Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.88639 * 2 1 4 4 C 1.54906 * 111.00401 * 236.06904 * 2 1 3 5 5 N 1.47419 * 104.83089 * 204.91565 * 4 2 1 6 6 C 1.36946 * 125.64978 * 204.17476 * 5 4 2 7 7 H 1.07997 * 119.99564 * 179.97438 * 6 5 4 8 8 C 1.38810 * 119.99749 * 359.95409 * 6 5 4 9 9 N 1.31616 * 120.00092 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99845 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47166 * 89.99679 * 10 8 6 12 12 H 1.48498 * 109.46901 * 209.99741 * 10 8 6 13 13 H 1.48499 * 109.47095 * 329.99618 * 10 8 6 14 14 C 1.47018 * 108.70385 * 24.13297 * 5 4 2 15 15 C 1.54321 * 107.27482 * 358.93758 * 14 5 4 16 16 H 1.08999 * 110.72063 * 96.16568 * 15 14 5 17 17 C 1.52997 * 110.72509 * 219.44765 * 15 14 5 18 18 N 1.46500 * 109.46743 * 288.51762 * 17 15 14 19 19 C 1.34780 * 120.00128 * 180.02562 * 18 17 15 20 20 O 1.21580 * 119.99801 * 359.97438 * 19 18 17 21 21 C 1.47645 * 119.99941 * 180.02562 * 19 18 17 22 22 C 1.39693 * 120.13401 * 359.71486 * 21 19 18 23 23 C 1.37776 * 119.89599 * 179.67681 * 22 21 19 24 24 C 1.38728 * 120.15301 * 0.63246 * 23 22 21 25 25 F 1.35100 * 119.86725 * 179.69625 * 24 23 22 26 26 C 1.38567 * 120.25976 * 359.66885 * 24 23 22 27 27 C 1.38025 * 120.10414 * 0.02562 * 26 24 23 28 28 Cl 1.73606 * 120.07677 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.46801 * 296.12461 * 1 2 3 30 30 H 1.09001 * 109.46998 * 56.12057 * 1 2 3 31 31 H 1.09000 * 109.47050 * 176.12349 * 1 2 3 32 32 H 1.08995 * 110.36826 * 323.76015 * 4 2 1 33 33 H 1.09005 * 110.35992 * 86.08085 * 4 2 1 34 34 H 0.97006 * 120.00416 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.88486 * 239.52066 * 14 5 4 36 36 H 1.09009 * 109.88530 * 118.35719 * 14 5 4 37 37 H 1.09000 * 109.47240 * 48.51656 * 17 15 14 38 38 H 1.09003 * 109.47230 * 168.52278 * 17 15 14 39 39 H 0.97007 * 120.00221 * 359.97438 * 18 17 15 40 40 H 1.08001 * 120.04987 * 359.97438 * 22 21 19 41 41 H 1.07998 * 119.92726 * 180.32362 * 23 22 21 42 42 H 1.08002 * 119.94168 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8072 -1.1999 5 7 3.4271 -1.2434 -0.7727 6 6 4.4646 -1.5660 -1.6064 7 1 5.4132 -1.8753 -1.1931 8 6 4.2967 -1.4957 -2.9825 9 7 3.1403 -1.1196 -3.4860 10 14 5.7121 -1.9350 -4.1197 11 1 5.6605 -3.3848 -4.4370 12 1 5.6007 -1.1492 -5.3748 13 1 7.0002 -1.6201 -3.4512 14 6 3.4674 -1.2738 0.6966 15 6 2.0862 -0.8074 1.2027 16 1 1.4468 -1.6625 1.4217 17 6 2.2349 0.0887 2.4338 18 7 2.6467 -0.7230 3.5817 19 6 2.8400 -0.1428 4.7828 20 8 2.6731 1.0543 4.9134 21 6 3.2556 -0.9609 5.9395 22 6 3.4434 -2.3375 5.7936 23 6 3.8377 -3.0951 6.8747 24 6 4.0357 -2.4962 8.1103 25 9 4.4164 -3.2457 9.1679 26 6 3.8452 -1.1323 8.2637 27 6 3.4563 -0.3621 7.1864 28 17 3.2185 1.3467 7.3793 29 1 -0.3633 0.4525 0.9227 30 1 -0.3633 0.5729 -0.8532 31 1 -0.3633 -1.0253 -0.0695 32 1 1.4519 -1.6710 -1.4016 33 1 2.1560 -0.1729 -2.0835 34 1 3.0228 -1.0708 -4.4477 35 1 4.2426 -0.5992 1.0603 36 1 3.6650 -2.2890 1.0412 37 1 2.9888 0.8515 2.2391 38 1 1.2806 0.5683 2.6516 39 1 2.7795 -1.6783 3.4776 40 1 3.2844 -2.8062 4.8337 41 1 3.9881 -4.1585 6.7612 42 1 4.0012 -0.6713 9.2279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093174239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -32.989631 kcal Electronic energy + Delta-G solvation = -26534.316881 eV Core-core repulsion = 22455.506755 eV Total energy + Delta-G solvation = -4078.810126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.47812 -40.45443 -38.73860 -37.84798 -36.69606 -34.76807 -33.04835 -31.68820 -31.20414 -30.77912 -29.11281 -26.08629 -25.28460 -24.11403 -23.52558 -22.60473 -20.91614 -19.91386 -19.45540 -18.56902 -17.75386 -17.12708 -16.80392 -16.19875 -15.73277 -15.56547 -15.38016 -15.02894 -14.70121 -14.35183 -14.04888 -13.87832 -13.74511 -13.47758 -13.20904 -13.06086 -12.67291 -12.64816 -11.97089 -11.84347 -11.70294 -11.57836 -11.50053 -11.37454 -11.17314 -10.90300 -10.82220 -10.23976 -10.04588 -9.95169 -9.87826 -9.68668 -9.55395 -9.39638 -9.26321 -8.95200 -8.67667 -6.86157 -5.67913 -3.09834 0.13915 0.51772 1.73191 2.43000 3.02316 3.30002 3.37997 3.43243 3.45191 3.63577 4.07827 4.34677 4.36997 4.46525 4.61661 4.87538 5.03758 5.19448 5.23977 5.26246 5.34856 5.47412 5.51008 5.51540 5.56041 5.73086 5.84547 6.03470 6.07674 6.09570 6.17230 6.23565 6.37395 6.50048 6.56906 6.58301 6.76164 6.91401 7.41812 7.50786 7.60498 7.83955 8.11443 8.33936 9.19547 9.80434 10.44978 11.35775 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.002478 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.632876 B =11298.657158 C =12272.951147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.224 4.224 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.111 4.111 16 H 0.077 0.923 17 C 0.134 3.866 18 N -0.718 5.718 19 C 0.550 3.450 20 O -0.516 6.516 21 C -0.136 4.136 22 C -0.044 4.044 23 C -0.157 4.157 24 C 0.135 3.865 25 F -0.128 7.128 26 C -0.159 4.159 27 C 0.039 3.961 28 Cl -0.015 7.015 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.013 0.987 33 H 0.106 0.894 34 H 0.252 0.748 35 H 0.024 0.976 36 H 0.017 0.983 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.399 0.601 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 -1.991 22.580 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.352 4.352 7 H 0.094 0.906 8 C -0.206 4.206 9 N -0.570 5.570 10 Si 0.744 3.256 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.130 4.130 16 H 0.095 0.905 17 C 0.011 3.989 18 N -0.370 5.370 19 C 0.336 3.664 20 O -0.392 6.392 21 C -0.141 4.141 22 C -0.063 4.063 23 C -0.175 4.175 24 C 0.115 3.885 25 F -0.107 7.107 26 C -0.179 4.179 27 C 0.011 3.989 28 Cl 0.014 6.986 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.763 -0.985 22.466 22.656 hybrid contribution 0.889 -0.922 -0.373 1.334 sum -1.874 -1.907 22.093 22.254 Atomic orbital electron populations 1.21655 0.95479 1.01402 1.00697 1.22604 0.94601 0.99557 0.96323 0.90983 1.21985 0.84023 0.95860 0.94702 1.44483 1.10543 1.79020 0.98988 1.19068 0.91038 1.37857 0.87220 0.90550 1.24784 0.97276 1.01928 0.96630 1.69793 1.22386 1.53762 1.11069 0.86082 0.81254 0.77807 0.80413 1.21646 1.21630 1.20693 1.21348 0.93428 0.97053 0.86691 1.22508 0.98645 0.98163 0.93681 0.90481 1.21501 1.00336 0.93654 0.83417 1.46000 1.69493 1.12292 1.09193 1.17913 0.78417 0.87433 0.82631 1.90884 1.50244 1.14043 1.84051 1.19955 1.05999 0.94219 0.93890 1.21215 0.94271 0.91587 0.99243 1.21206 1.03143 1.02001 0.91194 1.17692 0.97926 0.88581 0.84273 1.91555 1.88219 1.75856 1.55047 1.20978 1.04599 0.92148 1.00141 1.20717 0.97646 0.87713 0.92810 1.98447 1.94269 1.08596 1.97241 0.93642 0.92645 0.92971 0.96901 0.87610 0.93708 0.95768 0.96492 0.90967 0.91321 0.76609 0.83403 0.83264 0.83031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.31 37.16 0.35 -1.64 16 2 C -0.11 -1.96 3.09 -88.47 -0.27 -2.23 16 3 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 4 C 0.16 3.70 5.36 -2.53 -0.01 3.69 16 5 N -0.60 -14.98 3.39 -170.08 -0.58 -15.56 16 6 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 9 N -0.92 -26.42 10.09 55.49 0.56 -25.86 16 10 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.14 2.73 6.75 -3.07 -0.02 2.71 16 15 C -0.11 -1.73 2.43 -88.78 -0.22 -1.95 16 16 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 17 C 0.13 1.86 5.02 -4.04 -0.02 1.84 16 18 N -0.72 -8.51 5.42 -61.31 -0.33 -8.85 16 19 C 0.55 7.14 7.76 -12.42 -0.10 7.05 16 20 O -0.52 -8.29 13.96 5.30 0.07 -8.21 16 21 C -0.14 -1.43 5.88 -104.94 -0.62 -2.05 16 22 C -0.04 -0.34 9.53 -39.21 -0.37 -0.71 16 23 C -0.16 -1.09 10.01 -39.57 -0.40 -1.48 16 24 C 0.14 1.08 7.31 -39.28 -0.29 0.80 16 25 F -0.13 -1.07 17.26 2.25 0.04 -1.03 16 26 C -0.16 -1.34 9.79 -39.54 -0.39 -1.73 16 27 C 0.04 0.41 6.35 -39.09 -0.25 0.16 16 28 Cl -0.02 -0.18 26.02 -51.86 -1.35 -1.53 16 29 H 0.04 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 32 H 0.01 0.32 7.98 -51.93 -0.41 -0.09 16 33 H 0.11 2.82 5.88 -51.93 -0.31 2.52 16 34 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.02 0.48 7.68 -51.93 -0.40 0.09 16 36 H 0.02 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.07 1.13 7.93 -51.93 -0.41 0.71 16 38 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.40 3.79 6.50 -40.82 -0.27 3.53 16 40 H 0.15 0.81 6.40 -52.49 -0.34 0.47 16 41 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -31.48 362.63 -9.46 -40.94 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.46 Total: 0.08 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.85 Total: -2.20 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.35 Total: -50.27 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.07 Total: -8.21 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.03 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.35 Total: -1.53 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.48 -9.46 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093174239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.952 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds