Wall clock time and date at job start Sat Apr 11 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.64412 * 2 1 4 4 C 1.54318 * 110.72055 * 236.66082 * 2 1 3 5 5 N 1.47019 * 107.27182 * 219.44565 * 4 2 1 6 6 C 1.36937 * 125.64996 * 178.91826 * 5 4 2 7 7 H 1.07998 * 120.00181 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00053 * 0.03227 * 6 5 4 9 9 N 1.31622 * 119.99914 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00102 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47165 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47199 * 119.99411 * 10 8 6 13 13 H 1.48500 * 109.47213 * 239.99401 * 10 8 6 14 14 C 1.47419 * 108.70601 * 358.94320 * 5 4 2 15 15 C 1.54911 * 104.82998 * 24.12511 * 14 5 4 16 16 H 1.09005 * 111.03791 * 81.08162 * 15 14 5 17 17 C 1.52998 * 111.00851 * 204.91721 * 15 14 5 18 18 N 1.46510 * 109.47193 * 287.20075 * 17 15 14 19 19 C 1.34776 * 120.00135 * 179.97438 * 18 17 15 20 20 O 1.21563 * 119.99756 * 0.02562 * 19 18 17 21 21 C 1.47771 * 120.00091 * 179.97438 * 19 18 17 22 22 C 1.39637 * 120.14511 * 359.97438 * 21 19 18 23 23 C 1.37896 * 119.91733 * 180.02562 * 22 21 19 24 24 C 1.38392 * 120.20489 * 359.72644 * 23 22 21 25 25 C 1.38466 * 120.29252 * 0.54759 * 24 23 22 26 26 F 1.35104 * 119.95813 * 179.72278 * 25 24 23 27 27 C 1.38375 * 120.07961 * 359.45593 * 25 24 23 28 28 Cl 1.73609 * 120.10284 * 180.29326 * 27 25 24 29 29 H 1.08999 * 109.47595 * 296.86092 * 1 2 3 30 30 H 1.09003 * 109.47131 * 56.86017 * 1 2 3 31 31 H 1.08999 * 109.47509 * 176.85871 * 1 2 3 32 32 H 1.09001 * 109.88735 * 338.86598 * 4 2 1 33 33 H 1.08996 * 109.88537 * 99.87356 * 4 2 1 34 34 H 0.96994 * 119.99807 * 180.02562 * 9 8 6 35 35 H 1.09005 * 110.36902 * 265.29452 * 14 5 4 36 36 H 1.09000 * 110.37252 * 142.96206 * 14 5 4 37 37 H 1.09001 * 109.47543 * 167.19871 * 17 15 14 38 38 H 1.09003 * 109.46838 * 47.19740 * 17 15 14 39 39 H 0.96993 * 119.99700 * 359.97438 * 18 17 15 40 40 H 1.08009 * 120.03904 * 359.97438 * 22 21 19 41 41 H 1.08005 * 119.89267 * 180.02562 * 23 22 21 42 42 H 1.08003 * 119.85376 * 180.29917 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0760 -0.7933 -1.2058 5 7 3.2444 -1.5520 -0.7362 6 6 4.0036 -2.4004 -1.4972 7 1 4.8455 -2.9137 -1.0568 8 6 3.6909 -2.6007 -2.8348 9 7 2.6646 -1.9754 -3.3715 10 14 4.7269 -3.7575 -3.8731 11 1 5.8142 -4.3309 -3.0399 12 1 3.8720 -4.8538 -4.3951 13 1 5.3183 -3.0069 -5.0098 14 6 3.4632 -1.2487 0.6897 15 6 2.0789 -0.7934 1.2152 16 1 1.4446 -1.6507 1.4407 17 6 2.2276 0.1121 2.4394 18 7 2.6327 -0.6919 3.5953 19 6 2.8257 -0.1025 4.7918 20 8 2.6633 1.0962 4.9121 21 6 3.2337 -0.9135 5.9577 22 6 3.4195 -2.2910 5.8233 23 6 3.7998 -3.0434 6.9146 24 6 4.0034 -2.4368 8.1417 25 6 3.8161 -1.0725 8.2860 26 9 4.0113 -0.4882 9.4885 27 6 3.4345 -0.3060 7.1990 28 17 3.2069 1.4059 7.3776 29 1 -0.3634 0.4643 0.9168 30 1 -0.3633 0.5618 -0.8605 31 1 -0.3634 -1.0261 -0.0563 32 1 1.3130 -1.4785 -1.5750 33 1 2.3716 -0.1061 -1.9985 34 1 2.4459 -2.1156 -4.3061 35 1 4.1931 -0.4465 0.7994 36 1 3.7958 -2.1406 1.2207 37 1 1.2746 0.5974 2.6504 38 1 2.9852 0.8702 2.2407 39 1 2.7619 -1.6484 3.4993 40 1 3.2649 -2.7665 4.8660 41 1 3.9438 -4.1087 6.8100 42 1 4.3058 -3.0308 8.9915 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093001035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:57 Heat of formation + Delta-G solvation = -32.012261 kcal Electronic energy + Delta-G solvation = -26630.414377 eV Core-core repulsion = 22551.646633 eV Total energy + Delta-G solvation = -4078.767744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.36184 -40.45052 -38.73061 -37.87795 -36.70122 -34.78477 -33.04394 -31.77300 -30.95049 -30.75764 -29.18229 -26.10707 -25.40491 -24.29746 -23.19683 -22.64048 -20.93494 -20.08406 -19.42966 -18.57201 -17.14090 -16.95168 -16.81639 -16.42907 -16.22265 -15.73837 -15.35195 -14.91822 -14.74232 -14.31929 -13.91766 -13.82757 -13.66052 -13.45817 -12.97311 -12.85725 -12.70220 -12.53303 -12.14023 -11.84694 -11.84124 -11.71954 -11.44382 -11.35760 -11.24427 -10.84249 -10.80799 -10.17867 -10.00973 -9.97511 -9.91000 -9.67093 -9.54716 -9.53521 -9.15527 -8.99934 -8.63421 -6.86083 -5.74242 -3.07871 0.17351 0.49361 1.76871 2.46511 2.92499 3.28662 3.37067 3.42558 3.45110 3.67081 4.14715 4.25159 4.41070 4.46418 4.64235 4.91189 5.04818 5.16409 5.25456 5.28953 5.36022 5.48037 5.50159 5.53697 5.67848 5.72398 5.83992 5.98884 6.06132 6.10036 6.15420 6.24812 6.35242 6.45974 6.52833 6.59848 6.72505 6.90581 7.39715 7.54284 7.61622 7.81430 8.08478 8.23066 9.19131 9.79491 10.45435 11.37351 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017487 B = 0.002474 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.788258 B =11315.946593 C =12426.984533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 H 0.068 0.932 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.078 0.922 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.911 3.089 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.142 3.858 15 C -0.114 4.114 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.716 5.716 19 C 0.549 3.451 20 O -0.514 6.514 21 C -0.098 4.098 22 C -0.085 4.085 23 C -0.093 4.093 24 C -0.121 4.121 25 C 0.098 3.902 26 F -0.124 7.124 27 C -0.029 4.029 28 Cl -0.010 7.010 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.252 0.748 35 H 0.020 0.980 36 H 0.035 0.965 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.026 -0.806 22.489 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.357 4.357 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.568 5.568 10 Si 0.742 3.258 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.368 5.368 19 C 0.335 3.665 20 O -0.390 6.390 21 C -0.102 4.102 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.140 4.140 25 C 0.078 3.922 26 F -0.103 7.103 27 C -0.058 4.058 28 Cl 0.020 6.980 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.236 0.764 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.153 0.187 22.371 22.401 hybrid contribution 0.654 -0.887 -0.450 1.190 sum -0.499 -0.700 21.921 21.938 Atomic orbital electron populations 1.21697 0.95284 1.01622 1.00599 1.22435 0.95175 0.99140 0.96229 0.91373 1.21218 0.89093 0.93086 0.90739 1.44465 1.32619 1.51420 1.04732 1.19089 1.07624 1.17602 0.91371 0.90449 1.24807 0.98422 1.00327 0.96912 1.69971 1.28742 1.45500 1.12604 0.86058 0.79270 0.80121 0.80381 1.20530 1.21772 1.21761 1.21589 0.92989 0.97003 0.86893 1.22692 0.99456 0.98085 0.93103 0.90109 1.21461 1.00389 0.93748 0.83375 1.45978 1.69470 1.12255 1.09060 1.17921 0.78541 0.87398 0.82684 1.90884 1.50012 1.13909 1.84184 1.19765 1.03257 0.94177 0.92998 1.21469 0.97023 0.91742 1.00148 1.21097 0.97688 1.01077 0.91253 1.21350 1.00694 0.92026 0.99923 1.17305 1.03214 0.91181 0.80501 1.91562 1.92562 1.84402 1.41757 1.21088 1.03003 0.88325 0.93375 1.98443 1.94580 1.07620 1.97405 0.93643 0.92750 0.92713 0.93287 0.94033 0.93793 0.96284 0.94686 0.91305 0.91051 0.76449 0.83742 0.83478 0.83346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.16 37.16 0.34 -1.67 16 2 C -0.11 -1.92 3.02 -88.79 -0.27 -2.18 16 3 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 4 C 0.18 4.27 4.97 -3.07 -0.02 4.25 16 5 N -0.61 -14.86 3.39 -170.08 -0.58 -15.44 16 6 C -0.23 -6.19 10.28 -15.06 -0.15 -6.35 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.55 10.31 55.49 0.57 -25.98 16 10 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.14 2.70 6.65 -2.53 -0.02 2.68 16 15 C -0.11 -1.77 2.50 -88.47 -0.22 -1.99 16 16 H 0.08 1.22 8.05 -51.93 -0.42 0.81 16 17 C 0.13 1.81 5.13 -4.04 -0.02 1.79 16 18 N -0.72 -8.43 5.45 -61.27 -0.33 -8.77 16 19 C 0.55 7.19 7.77 -12.36 -0.10 7.09 16 20 O -0.51 -8.33 13.97 5.31 0.07 -8.25 16 21 C -0.10 -1.05 5.88 -104.95 -0.62 -1.67 16 22 C -0.08 -0.64 9.54 -39.18 -0.37 -1.01 16 23 C -0.09 -0.54 10.03 -39.65 -0.40 -0.94 16 24 C -0.12 -0.81 10.02 -39.44 -0.40 -1.20 16 25 C 0.10 0.94 7.27 -39.45 -0.29 0.66 16 26 F -0.12 -1.28 16.83 2.25 0.04 -1.24 16 27 C -0.03 -0.33 6.36 -39.00 -0.25 -0.58 16 28 Cl -0.01 -0.13 25.68 -51.86 -1.33 -1.46 16 29 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.05 1.26 7.00 -51.93 -0.36 0.90 16 33 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 34 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.07 1.06 7.96 -51.93 -0.41 0.64 16 39 H 0.40 3.81 6.50 -40.82 -0.27 3.55 16 40 H 0.14 0.79 6.40 -52.48 -0.34 0.45 16 41 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -32.21 362.72 -9.49 -41.70 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.51 Total: -1.22 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.87 Total: -1.45 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.34 Total: -50.18 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.07 Total: -8.25 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.33 Total: -1.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.21 -9.49 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093001035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.686 kcal (2) G-P(sol) polarization free energy of solvation -32.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds