16 41 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -33.68 359.79 -8.48 -42.15 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.44 Total: -1.48 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.84 Total: -2.28 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.10 Total: -50.08 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.13 Total: 18.10 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.50 Total: -1.83 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.68 -8.48 -42.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092799791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.833 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds