Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.78437 * 2 1 4 4 C 1.54325 * 110.72304 * 236.75391 * 2 1 3 5 5 N 1.47018 * 107.40412 * 219.52316 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21574 * 120.00152 * 180.02562 * 6 5 4 8 8 C 1.47622 * 119.99811 * 0.02967 * 6 5 4 9 9 C 1.39884 * 120.17717 * 89.72157 * 8 6 5 10 10 F 1.35100 * 120.10370 * 359.97438 * 9 8 6 11 11 C 1.38248 * 119.78989 * 179.71770 * 9 8 6 12 12 C 1.38283 * 120.15284 * 0.55932 * 11 9 8 13 13 C 1.38348 * 120.36609 * 359.71569 * 12 11 9 14 14 C 1.38074 * 120.19896 * 0.02562 * 13 12 11 15 15 Cl 1.73604 * 120.07870 * 180.02562 * 14 13 12 16 16 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 17 17 C 1.54914 * 104.82992 * 24.12623 * 16 5 4 18 18 H 1.09000 * 111.00339 * 81.07133 * 17 16 5 19 19 C 1.52998 * 111.00210 * 204.88127 * 17 16 5 20 20 N 1.46504 * 109.47182 * 293.54820 * 19 17 16 21 21 C 1.36932 * 120.00347 * 180.02562 * 20 19 17 22 22 H 1.08003 * 120.00088 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00448 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00354 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99945 * 359.97438 * 23 21 20 26 26 H 1.48507 * 109.47304 * 89.99427 * 25 23 21 27 27 H 1.48498 * 109.47402 * 210.00126 * 25 23 21 28 28 H 1.48506 * 109.47002 * 329.99868 * 25 23 21 29 29 H 1.08999 * 109.47083 * 181.78943 * 1 2 3 30 30 H 1.09002 * 109.47293 * 301.78952 * 1 2 3 31 31 H 1.09000 * 109.47062 * 61.79046 * 1 2 3 32 32 H 1.09002 * 109.88192 * 100.02756 * 4 2 1 33 33 H 1.09000 * 109.88128 * 339.01609 * 4 2 1 34 34 H 1.07997 * 119.92108 * 180.24973 * 11 9 8 35 35 H 1.08006 * 119.81604 * 179.69626 * 12 11 9 36 36 H 1.08000 * 119.90009 * 180.02562 * 13 12 11 37 37 H 1.08999 * 110.36956 * 142.96999 * 16 5 4 38 38 H 1.09003 * 110.36599 * 265.28903 * 16 5 4 39 39 H 1.08999 * 109.47428 * 53.54216 * 19 17 16 40 40 H 1.08994 * 109.47354 * 173.55019 * 19 17 16 41 41 H 0.97004 * 119.99898 * 359.97438 * 20 19 17 42 42 H 0.96997 * 120.00127 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2438 -1.5535 -0.7414 6 6 3.9877 -2.3885 -1.4937 7 8 4.9353 -2.9694 -1.0009 8 6 3.6521 -2.5976 -2.9159 9 6 4.2107 -1.7737 -3.8987 10 9 5.0597 -0.7825 -3.5497 11 6 3.8954 -1.9805 -5.2288 12 6 3.0216 -2.9908 -5.5866 13 6 2.4610 -3.8057 -4.6194 14 6 2.7697 -3.6159 -3.2871 15 17 2.0649 -4.6408 -2.0760 16 6 3.4656 -1.2541 0.6849 17 6 2.0831 -0.7972 1.2139 18 1 1.4480 -1.6542 1.4382 19 6 2.2359 0.1043 2.4406 20 7 2.7855 -0.6741 3.5533 21 6 3.0102 -0.0742 4.7635 22 1 2.7826 0.9730 4.8977 23 6 3.5305 -0.8118 5.8181 24 7 3.7470 -0.2350 6.9812 25 14 3.9236 -2.6232 5.5864 26 1 5.3252 -2.7698 5.1180 27 1 3.7565 -3.3353 6.8788 28 1 3.0014 -3.2048 4.5781 29 1 -0.3633 -1.0272 0.0321 30 1 -0.3634 0.5414 0.8735 31 1 -0.3633 0.4858 -0.9056 32 1 2.3741 -0.1026 -1.9977 33 1 1.3121 -1.4741 -1.5791 34 1 4.3286 -1.3482 -5.9897 35 1 2.7753 -3.1443 -6.6270 36 1 1.7798 -4.5928 -4.9073 37 1 3.7975 -2.1479 1.2131 38 1 4.1973 -0.4537 0.7952 39 1 2.9105 0.9273 2.2049 40 1 1.2612 0.5026 2.7224 41 1 2.9896 -1.6148 3.4330 42 1 4.1102 -0.7506 7.7181 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106911652.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = -44.123591 kcal Electronic energy + Delta-G solvation = -27428.577686 eV Core-core repulsion = 23349.284755 eV Total energy + Delta-G solvation = -4079.292931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.42341 -40.57710 -39.23758 -37.84422 -36.93309 -34.87219 -33.07652 -31.84959 -31.50984 -31.05355 -29.48144 -26.61555 -26.02587 -24.18290 -23.35307 -22.71377 -21.13783 -20.22215 -19.95390 -18.34909 -17.74340 -17.41325 -17.23609 -16.53964 -15.92980 -15.85443 -15.38686 -14.98824 -14.61414 -14.42927 -14.17852 -14.00256 -13.84922 -13.66508 -13.32883 -13.06967 -12.74698 -12.70142 -12.46460 -12.36780 -12.19944 -12.05704 -11.86964 -11.51817 -11.48635 -11.41932 -10.95131 -10.69519 -10.56698 -10.37311 -10.16810 -10.07426 -9.57198 -9.52130 -9.30175 -8.88788 -8.72636 -7.23014 -5.75501 -3.11419 0.27625 0.41926 1.51313 2.30709 2.66242 2.87560 3.41292 3.45169 3.49577 3.60212 3.97582 4.18938 4.35979 4.40323 4.53174 4.59237 4.62010 4.72833 4.81924 5.15006 5.18294 5.32186 5.34536 5.37656 5.38922 5.40380 5.54378 5.56855 5.62415 5.66983 5.73775 5.88775 5.99021 6.03882 6.08596 6.10732 6.16447 6.30790 6.59577 6.70978 7.33518 7.91155 7.99542 8.43300 9.21870 9.94512 10.13430 11.42789 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015539 B = 0.003201 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.463641 B = 8745.269710 C = 9052.125585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.091 0.909 4 C 0.104 3.896 5 N -0.604 5.604 6 C 0.576 3.424 7 O -0.516 6.516 8 C -0.144 4.144 9 C 0.144 3.856 10 F -0.121 7.121 11 C -0.150 4.150 12 C -0.065 4.065 13 C -0.122 4.122 14 C 0.017 3.983 15 Cl -0.037 7.037 16 C 0.113 3.887 17 C -0.105 4.105 18 H 0.086 0.914 19 C 0.171 3.829 20 N -0.756 5.756 21 C -0.245 4.245 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.881 3.119 26 H -0.282 1.282 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.361 0.639 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -4.241 -31.060 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.109 0.891 4 C -0.019 4.019 5 N -0.337 5.337 6 C 0.362 3.638 7 O -0.391 6.391 8 C -0.149 4.149 9 C 0.124 3.876 10 F -0.099 7.099 11 C -0.169 4.169 12 C -0.083 4.083 13 C -0.140 4.140 14 C -0.011 4.011 15 Cl -0.007 7.007 16 C -0.008 4.008 17 C -0.125 4.125 18 H 0.104 0.896 19 C 0.043 3.957 20 N -0.402 5.402 21 C -0.375 4.375 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.711 3.289 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.194 0.806 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.501 -4.478 -30.507 31.512 hybrid contribution 0.454 -1.229 0.104 1.314 sum -6.047 -5.707 -30.403 31.520 Atomic orbital electron populations 1.21741 0.93479 1.02269 1.02243 1.22244 0.96521 0.99587 0.93094 0.89076 1.22183 0.87520 0.94618 0.97601 1.48423 1.29853 1.43299 1.12083 1.17367 0.82545 0.79299 0.84601 1.90864 1.27993 1.47679 1.72568 1.19841 1.01668 0.98691 0.94735 1.17478 0.91027 0.86815 0.92307 1.91591 1.67443 1.58104 1.92806 1.21237 1.00805 1.00819 0.94037 1.21120 0.94154 0.92848 1.00181 1.21114 1.01672 1.01298 0.89959 1.20721 0.95948 0.93253 0.91142 1.98443 1.81942 1.65621 1.54730 1.22428 0.98005 1.01789 0.78594 1.22778 0.95198 0.99393 0.95098 0.89573 1.20553 0.97192 0.92758 0.85178 1.42722 1.78482 1.09133 1.09881 1.19030 1.35691 0.96176 0.86560 0.89153 1.24656 1.01118 0.97544 0.95647 1.69699 1.50720 1.35617 1.02130 0.86598 0.78602 0.86746 0.76908 1.20868 1.21671 1.20360 0.92427 0.91387 0.92541 0.91614 0.91279 0.83314 0.83403 0.83491 0.90063 0.90290 0.95137 0.94840 0.80628 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.14 37.15 0.34 -0.96 16 2 C -0.10 -1.05 3.03 -88.65 -0.27 -1.32 16 3 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 4 C 0.10 1.14 6.06 -3.07 -0.02 1.12 16 5 N -0.60 -8.69 3.33 -171.71 -0.57 -9.26 16 6 C 0.58 9.07 5.98 -12.43 -0.07 9.00 16 7 O -0.52 -10.21 17.36 5.30 0.09 -10.12 16 8 C -0.14 -1.76 4.82 -104.88 -0.51 -2.27 16 9 C 0.14 1.51 7.29 -38.96 -0.28 1.23 16 10 F -0.12 -1.49 16.83 2.25 0.04 -1.45 16 11 C -0.15 -1.00 10.01 -39.56 -0.40 -1.39 16 12 C -0.06 -0.32 10.03 -39.52 -0.40 -0.72 16 13 C -0.12 -0.80 9.81 -39.60 -0.39 -1.19 16 14 C 0.02 0.17 6.35 -39.07 -0.25 -0.08 16 15 Cl -0.04 -0.41 28.04 -51.86 -1.45 -1.87 16 16 C 0.11 1.83 6.08 -2.53 -0.02 1.81 16 17 C -0.11 -1.55 2.56 -88.33 -0.23 -1.78 16 18 H 0.09 1.30 8.04 -51.93 -0.42 0.89 16 19 C 0.17 3.15 5.72 -4.04 -0.02 3.12 16 20 N -0.76 -17.94 5.26 -59.91 -0.31 -18.25 16 21 C -0.24 -6.97 10.47 -15.06 -0.16 -7.12 16 22 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.71 13.97 55.49 0.78 -28.93 16 25 Si 0.88 22.79 27.73 -169.99 -4.71 18.07 16 26 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 28 H -0.28 -6.78 6.52 56.52 0.37 -6.42 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 34 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.15 0.23 8.06 -52.48 -0.42 -0.19 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 38 H 0.08 1.32 8.00 -51.93 -0.42 0.91 16 39 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.36 8.52 5.40 -40.82 -0.22 8.30 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 370.79 15.07 5.59 5.59 Total: -1.00 -35.22 370.79 -9.01 -44.23 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.69 Total: 2.44 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -2.76 Total: -0.45 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.11 Total: -56.44 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.07 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.45 Total: -1.87 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.22 -9.01 -44.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106911652.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.106 kcal (2) G-P(sol) polarization free energy of solvation -35.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds