Wall clock time and date at job start Sat Apr 11 2020 05:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64412 * 2 1 4 4 C 1.54322 * 110.71873 * 236.85669 * 2 1 3 5 5 N 1.47016 * 107.27584 * 219.44305 * 4 2 1 6 6 C 1.36934 * 125.65257 * 178.90450 * 5 4 2 7 7 H 1.08001 * 120.00082 * 180.02562 * 6 5 4 8 8 C 1.38818 * 120.00056 * 0.02904 * 6 5 4 9 9 N 1.31621 * 119.99528 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00255 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47125 * 60.00153 * 10 8 6 12 12 H 1.48500 * 109.47216 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47141 * 300.00176 * 10 8 6 14 14 C 1.47425 * 108.70144 * 358.94568 * 5 4 2 15 15 C 1.54913 * 104.83172 * 24.12623 * 14 5 4 16 16 H 1.08993 * 111.00353 * 81.06953 * 15 14 5 17 17 C 1.53005 * 111.00185 * 204.91813 * 15 14 5 18 18 N 1.46490 * 109.47021 * 287.19367 * 17 15 14 19 19 C 1.34778 * 120.00109 * 179.97438 * 18 17 15 20 20 O 1.21584 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.47621 * 120.00574 * 179.97438 * 19 18 17 22 22 C 1.39889 * 120.17250 * 89.72864 * 21 19 18 23 23 F 1.35089 * 120.10648 * 0.02562 * 22 21 19 24 24 C 1.38250 * 119.78999 * 179.72438 * 22 21 19 25 25 C 1.38287 * 120.14988 * 0.55448 * 24 22 21 26 26 C 1.38343 * 120.36656 * 359.72470 * 25 24 22 27 27 C 1.38080 * 120.20264 * 359.97438 * 26 25 24 28 28 Cl 1.73598 * 120.07918 * 180.02562 * 27 26 25 29 29 H 1.08994 * 109.47357 * 181.68934 * 1 2 3 30 30 H 1.08998 * 109.46865 * 301.68696 * 1 2 3 31 31 H 1.08994 * 109.46919 * 61.68521 * 1 2 3 32 32 H 1.09005 * 109.88278 * 338.86758 * 4 2 1 33 33 H 1.09005 * 109.88137 * 99.87244 * 4 2 1 34 34 H 0.97004 * 119.99644 * 179.97438 * 9 8 6 35 35 H 1.08996 * 110.36900 * 142.96779 * 14 5 4 36 36 H 1.08998 * 110.36632 * 265.28801 * 14 5 4 37 37 H 1.09004 * 109.47149 * 47.19798 * 17 15 14 38 38 H 1.08997 * 109.46866 * 167.19429 * 17 15 14 39 39 H 0.96998 * 120.00572 * 0.02562 * 18 17 15 40 40 H 1.07990 * 119.92324 * 180.29526 * 24 22 21 41 41 H 1.08002 * 119.81382 * 179.69954 * 25 24 22 42 42 H 1.08001 * 119.90129 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7892 -1.2086 5 7 3.2445 -1.5495 -0.7417 6 6 4.0034 -2.3955 -1.5056 7 1 4.8454 -2.9103 -1.0670 8 6 3.6905 -2.5915 -2.8438 9 7 2.6640 -1.9644 -3.3782 10 14 4.7261 -3.7449 -3.8860 11 1 4.6837 -5.1106 -3.3040 12 1 4.1875 -3.7801 -5.2694 13 1 6.1300 -3.2617 -3.9129 14 6 3.4633 -1.2511 0.6853 15 6 2.0790 -0.7976 1.2124 16 1 1.4452 -1.6561 1.4346 17 6 2.2279 0.1037 2.4398 18 7 2.6329 -0.7042 3.5926 19 6 2.8261 -0.1190 4.7912 20 8 2.6638 1.0795 4.9158 21 6 3.2337 -0.9331 5.9532 22 6 4.5901 -1.1403 6.2255 23 9 5.5327 -0.5953 5.4259 24 6 4.9630 -1.8994 7.3191 25 6 3.9988 -2.4621 8.1353 26 6 2.6556 -2.2662 7.8686 27 6 2.2665 -1.5055 6.7839 28 17 0.5800 -1.2612 6.4526 29 1 -0.3634 -1.0271 0.0303 30 1 -0.3633 0.5398 0.8745 31 1 -0.3633 0.4874 -0.9047 32 1 1.3129 -1.4731 -1.5801 33 1 2.3716 -0.0991 -1.9990 34 1 2.4455 -2.1011 -4.3133 35 1 3.7961 -2.1448 1.2131 36 1 4.1932 -0.4494 0.7976 37 1 2.9855 0.8625 2.2436 38 1 1.2750 0.5883 2.6524 39 1 2.7627 -1.6603 3.4933 40 1 6.0095 -2.0568 7.5341 41 1 4.2962 -3.0582 8.9854 42 1 1.9089 -2.7088 8.5112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093151774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:59 Heat of formation + Delta-G solvation = -62.794355 kcal Electronic energy + Delta-G solvation = -26988.268494 eV Core-core repulsion = 22908.165939 eV Total energy + Delta-G solvation = -4080.102556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.17952 -41.29138 -39.93766 -39.28219 -37.61723 -36.14582 -34.73192 -32.68386 -32.55363 -31.60968 -30.63832 -27.88377 -26.83282 -25.32308 -24.14981 -23.92340 -22.06171 -21.67353 -20.85174 -19.38924 -18.81806 -18.39685 -17.97165 -17.53534 -16.95621 -16.68464 -16.37382 -16.18436 -15.88110 -15.67434 -15.56777 -14.87162 -14.81950 -14.51950 -14.41123 -14.32704 -14.15545 -13.46142 -13.32560 -13.21326 -13.14289 -12.87647 -12.73819 -12.65911 -12.49760 -12.45257 -12.21165 -11.99360 -11.85340 -11.62721 -11.51349 -11.40635 -11.09762 -10.70134 -10.24708 -10.17375 -9.88254 -8.90541 -7.84972 -5.20908 -0.32515 -0.13212 0.83879 1.27559 1.45047 1.48471 1.54762 1.95128 2.28176 2.49058 2.99095 3.32464 3.38403 3.57003 3.71362 3.76547 3.80111 3.89699 3.92490 4.10633 4.26253 4.33013 4.46442 4.56738 4.62134 4.70530 4.75466 4.80845 4.85033 4.93226 4.99649 5.05731 5.10496 5.11594 5.25121 5.33738 5.42128 5.46065 5.56432 5.70367 5.80633 6.19539 6.28459 6.94000 7.10030 7.77257 8.42095 9.24998 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.002889 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.165930 B = 9690.434202 C =10696.293447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.074 0.926 4 C 0.193 3.807 5 N -0.628 5.628 6 C -0.246 4.246 7 H 0.082 0.918 8 C -0.066 4.066 9 N -0.950 5.950 10 Si 0.979 3.021 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.138 3.862 15 C -0.089 4.089 16 H 0.091 0.909 17 C 0.144 3.856 18 N -0.703 5.703 19 C 0.564 3.436 20 O -0.564 6.564 21 C -0.179 4.179 22 C 0.120 3.880 23 F -0.141 7.141 24 C -0.141 4.141 25 C -0.043 4.043 26 C -0.113 4.113 27 C 0.006 3.994 28 Cl -0.052 7.052 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.000 1.000 34 H 0.247 0.753 35 H 0.045 0.955 36 H 0.015 0.985 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.412 0.588 40 H 0.175 0.825 41 H 0.194 0.806 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.181 -2.611 27.587 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.093 0.907 4 C 0.068 3.932 5 N -0.354 5.354 6 C -0.375 4.375 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.200 1.200 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.013 3.987 15 C -0.109 4.109 16 H 0.109 0.891 17 C 0.020 3.980 18 N -0.353 5.353 19 C 0.349 3.651 20 O -0.443 6.443 21 C -0.184 4.184 22 C 0.099 3.901 23 F -0.119 7.119 24 C -0.160 4.160 25 C -0.061 4.061 26 C -0.131 4.131 27 C -0.022 4.022 28 Cl -0.023 7.023 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.018 0.982 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.192 0.808 41 H 0.211 0.789 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.412 -1.784 27.357 27.451 hybrid contribution 0.619 -0.471 -1.739 1.905 sum -0.793 -2.255 25.618 25.730 Atomic orbital electron populations 1.21636 0.92862 1.01801 1.02135 1.22318 0.97081 0.98544 0.94100 0.90745 1.20972 0.88081 0.91961 0.92210 1.44769 1.32727 1.51286 1.06641 1.19431 1.08040 1.17984 0.92014 0.90046 1.25660 0.99817 1.02215 0.98167 1.70188 1.30301 1.46962 1.12459 0.85152 0.77943 0.78824 0.77410 1.20022 1.22047 1.20495 1.21742 0.95025 0.97370 0.84596 1.22470 0.97117 0.98317 0.92983 0.89098 1.21256 1.00595 0.93061 0.83069 1.45963 1.68143 1.12746 1.08417 1.18192 0.76690 0.86966 0.83217 1.90793 1.52498 1.15921 1.85070 1.19757 0.93407 1.05374 0.99833 1.17879 0.83301 0.96935 0.91941 1.91544 1.63514 1.84024 1.72823 1.21650 1.03966 0.97460 0.92880 1.21682 0.90142 0.95543 0.98696 1.21549 0.98736 0.97510 0.95304 1.20888 0.84885 0.99376 0.97025 1.98423 1.13227 1.95652 1.95013 0.93089 0.90671 0.92730 0.96397 0.98189 0.94419 0.93633 0.96692 0.92183 0.90226 0.75197 0.80750 0.78858 0.80664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.13 71.98 0.66 -3.18 16 2 C -0.10 -3.66 3.01 -9.60 -0.03 -3.69 16 3 H 0.07 2.63 8.04 -2.39 -0.02 2.61 16 4 C 0.19 9.62 4.97 86.73 0.43 10.05 16 5 N -0.63 -32.71 3.39 -691.99 -2.35 -35.06 16 6 C -0.25 -13.97 10.28 84.04 0.86 -13.11 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 8 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 9 N -0.95 -57.86 10.31 21.65 0.22 -57.63 16 10 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.14 5.61 6.65 86.86 0.58 6.19 16 15 C -0.09 -2.93 2.50 -9.40 -0.02 -2.95 16 16 H 0.09 2.86 8.04 -2.39 -0.02 2.84 16 17 C 0.14 4.18 5.13 86.38 0.44 4.62 16 18 N -0.70 -18.90 5.50 -466.19 -2.56 -21.47 16 19 C 0.56 16.58 5.95 86.72 0.52 17.10 16 20 O -0.56 -20.77 17.11 -3.98 -0.07 -20.84 16 21 C -0.18 -4.14 5.64 -20.03 -0.11 -4.25 16 22 C 0.12 2.45 7.29 22.67 0.17 2.62 16 23 F -0.14 -3.61 16.83 44.97 0.76 -2.86 16 24 C -0.14 -1.57 10.01 22.28 0.22 -1.34 16 25 C -0.04 -0.26 10.03 22.31 0.22 -0.04 16 26 C -0.11 -1.09 9.81 22.26 0.22 -0.88 16 27 C 0.01 0.11 6.35 22.60 0.14 0.25 16 28 Cl -0.05 -1.04 28.04 -2.72 -0.08 -1.11 16 29 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 30 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.02 0.99 7.06 -2.38 -0.02 0.97 16 33 H 0.00 -0.01 7.51 -2.38 -0.02 -0.03 16 34 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.02 0.64 7.91 -2.39 -0.02 0.62 16 37 H 0.06 1.92 7.96 -2.39 -0.02 1.90 16 38 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.41 9.67 8.46 -92.71 -0.78 8.88 16 40 H 0.18 1.00 8.06 -2.92 -0.02 0.98 16 41 H 0.19 -0.52 8.06 -2.91 -0.02 -0.54 16 42 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -76.54 370.28 2.98 -73.56 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.26 Total: 9.16 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.76 Total: 8.08 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -4.69 Total: -114.16 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.76 Total: -2.86 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.11 kcal Total: -76.54 2.98 -73.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093151774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.769 kcal (2) G-P(sol) polarization free energy of solvation -76.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds