Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.64076 * 2 1 4 4 C 1.54328 * 110.87250 * 236.75631 * 2 1 3 5 5 N 1.47019 * 107.26954 * 219.37432 * 4 2 1 6 6 C 1.36946 * 125.64345 * 178.98939 * 5 4 2 7 7 H 1.07999 * 119.99557 * 174.78250 * 6 5 4 8 8 C 1.38806 * 120.00004 * 354.77740 * 6 5 4 9 9 N 1.31612 * 120.00403 * 7.05747 * 8 6 5 10 10 Si 1.86799 * 119.99652 * 187.05539 * 8 6 5 11 11 H 1.48502 * 109.47251 * 94.99360 * 10 8 6 12 12 H 1.48510 * 109.47237 * 214.98587 * 10 8 6 13 13 H 1.48493 * 109.47749 * 334.98967 * 10 8 6 14 14 C 1.47425 * 108.70628 * 358.93417 * 5 4 2 15 15 C 1.54912 * 104.82973 * 24.13606 * 14 5 4 16 16 H 1.08993 * 111.00587 * 81.05931 * 15 14 5 17 17 C 1.52997 * 111.03530 * 204.90287 * 15 14 5 18 18 N 1.46500 * 109.46954 * 290.39179 * 17 15 14 19 19 C 1.34773 * 120.00399 * 180.02562 * 18 17 15 20 20 O 1.21552 * 119.99931 * 359.97438 * 19 18 17 21 21 C 1.47849 * 120.00296 * 180.02562 * 19 18 17 22 22 C 1.39570 * 120.12639 * 359.72297 * 21 19 18 23 23 C 1.38177 * 119.85217 * 179.74544 * 22 21 19 24 24 F 1.35100 * 119.95149 * 180.22732 * 23 22 21 25 25 C 1.38579 * 120.10776 * 0.52840 * 23 22 21 26 26 C 1.38412 * 120.25227 * 359.72602 * 25 23 22 27 27 Cl 1.73600 * 119.92364 * 179.97438 * 26 25 23 28 28 C 1.38110 * 120.14658 * 0.02562 * 26 25 23 29 29 H 1.08997 * 109.46503 * 296.85462 * 1 2 3 30 30 H 1.08996 * 109.47149 * 56.85479 * 1 2 3 31 31 H 1.09004 * 109.46772 * 176.86000 * 1 2 3 32 32 H 1.09002 * 109.87938 * 338.79200 * 4 2 1 33 33 H 1.08994 * 109.88316 * 99.79626 * 4 2 1 34 34 H 0.97000 * 120.00448 * 180.02562 * 9 8 6 35 35 H 1.08993 * 110.37045 * 265.29353 * 14 5 4 36 36 H 1.09002 * 110.36114 * 142.96925 * 14 5 4 37 37 H 1.09002 * 109.47607 * 50.39048 * 17 15 14 38 38 H 1.08995 * 109.47227 * 170.39643 * 17 15 14 39 39 H 0.97000 * 119.99743 * 0.02562 * 18 17 15 40 40 H 1.07997 * 120.07264 * 359.96971 * 22 21 19 41 41 H 1.07997 * 119.87443 * 179.74207 * 25 23 22 42 42 H 1.07994 * 120.05161 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0799 -0.7905 -1.2060 5 7 3.2494 -1.5470 -0.7355 6 6 4.0126 -2.3916 -1.4968 7 1 4.9037 -2.8374 -1.0801 8 6 3.6409 -2.6747 -2.8038 9 7 2.6374 -2.0276 -3.3575 10 14 4.5649 -3.9741 -3.7770 11 1 3.8536 -5.2731 -3.6682 12 1 4.6362 -3.5668 -5.2033 13 1 5.9395 -4.1155 -3.2333 14 6 3.4653 -1.2447 0.6912 15 6 2.0790 -0.7935 1.2151 16 1 1.4470 -1.6530 1.4382 17 6 2.2229 0.1108 2.4408 18 7 2.7012 -0.6799 3.5776 19 6 2.9024 -0.0894 4.7722 20 8 2.6874 1.0994 4.9064 21 6 3.3857 -0.8873 5.9192 22 6 3.6289 -2.2535 5.7694 23 6 4.0855 -2.9927 6.8438 24 9 4.3260 -4.3143 6.6997 25 6 4.2913 -2.3819 8.0706 26 6 4.0465 -1.0285 8.2255 27 17 4.3066 -0.2722 9.7664 28 6 3.5948 -0.2786 7.1573 29 1 -0.3632 0.4642 0.9168 30 1 -0.3633 0.5619 -0.8604 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3190 -1.4772 -1.5771 33 1 2.3749 -0.1016 -1.9974 34 1 2.3774 -2.2257 -4.2707 35 1 4.1930 -0.4410 0.8028 36 1 3.7994 -2.1365 1.2215 37 1 2.9372 0.9052 2.2246 38 1 1.2551 0.5489 2.6847 39 1 2.8731 -1.6285 3.4704 40 1 3.4640 -2.7310 4.8149 41 1 4.6443 -2.9642 8.9089 42 1 3.4039 0.7773 7.2801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092998725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -61.442251 kcal Electronic energy + Delta-G solvation = -26403.092906 eV Core-core repulsion = 22323.048982 eV Total energy + Delta-G solvation = -4080.043924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.07625 -41.42674 -39.92151 -39.23371 -37.55032 -36.15971 -34.74881 -32.70429 -32.52727 -31.64025 -30.58665 -27.87159 -26.83595 -25.44566 -24.34099 -23.70575 -22.00854 -21.58708 -20.83066 -19.57786 -18.77034 -18.03943 -17.43134 -17.37687 -16.96358 -16.84867 -16.57769 -16.39182 -15.95754 -15.81422 -15.58030 -14.83525 -14.80105 -14.55718 -14.40253 -14.26354 -14.11655 -13.43340 -13.29260 -13.22795 -13.09731 -12.90787 -12.86255 -12.68691 -12.45234 -12.39621 -12.18172 -11.92896 -11.85001 -11.58480 -11.46367 -11.36167 -11.06601 -10.67566 -10.35882 -10.06676 -9.94532 -8.87691 -7.85181 -5.19272 -0.59362 -0.21206 0.83083 1.46469 1.47577 1.52326 1.56473 1.99856 2.43473 2.49834 2.92935 3.32616 3.39180 3.59620 3.67638 3.77785 3.79406 3.83174 3.94540 3.96578 4.13245 4.38100 4.43927 4.51980 4.61666 4.66670 4.74800 4.81186 4.85224 4.86730 4.90689 4.98162 5.10304 5.15985 5.29671 5.38099 5.41575 5.47385 5.50305 5.72833 5.83665 6.21626 6.39241 7.03834 7.11555 7.79624 8.44155 9.25527 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.002400 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.673584 B =11665.116334 C =13049.414051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.083 0.917 8 C -0.066 4.066 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.286 1.286 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.136 3.864 15 C -0.092 4.092 16 H 0.091 0.909 17 C 0.144 3.856 18 N -0.708 5.708 19 C 0.560 3.440 20 O -0.566 6.566 21 C -0.098 4.098 22 C -0.110 4.110 23 C 0.105 3.895 24 F -0.130 7.130 25 C -0.113 4.113 26 C -0.019 4.019 27 Cl -0.042 7.042 28 C -0.065 4.065 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.018 0.982 33 H -0.004 1.004 34 H 0.246 0.754 35 H 0.018 0.982 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.412 0.588 40 H 0.163 0.837 41 H 0.172 0.828 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 0.531 25.624 25.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 H 0.094 0.906 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.598 5.598 10 Si 0.803 3.197 11 H -0.213 1.213 12 H -0.224 1.224 13 H -0.192 1.192 14 C 0.011 3.989 15 C -0.111 4.111 16 H 0.109 0.891 17 C 0.020 3.980 18 N -0.359 5.359 19 C 0.348 3.652 20 O -0.447 6.447 21 C -0.101 4.101 22 C -0.130 4.130 23 C 0.086 3.914 24 F -0.109 7.109 25 C -0.132 4.132 26 C -0.045 4.045 27 Cl -0.013 7.013 28 C -0.085 4.085 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.015 0.985 34 H 0.055 0.945 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.250 0.750 40 H 0.181 0.819 41 H 0.190 0.810 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.404 1.306 25.611 25.648 hybrid contribution 0.662 -1.166 -1.195 1.796 sum 0.258 0.140 24.416 24.418 Atomic orbital electron populations 1.21646 0.92979 1.01665 1.02252 1.22307 0.96967 0.98598 0.94143 0.90648 1.20998 0.88247 0.91948 0.92336 1.44796 1.32561 1.51486 1.06686 1.19446 1.04712 1.18506 0.94356 0.89951 1.25642 0.99808 1.02063 0.98380 1.70193 1.31785 1.44157 1.13676 0.85111 0.78300 0.78837 0.77414 1.21323 1.22432 1.19243 1.21786 0.95113 0.97603 0.84416 1.22491 0.97083 0.98439 0.93131 0.89057 1.21253 1.00228 0.93238 0.83292 1.45883 1.66648 1.13906 1.09487 1.18192 0.77420 0.86661 0.82949 1.90789 1.53079 1.16358 1.84427 1.19506 1.03473 0.93208 0.93948 1.21576 0.98323 0.92927 1.00137 1.17270 1.01573 0.78417 0.94158 1.91576 1.92013 1.31007 1.96257 1.21391 1.00222 0.93678 0.97949 1.20448 1.02914 0.92731 0.88455 1.98413 1.94885 1.81482 1.26535 1.21248 0.95672 1.01587 0.89986 0.90397 0.92851 0.93325 0.96412 0.98526 0.94470 0.96411 0.93166 0.91806 0.90005 0.75021 0.81914 0.81033 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.17 71.98 0.66 -2.93 16 2 C -0.10 -3.40 3.01 -9.60 -0.03 -3.42 16 3 H 0.08 2.46 8.04 -2.39 -0.02 2.44 16 4 C 0.19 9.11 4.98 86.73 0.43 9.54 16 5 N -0.63 -31.28 3.39 -691.99 -2.35 -33.63 16 6 C -0.24 -13.26 10.27 84.03 0.86 -12.39 16 7 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 8 C -0.07 -3.71 5.48 84.86 0.46 -3.25 16 9 N -0.95 -56.82 10.36 21.65 0.22 -56.60 16 10 Si 0.97 45.30 29.56 68.60 2.03 47.33 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 13 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 14 C 0.14 5.04 6.56 86.86 0.57 5.61 16 15 C -0.09 -2.68 2.51 -9.40 -0.02 -2.70 16 16 H 0.09 2.55 8.05 -2.39 -0.02 2.53 16 17 C 0.14 3.48 5.13 86.38 0.44 3.92 16 18 N -0.71 -14.80 5.40 -465.98 -2.52 -17.32 16 19 C 0.56 12.94 7.77 86.79 0.67 13.61 16 20 O -0.57 -16.99 16.35 -3.88 -0.06 -17.05 16 21 C -0.10 -1.78 5.87 -20.10 -0.12 -1.89 16 22 C -0.11 -1.63 9.52 22.58 0.21 -1.42 16 23 C 0.11 1.53 7.29 22.34 0.16 1.69 16 24 F -0.13 -2.10 17.26 44.97 0.78 -1.33 16 25 C -0.11 -1.42 9.80 22.39 0.22 -1.20 16 26 C -0.02 -0.27 6.31 22.28 0.14 -0.13 16 27 Cl -0.04 -0.57 28.95 -2.72 -0.08 -0.64 16 28 C -0.07 -1.12 9.37 22.55 0.21 -0.91 16 29 H 0.08 1.71 8.13 -2.39 -0.02 1.69 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.43 8.07 -2.39 -0.02 1.41 16 32 H 0.02 0.95 6.93 -2.39 -0.02 0.94 16 33 H 0.00 -0.20 7.61 -2.39 -0.02 -0.21 16 34 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.71 8.04 -2.39 -0.02 1.69 16 38 H 0.08 1.87 8.13 -2.39 -0.02 1.86 16 39 H 0.41 6.93 6.47 -92.71 -0.60 6.33 16 40 H 0.16 1.86 6.40 -2.91 -0.02 1.84 16 41 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.15 2.71 7.65 -2.91 -0.02 2.68 16 Total: -1.00 -68.88 367.60 3.36 -65.52 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.46 Total: 9.60 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 4.89 Total: 4.12 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.64 Total: -107.55 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.06 Total: -17.05 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.33 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.64 kcal Total: -68.88 3.36 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092998725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.081 kcal (2) G-P(sol) polarization free energy of solvation -68.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds