Wall clock time and date at job start Sat Apr 11 2020 05:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.88639 * 2 1 4 4 C 1.54906 * 111.00401 * 236.06904 * 2 1 3 5 5 N 1.47419 * 104.83089 * 204.91565 * 4 2 1 6 6 C 1.36946 * 125.64978 * 204.17476 * 5 4 2 7 7 H 1.07997 * 119.99564 * 179.97438 * 6 5 4 8 8 C 1.38810 * 119.99749 * 359.95409 * 6 5 4 9 9 N 1.31616 * 120.00092 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99845 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47166 * 89.99679 * 10 8 6 12 12 H 1.48498 * 109.46901 * 209.99741 * 10 8 6 13 13 H 1.48499 * 109.47095 * 329.99618 * 10 8 6 14 14 C 1.47018 * 108.70385 * 24.13297 * 5 4 2 15 15 C 1.54321 * 107.27482 * 358.93758 * 14 5 4 16 16 H 1.08999 * 110.72063 * 96.16568 * 15 14 5 17 17 C 1.52997 * 110.72509 * 219.44765 * 15 14 5 18 18 N 1.46500 * 109.46743 * 288.51762 * 17 15 14 19 19 C 1.34780 * 120.00128 * 180.02562 * 18 17 15 20 20 O 1.21580 * 119.99801 * 359.97438 * 19 18 17 21 21 C 1.47645 * 119.99941 * 180.02562 * 19 18 17 22 22 C 1.39693 * 120.13401 * 359.71486 * 21 19 18 23 23 C 1.37776 * 119.89599 * 179.67681 * 22 21 19 24 24 C 1.38728 * 120.15301 * 0.63246 * 23 22 21 25 25 F 1.35100 * 119.86725 * 179.69625 * 24 23 22 26 26 C 1.38567 * 120.25976 * 359.66885 * 24 23 22 27 27 C 1.38025 * 120.10414 * 0.02562 * 26 24 23 28 28 Cl 1.73606 * 120.07677 * 180.02562 * 27 26 24 29 29 H 1.09001 * 109.46801 * 296.12461 * 1 2 3 30 30 H 1.09001 * 109.46998 * 56.12057 * 1 2 3 31 31 H 1.09000 * 109.47050 * 176.12349 * 1 2 3 32 32 H 1.08995 * 110.36826 * 323.76015 * 4 2 1 33 33 H 1.09005 * 110.35992 * 86.08085 * 4 2 1 34 34 H 0.97006 * 120.00416 * 180.02562 * 9 8 6 35 35 H 1.09006 * 109.88486 * 239.52066 * 14 5 4 36 36 H 1.09009 * 109.88530 * 118.35719 * 14 5 4 37 37 H 1.09000 * 109.47240 * 48.51656 * 17 15 14 38 38 H 1.09003 * 109.47230 * 168.52278 * 17 15 14 39 39 H 0.97007 * 120.00221 * 359.97438 * 18 17 15 40 40 H 1.08001 * 120.04987 * 359.97438 * 22 21 19 41 41 H 1.07998 * 119.92726 * 180.32362 * 23 22 21 42 42 H 1.08002 * 119.94168 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0853 -0.8072 -1.1999 5 7 3.4271 -1.2434 -0.7727 6 6 4.4646 -1.5660 -1.6064 7 1 5.4132 -1.8753 -1.1931 8 6 4.2967 -1.4957 -2.9825 9 7 3.1403 -1.1196 -3.4860 10 14 5.7121 -1.9350 -4.1197 11 1 5.6605 -3.3848 -4.4370 12 1 5.6007 -1.1492 -5.3748 13 1 7.0002 -1.6201 -3.4512 14 6 3.4674 -1.2738 0.6966 15 6 2.0862 -0.8074 1.2027 16 1 1.4468 -1.6625 1.4217 17 6 2.2349 0.0887 2.4338 18 7 2.6467 -0.7230 3.5817 19 6 2.8400 -0.1428 4.7828 20 8 2.6731 1.0543 4.9134 21 6 3.2556 -0.9609 5.9395 22 6 3.4434 -2.3375 5.7936 23 6 3.8377 -3.0951 6.8747 24 6 4.0357 -2.4962 8.1103 25 9 4.4164 -3.2457 9.1679 26 6 3.8452 -1.1323 8.2637 27 6 3.4563 -0.3621 7.1864 28 17 3.2185 1.3467 7.3793 29 1 -0.3633 0.4525 0.9227 30 1 -0.3633 0.5729 -0.8532 31 1 -0.3633 -1.0253 -0.0695 32 1 1.4519 -1.6710 -1.4016 33 1 2.1560 -0.1729 -2.0835 34 1 3.0228 -1.0708 -4.4477 35 1 4.2426 -0.5992 1.0603 36 1 3.6650 -2.2890 1.0412 37 1 2.9888 0.8515 2.2391 38 1 1.2806 0.5683 2.6516 39 1 2.7795 -1.6783 3.4776 40 1 3.2844 -2.8062 4.8337 41 1 3.9881 -4.1585 6.7612 42 1 4.0012 -0.6713 9.2279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093174239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:03 Heat of formation + Delta-G solvation = -51.198998 kcal Electronic energy + Delta-G solvation = -26535.106498 eV Core-core repulsion = 22455.506755 eV Total energy + Delta-G solvation = -4079.599743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.11171 -41.34097 -39.86760 -39.06810 -37.48472 -36.06944 -34.69918 -32.55181 -32.46098 -31.91563 -30.43420 -27.84335 -26.69283 -25.13595 -24.39983 -23.80073 -21.98265 -21.45766 -20.79945 -19.38707 -18.84866 -18.46494 -17.88871 -17.08368 -16.83732 -16.58757 -16.40345 -16.16124 -15.85358 -15.58547 -15.44657 -14.76103 -14.73619 -14.56488 -14.43482 -14.08128 -13.94770 -13.86178 -13.48461 -13.36257 -12.97580 -12.73393 -12.67876 -12.52219 -12.43319 -12.41425 -12.24832 -11.95469 -11.80255 -11.56474 -11.37755 -11.17219 -10.73149 -10.64101 -10.23425 -10.13380 -9.81442 -8.84999 -7.75364 -5.19303 -0.57436 -0.10101 0.97755 1.47453 1.48814 1.57455 1.63979 2.06730 2.49834 2.50880 3.00374 3.33996 3.46425 3.55249 3.68769 3.80774 3.82626 3.91879 3.98942 4.01307 4.22259 4.41136 4.52367 4.60514 4.65918 4.72622 4.78601 4.84769 4.88731 4.90752 4.93416 5.01554 5.13025 5.18886 5.36773 5.42254 5.44707 5.50305 5.53629 5.75534 5.87486 6.34510 6.49877 7.13597 7.17081 7.81927 8.45088 9.26048 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.002478 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.632876 B =11298.657158 C =12272.951147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 H 0.064 0.936 4 C 0.162 3.838 5 N -0.629 5.629 6 C -0.237 4.237 7 H 0.080 0.920 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.286 1.286 12 H -0.295 1.295 13 H -0.271 1.271 14 C 0.137 3.863 15 C -0.089 4.089 16 H 0.099 0.901 17 C 0.147 3.853 18 N -0.709 5.709 19 C 0.549 3.451 20 O -0.552 6.552 21 C -0.153 4.153 22 C -0.035 4.035 23 C -0.145 4.145 24 C 0.135 3.865 25 F -0.129 7.129 26 C -0.158 4.158 27 C 0.025 3.975 28 Cl -0.037 7.037 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.055 0.945 32 H -0.008 1.008 33 H 0.066 0.934 34 H 0.246 0.754 35 H 0.019 0.981 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.412 0.588 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.590 -3.721 24.296 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.037 3.963 5 N -0.355 5.355 6 C -0.366 4.366 7 H 0.098 0.902 8 C -0.260 4.260 9 N -0.598 5.598 10 Si 0.806 3.194 11 H -0.213 1.213 12 H -0.222 1.222 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.108 4.108 16 H 0.117 0.883 17 C 0.023 3.977 18 N -0.362 5.362 19 C 0.337 3.663 20 O -0.431 6.431 21 C -0.157 4.157 22 C -0.054 4.054 23 C -0.164 4.164 24 C 0.115 3.885 25 F -0.107 7.107 26 C -0.177 4.177 27 C -0.003 4.003 28 Cl -0.008 7.008 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.010 0.990 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.250 0.750 40 H 0.191 0.809 41 H 0.196 0.804 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.655 -2.746 24.219 24.519 hybrid contribution 0.902 -0.450 -0.845 1.315 sum -1.753 -3.196 23.374 23.657 Atomic orbital electron populations 1.21604 0.92812 1.01975 1.02108 1.22433 0.96694 0.98353 0.94660 0.91751 1.21750 0.83765 0.94913 0.95868 1.44807 1.10424 1.79027 1.01222 1.19443 0.91982 1.37168 0.88032 0.90224 1.25599 0.99630 1.02617 0.98151 1.70061 1.24079 1.54963 1.10706 0.85094 0.78886 0.77312 0.78143 1.21268 1.22187 1.19566 1.21541 0.95591 0.97814 0.83899 1.22340 0.96474 0.98639 0.93343 0.88272 1.21203 1.00278 0.92951 0.83264 1.45826 1.69148 1.12804 1.08374 1.18267 0.77616 0.87218 0.83223 1.90869 1.51889 1.15729 1.84654 1.19868 1.07713 0.95234 0.92874 1.21464 0.93100 0.90238 1.00589 1.21521 1.01363 1.03320 0.90181 1.17817 0.97607 0.88366 0.84706 1.91561 1.88186 1.75763 1.55236 1.21081 1.04011 0.92438 1.00198 1.20828 0.99039 0.86884 0.93585 1.98435 1.94541 1.10466 1.97313 0.90788 0.92926 0.92583 0.99050 0.91583 0.94431 0.96261 0.94958 0.92880 0.90424 0.75021 0.80914 0.80376 0.81781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.31 71.98 0.67 -2.85 16 2 C -0.10 -3.51 3.09 -9.40 -0.03 -3.54 16 3 H 0.06 2.33 8.05 -2.38 -0.02 2.31 16 4 C 0.16 7.70 5.36 86.86 0.47 8.17 16 5 N -0.63 -31.38 3.39 -692.00 -2.35 -33.73 16 6 C -0.24 -13.08 10.27 84.03 0.86 -12.22 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 9 N -0.95 -56.06 10.09 21.65 0.22 -55.84 16 10 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.14 5.13 6.75 86.73 0.59 5.72 16 15 C -0.09 -2.60 2.43 -9.60 -0.02 -2.62 16 16 H 0.10 2.53 8.04 -2.39 -0.02 2.51 16 17 C 0.15 3.79 5.02 86.38 0.43 4.22 16 18 N -0.71 -15.11 5.42 -466.16 -2.53 -17.64 16 19 C 0.55 13.45 7.76 86.73 0.67 14.12 16 20 O -0.55 -17.50 13.96 -3.97 -0.06 -17.56 16 21 C -0.15 -2.92 5.88 -20.07 -0.12 -3.04 16 22 C -0.04 -0.42 9.53 22.51 0.21 -0.21 16 23 C -0.15 -1.47 10.01 22.28 0.22 -1.25 16 24 C 0.13 1.79 7.31 22.47 0.16 1.95 16 25 F -0.13 -1.81 17.26 44.97 0.78 -1.04 16 26 C -0.16 -2.38 9.79 22.30 0.22 -2.17 16 27 C 0.02 0.49 6.35 22.59 0.14 0.63 16 28 Cl -0.04 -0.87 26.02 -2.72 -0.07 -0.94 16 29 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.51 8.07 -2.39 -0.02 1.49 16 32 H -0.01 -0.43 7.98 -2.39 -0.02 -0.45 16 33 H 0.07 3.68 5.88 -2.38 -0.01 3.67 16 34 H 0.25 14.17 8.31 -92.70 -0.77 13.39 16 35 H 0.02 0.75 7.68 -2.38 -0.02 0.73 16 36 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 1.61 7.93 -2.39 -0.02 1.59 16 38 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 39 H 0.41 6.43 6.50 -92.70 -0.60 5.83 16 40 H 0.17 1.13 6.40 -2.91 -0.02 1.11 16 41 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -70.69 362.63 3.42 -67.27 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.45 Total: 8.59 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.95 Total: 3.60 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -4.66 Total: -107.21 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.06 Total: -17.56 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.78 Total: -1.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.07 Total: -0.94 kcal Total: -70.69 3.42 -67.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093174239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.068 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds