Wall clock time and date at job start Sat Apr 11 2020 05:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.91560 * 2 1 4 4 C 1.54910 * 111.00168 * 236.09723 * 2 1 3 5 5 N 1.47431 * 104.82889 * 204.91699 * 4 2 1 6 6 C 1.34779 * 125.64566 * 204.09623 * 5 4 2 7 7 O 1.21568 * 119.99996 * 174.74332 * 6 5 4 8 8 C 1.47696 * 119.99796 * 354.74201 * 6 5 4 9 9 C 1.39659 * 120.16064 * 323.68572 * 8 6 5 10 10 C 1.37973 * 119.86318 * 180.02562 * 9 8 6 11 11 Cl 1.73597 * 119.90280 * 180.02562 * 10 9 8 12 12 C 1.38568 * 120.19022 * 359.97438 * 10 9 8 13 13 C 1.38188 * 120.32609 * 0.02562 * 12 10 9 14 14 C 1.38322 * 120.13571 * 359.71928 * 13 12 10 15 15 F 1.35095 * 120.10209 * 180.30326 * 14 13 12 16 16 C 1.47013 * 108.70484 * 24.12728 * 5 4 2 17 17 C 1.54326 * 107.27396 * 358.94291 * 16 5 4 18 18 H 1.09001 * 110.72003 * 96.34636 * 17 16 5 19 19 C 1.53000 * 110.72278 * 219.44234 * 17 16 5 20 20 N 1.46499 * 109.46868 * 293.54749 * 19 17 16 21 21 C 1.36943 * 119.99775 * 180.27533 * 20 19 17 22 22 H 1.08002 * 119.99969 * 359.72376 * 21 20 19 23 23 C 1.38815 * 119.99909 * 179.71972 * 21 20 19 24 24 N 1.31613 * 119.99889 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99637 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47373 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46704 * 120.00275 * 25 23 21 28 28 H 1.48505 * 109.47038 * 239.99998 * 25 23 21 29 29 H 1.09003 * 109.47187 * 296.09512 * 1 2 3 30 30 H 1.08996 * 109.47495 * 56.09942 * 1 2 3 31 31 H 1.09005 * 109.46831 * 176.10240 * 1 2 3 32 32 H 1.08998 * 110.36384 * 86.08031 * 4 2 1 33 33 H 1.08998 * 110.45978 * 323.80065 * 4 2 1 34 34 H 1.07994 * 120.06577 * 0.02698 * 9 8 6 35 35 H 1.07997 * 119.83469 * 180.02562 * 12 10 9 36 36 H 1.08005 * 119.93463 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.88537 * 239.52697 * 16 5 4 38 38 H 1.08998 * 110.01029 * 118.43100 * 16 5 4 39 39 H 1.08997 * 109.47222 * 173.54290 * 19 17 16 40 40 H 1.09003 * 109.46669 * 53.54180 * 19 17 16 41 41 H 0.97000 * 120.00435 * 359.97438 * 20 19 17 42 42 H 0.97001 * 120.00091 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4271 -1.2431 -0.7733 6 6 4.4477 -1.5616 -1.5940 7 8 5.5424 -1.8177 -1.1316 8 6 4.2359 -1.5995 -3.0552 9 6 3.0240 -2.0571 -3.5770 10 6 2.8330 -2.0904 -4.9430 11 17 1.3266 -2.6584 -5.5927 12 6 3.8396 -1.6708 -5.7978 13 6 5.0419 -1.2166 -5.2900 14 6 5.2459 -1.1725 -3.9227 15 9 6.4193 -0.7226 -3.4269 16 6 3.4675 -1.2741 0.6960 17 6 2.0862 -0.8079 1.2023 18 1 1.4479 -1.6632 1.4240 19 6 2.2350 0.0876 2.4338 20 7 2.7616 -0.7012 3.5504 21 6 2.9740 -0.1091 4.7668 22 1 2.7575 0.9403 4.9017 23 6 3.4675 -0.8579 5.8264 24 7 3.7317 -2.1367 5.6618 25 14 3.7579 -0.0501 7.4855 26 1 3.3853 1.3853 7.4092 27 1 2.9265 -0.7228 8.5158 28 1 5.1923 -0.1709 7.8505 29 1 -0.3634 0.4520 0.9229 30 1 -0.3634 0.5731 -0.8529 31 1 -0.3633 -1.0254 -0.0699 32 1 2.1559 -0.1720 -2.0836 33 1 1.4524 -1.6704 -1.4043 34 1 2.2379 -2.3842 -2.9126 35 1 3.6838 -1.6989 -6.8661 36 1 5.8223 -0.8914 -5.9621 37 1 4.2426 -0.5997 1.0599 38 1 3.6662 -2.2883 1.0423 39 1 1.2619 0.4969 2.7051 40 1 2.9224 0.9031 2.2091 41 1 2.9557 -1.6438 3.4293 42 1 4.0769 -2.6599 6.4021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106395588.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:09 Heat of formation + Delta-G solvation = -46.907685 kcal Electronic energy + Delta-G solvation = -26947.108062 eV Core-core repulsion = 22867.694404 eV Total energy + Delta-G solvation = -4079.413658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.23714 -40.61479 -39.14602 -37.84996 -36.84278 -34.74009 -33.12570 -31.98851 -31.36003 -30.74677 -29.06811 -26.64437 -25.78578 -24.31896 -23.25733 -22.86581 -21.19375 -20.31230 -19.72643 -18.00817 -17.63261 -17.11304 -17.05713 -16.45662 -16.05218 -15.82876 -15.18592 -14.88738 -14.58748 -14.28082 -14.05630 -13.89108 -13.70685 -13.57961 -13.29633 -13.22455 -12.87045 -12.80798 -12.55982 -12.15578 -12.01228 -11.94961 -11.70122 -11.50199 -11.39956 -11.10515 -10.89514 -10.67216 -10.46865 -10.41205 -10.06191 -9.97603 -9.72853 -9.65728 -9.09093 -8.88289 -8.63738 -6.92903 -5.75841 -3.05133 0.20619 0.46567 1.55170 2.42005 2.76651 3.10444 3.44532 3.49907 3.52366 3.67591 3.98319 4.12080 4.37022 4.45202 4.56340 4.57995 4.75900 4.80231 4.96616 5.13368 5.23416 5.28127 5.40409 5.41720 5.45082 5.45824 5.51169 5.58361 5.67243 5.76353 5.95048 6.00045 6.06928 6.10955 6.17056 6.28550 6.35884 6.38417 6.67531 6.81182 7.41019 7.70927 8.01495 8.42413 9.53907 10.10239 10.44561 11.46941 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002604 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.909819 B =10749.548451 C =11816.587814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.098 3.902 5 N -0.609 5.609 6 C 0.569 3.431 7 O -0.516 6.516 8 C -0.147 4.147 9 C -0.053 4.053 10 C -0.056 4.056 11 Cl -0.056 7.056 12 C -0.061 4.061 13 C -0.149 4.149 14 C 0.158 3.842 15 F -0.113 7.113 16 C 0.116 3.884 17 C -0.100 4.100 18 H 0.088 0.912 19 C 0.165 3.835 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 1.554 -28.074 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.024 4.024 5 N -0.342 5.342 6 C 0.356 3.644 7 O -0.392 6.392 8 C -0.151 4.151 9 C -0.072 4.072 10 C -0.083 4.083 11 Cl -0.027 7.027 12 C -0.080 4.080 13 C -0.168 4.168 14 C 0.138 3.862 15 F -0.091 7.091 16 C -0.005 4.005 17 C -0.119 4.119 18 H 0.106 0.894 19 C 0.037 3.963 20 N -0.377 5.377 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.170 0.830 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.414 1.486 -27.750 28.312 hybrid contribution 0.316 0.037 0.930 0.983 sum -5.097 1.523 -26.820 27.342 Atomic orbital electron populations 1.21697 0.93471 1.02160 1.02371 1.22377 0.96351 0.99572 0.93512 0.89366 1.22646 0.83232 0.98250 0.98314 1.48411 1.11905 1.65954 1.07929 1.17495 0.83714 0.78394 0.84776 1.90883 1.23274 1.48506 1.76516 1.20005 0.94722 1.06151 0.94246 1.21305 0.96018 0.96072 0.93834 1.20790 0.89759 1.04540 0.93196 1.98400 1.30555 1.87560 1.86140 1.21074 0.90902 0.95389 1.00628 1.21107 0.99139 1.03457 0.93058 1.17736 0.81565 0.95500 0.91428 1.91617 1.43886 1.85500 1.88134 1.22121 0.98742 1.02785 0.76862 1.22544 0.94884 0.99323 0.95158 0.89413 1.20633 0.96732 0.92894 0.86046 1.42366 1.77905 1.09984 1.07478 1.19246 1.36104 0.94125 0.87688 0.91129 1.24748 1.02055 0.95811 0.98295 1.69664 1.50847 1.06043 1.31441 0.86125 0.77502 0.78302 0.84298 1.20566 1.21877 1.21843 0.91449 0.92570 0.92332 0.90637 0.90998 0.83020 0.83392 0.82941 0.90209 0.90796 0.95724 0.96117 0.78226 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.31 37.16 0.35 -0.93 16 2 C -0.10 -1.10 3.09 -88.47 -0.27 -1.37 16 3 H 0.09 1.01 8.05 -51.93 -0.42 0.59 16 4 C 0.10 1.01 4.68 -2.52 -0.01 1.00 16 5 N -0.61 -8.60 3.33 -171.69 -0.57 -9.17 16 6 C 0.57 8.86 7.39 -12.40 -0.09 8.77 16 7 O -0.52 -10.30 16.47 5.31 0.09 -10.21 16 8 C -0.15 -1.74 5.42 -104.91 -0.57 -2.31 16 9 C -0.05 -0.48 7.95 -39.15 -0.31 -0.79 16 10 C -0.06 -0.42 6.31 -39.56 -0.25 -0.67 16 11 Cl -0.06 -0.38 28.95 -51.86 -1.50 -1.89 16 12 C -0.06 -0.38 9.82 -39.48 -0.39 -0.77 16 13 C -0.15 -1.09 10.01 -39.57 -0.40 -1.49 16 14 C 0.16 1.77 7.24 -38.96 -0.28 1.48 16 15 F -0.11 -1.56 16.15 2.25 0.04 -1.52 16 16 C 0.12 1.93 6.16 -3.07 -0.02 1.91 16 17 C -0.10 -1.50 2.48 -88.78 -0.22 -1.72 16 18 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 19 C 0.16 3.15 5.58 -4.04 -0.02 3.13 16 20 N -0.73 -18.25 5.45 -59.91 -0.33 -18.58 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.50 8.08 -51.93 -0.42 0.09 16 32 H 0.08 0.66 7.26 -51.93 -0.38 0.28 16 33 H 0.07 0.62 6.75 -51.93 -0.35 0.26 16 34 H 0.15 1.22 5.73 -52.49 -0.30 0.92 16 35 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 38 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 41 H 0.38 10.08 7.52 -40.82 -0.31 9.78 16 42 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -33.64 367.28 -9.27 -42.91 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.49 Total: 4.11 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.73 Total: -1.09 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.17 Total: -55.40 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.64 -9.27 -42.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106395588.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.996 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds