Wall clock time and date at job start Sat Apr 11 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.29179 * 2 1 4 4 C 1.54001 * 110.32772 * 237.85961 * 2 1 3 5 5 N 1.47477 * 107.08442 * 242.41441 * 4 2 1 6 6 C 1.34781 * 127.03274 * 154.51724 * 5 4 2 7 7 O 1.21575 * 120.00202 * 185.26897 * 6 5 4 8 8 C 1.47656 * 119.99618 * 5.27346 * 6 5 4 9 9 C 1.39699 * 120.13005 * 36.74320 * 8 6 5 10 10 C 1.37779 * 119.88952 * 180.30020 * 9 8 6 11 11 C 1.38720 * 120.15620 * 359.43515 * 10 9 8 12 12 F 1.35099 * 119.86685 * 180.28230 * 11 10 9 13 13 C 1.38559 * 120.25985 * 0.56553 * 11 10 9 14 14 C 1.38029 * 120.10640 * 359.71628 * 13 11 10 15 15 Cl 1.73606 * 120.07783 * 179.97438 * 14 13 11 16 16 C 1.48115 * 105.93733 * 334.78223 * 5 4 2 17 17 C 1.54592 * 103.42158 * 39.02036 * 16 5 4 18 18 H 1.09007 * 110.57884 * 81.17198 * 17 16 5 19 19 C 1.52995 * 110.99241 * 204.37706 * 17 16 5 20 20 N 1.46507 * 109.47159 * 288.65572 * 19 17 16 21 21 C 1.36938 * 120.00198 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99849 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99847 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00343 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99942 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46798 * 90.00563 * 25 23 21 27 27 H 1.48493 * 109.47212 * 210.00233 * 25 23 21 28 28 H 1.48503 * 109.47002 * 330.00373 * 25 23 21 29 29 H 1.08996 * 109.47429 * 180.68238 * 1 2 3 30 30 H 1.08999 * 109.47063 * 300.68565 * 1 2 3 31 31 H 1.09004 * 109.46898 * 60.68197 * 1 2 3 32 32 H 1.09007 * 109.91089 * 123.05299 * 4 2 1 33 33 H 1.08997 * 110.07180 * 1.87344 * 4 2 1 34 34 H 1.07997 * 120.05324 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.91801 * 179.71717 * 10 9 8 36 36 H 1.08007 * 119.94275 * 179.69907 * 13 11 10 37 37 H 1.08995 * 110.66554 * 157.50731 * 16 5 4 38 38 H 1.09001 * 110.66145 * 280.62513 * 16 5 4 39 39 H 1.09003 * 109.47334 * 48.65416 * 19 17 16 40 40 H 1.09001 * 109.47867 * 168.65326 * 19 17 16 41 41 H 0.96997 * 119.99313 * 359.97438 * 20 19 17 42 42 H 0.97000 * 119.99851 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0224 0.0000 4 6 2.0650 -0.7683 -1.2228 5 7 2.8277 -1.9217 -0.7101 6 6 3.0613 -3.0874 -1.3451 7 8 3.6277 -3.9930 -0.7645 8 6 2.6295 -3.2643 -2.7460 9 6 2.7048 -2.1962 -3.6432 10 6 2.2947 -2.3651 -4.9477 11 6 1.8184 -3.5961 -5.3747 12 9 1.4232 -3.7567 -6.6565 13 6 1.7410 -4.6598 -4.4901 14 6 2.1435 -4.5010 -3.1794 15 17 2.0455 -5.8341 -2.0716 16 6 3.2788 -1.5398 0.6480 17 6 2.0671 -0.7735 1.2264 18 1 1.3173 -1.4698 1.6021 19 6 2.5053 0.1939 2.3277 20 7 2.8961 -0.5658 3.5179 21 6 3.3276 0.0919 4.6388 22 1 3.3803 1.1706 4.6453 23 6 3.6974 -0.6279 5.7666 24 7 3.6338 -1.9425 5.7585 25 14 4.2868 0.2692 7.2955 26 1 3.1260 0.5687 8.1719 27 1 5.2535 -0.5861 8.0295 28 1 4.9492 1.5382 6.9003 29 1 -0.3634 -1.0275 0.0122 30 1 -0.3633 0.5244 0.8838 31 1 -0.3633 0.5032 -0.8961 32 1 2.7182 -0.1227 -1.8101 33 1 1.2355 -1.1156 -1.8386 34 1 3.0797 -1.2385 -3.3138 35 1 2.3484 -1.5384 -5.6406 36 1 1.3648 -5.6146 -4.8268 37 1 3.4934 -2.4258 1.2454 38 1 4.1523 -0.8899 0.5945 39 1 3.3532 0.7827 1.9779 40 1 1.6788 0.8595 2.5767 41 1 2.8492 -1.5346 3.5118 42 1 3.8925 -2.4455 6.5465 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106942575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:32 Heat of formation + Delta-G solvation = -42.417962 kcal Electronic energy + Delta-G solvation = -26856.864023 eV Core-core repulsion = 22777.645054 eV Total energy + Delta-G solvation = -4079.218969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.47660 -40.64903 -39.06228 -37.67420 -36.72058 -34.70066 -32.99464 -31.69293 -31.39609 -31.11249 -29.01196 -26.61701 -25.69192 -24.03029 -23.50592 -22.88845 -21.24692 -19.99868 -19.95823 -18.26427 -17.74078 -17.12167 -16.94199 -16.20288 -15.88041 -15.84365 -15.20804 -14.78584 -14.50968 -14.46800 -14.25869 -13.76605 -13.69740 -13.65605 -13.33268 -13.19483 -12.93683 -12.84791 -12.37403 -12.16642 -11.97474 -11.76662 -11.66327 -11.33754 -11.22717 -11.12300 -10.86085 -10.58622 -10.50134 -10.38324 -10.03240 -9.89433 -9.66928 -9.53090 -9.18369 -8.87985 -8.65015 -6.92477 -5.75028 -3.04723 0.19841 0.51323 1.70603 2.44015 2.79474 3.15649 3.44367 3.49136 3.51414 3.64117 4.07273 4.18298 4.33966 4.50200 4.56828 4.63546 4.76951 4.80335 4.88623 5.18828 5.27179 5.28088 5.35516 5.45320 5.48125 5.52304 5.55634 5.58239 5.73488 5.76865 5.93746 6.02889 6.08202 6.11780 6.16069 6.17457 6.38546 6.44665 6.69689 6.82159 7.48636 7.70143 8.06800 8.42994 9.54266 10.11288 10.45439 11.47485 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.002579 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.007321 B =10855.400983 C =11786.337695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.101 3.899 5 N -0.614 5.614 6 C 0.571 3.429 7 O -0.510 6.510 8 C -0.127 4.127 9 C -0.049 4.049 10 C -0.156 4.156 11 C 0.132 3.868 12 F -0.129 7.129 13 C -0.155 4.155 14 C 0.035 3.965 15 Cl -0.022 7.022 16 C 0.116 3.884 17 C -0.102 4.102 18 H 0.084 0.916 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.021 0.979 40 H 0.023 0.977 41 H 0.384 0.616 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -0.002 -26.038 26.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.023 4.023 5 N -0.348 5.348 6 C 0.359 3.641 7 O -0.385 6.385 8 C -0.131 4.131 9 C -0.068 4.068 10 C -0.175 4.175 11 C 0.112 3.888 12 F -0.107 7.107 13 C -0.175 4.175 14 C 0.007 3.993 15 Cl 0.007 6.993 16 C -0.005 4.005 17 C -0.122 4.122 18 H 0.103 0.897 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.218 0.782 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.092 -0.597 -25.593 26.315 hybrid contribution 0.188 0.034 0.650 0.677 sum -5.903 -0.564 -24.944 25.639 Atomic orbital electron populations 1.21837 0.94105 1.02026 1.01946 1.22100 0.96433 0.99732 0.93694 0.89268 1.22395 0.95352 0.87413 0.97104 1.48718 1.53345 1.14274 1.18456 1.17523 0.80185 0.81410 0.85031 1.90890 1.41708 1.39252 1.66644 1.19916 1.04248 0.93292 0.95615 1.21327 0.95339 0.98333 0.91772 1.21187 1.02215 0.96806 0.97285 1.17659 0.97915 0.94206 0.79041 1.91551 1.88116 1.96120 1.34950 1.20954 1.04649 1.00325 0.91569 1.20682 0.97995 0.89554 0.91068 1.98455 1.96065 1.43648 1.61100 1.22554 0.96893 1.00305 0.80795 1.22522 0.97113 0.97869 0.94679 0.89741 1.20618 0.96576 0.92695 0.86352 1.42378 1.79306 1.05964 1.10094 1.19191 1.36125 0.91233 0.90738 0.91195 1.24753 1.02350 0.95481 0.98309 1.69663 1.54292 1.04505 1.29449 0.86202 0.78168 0.78460 0.83412 1.21746 1.21776 1.20777 0.92623 0.91759 0.92756 0.91439 0.90723 0.83177 0.83371 0.82987 0.89015 0.90446 0.96096 0.95895 0.78178 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.90 37.16 0.33 -1.05 16 2 C -0.10 -1.08 3.17 -89.24 -0.28 -1.36 16 3 H 0.09 0.88 7.86 -51.93 -0.41 0.47 16 4 C 0.10 0.96 4.94 -2.99 -0.01 0.95 16 5 N -0.61 -8.13 3.29 -171.17 -0.56 -8.70 16 6 C 0.57 8.32 7.25 -12.41 -0.09 8.23 16 7 O -0.51 -9.41 15.32 5.30 0.08 -9.33 16 8 C -0.13 -1.43 5.44 -104.94 -0.57 -2.00 16 9 C -0.05 -0.39 8.21 -39.20 -0.32 -0.71 16 10 C -0.16 -1.05 10.01 -39.57 -0.40 -1.45 16 11 C 0.13 1.05 7.30 -39.28 -0.29 0.76 16 12 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 13 C -0.16 -1.35 9.79 -39.54 -0.39 -1.74 16 14 C 0.04 0.39 6.33 -39.09 -0.25 0.14 16 15 Cl -0.02 -0.28 26.71 -51.86 -1.39 -1.67 16 16 C 0.12 1.81 6.46 -2.32 -0.01 1.80 16 17 C -0.10 -1.54 2.60 -88.93 -0.23 -1.77 16 18 H 0.08 1.40 7.86 -51.93 -0.41 0.99 16 19 C 0.17 3.10 5.59 -4.04 -0.02 3.08 16 20 N -0.73 -18.15 5.52 -59.91 -0.33 -18.48 16 21 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.64 16 25 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.49 7.06 -51.92 -0.37 0.13 16 33 H 0.07 0.62 6.79 -51.93 -0.35 0.27 16 34 H 0.15 0.93 5.90 -52.49 -0.31 0.62 16 35 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.09 1.72 7.81 -51.93 -0.41 1.32 16 38 H 0.08 1.20 7.95 -51.93 -0.41 0.78 16 39 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.38 10.17 7.67 -40.82 -0.31 9.86 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -32.81 365.23 -9.21 -42.02 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.47 Total: 4.35 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -2.78 Total: -2.42 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.17 Total: -54.82 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.39 Total: -1.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.81 -9.21 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106942575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.399 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds