Wall clock time and date at job start Sat Apr 11 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34742 * 117.00002 * 2 1 4 4 O 1.21485 * 120.00412 * 359.97438 * 3 2 1 5 5 C 1.47594 * 119.99753 * 179.97438 * 3 2 1 6 6 N 1.33115 * 120.16064 * 354.75243 * 5 3 2 7 7 C 1.31780 * 119.99609 * 179.97438 * 6 5 3 8 8 Cl 1.73593 * 119.84588 * 179.97438 * 7 6 5 9 9 C 1.38997 * 120.30747 * 359.97438 * 7 6 5 10 10 N 1.31998 * 120.31712 * 0.25689 * 9 7 6 11 11 C 1.32843 * 120.00215 * 359.49006 * 10 9 7 12 12 N 1.38289 * 120.15211 * 180.25696 * 11 10 9 13 13 C 1.46951 * 111.00483 * 68.77565 * 12 11 10 14 14 C 1.53051 * 109.36614 * 176.81314 * 13 12 11 15 15 N 1.46960 * 109.36628 * 58.40146 * 14 13 12 16 16 C 1.46892 * 110.99919 * 176.81145 * 15 14 13 17 17 C 1.50699 * 109.47200 * 59.37542 * 16 15 14 18 18 H 1.08002 * 120.00016 * 355.30349 * 17 16 15 19 19 C 1.37879 * 119.99998 * 175.31000 * 17 16 15 20 20 N 1.31517 * 119.99761 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00261 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46992 * 90.00018 * 21 19 17 23 23 H 1.48493 * 109.47591 * 210.00431 * 21 19 17 24 24 H 1.48500 * 109.47148 * 330.00704 * 21 19 17 25 25 C 1.46958 * 110.87708 * 300.67898 * 15 14 13 26 26 C 1.46966 * 110.99597 * 304.97154 * 12 11 10 27 27 H 1.09008 * 109.47155 * 60.00100 * 1 2 3 28 28 H 1.09001 * 109.47519 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47400 * 300.00239 * 1 2 3 30 30 H 1.08001 * 119.84270 * 179.97438 * 9 7 6 31 31 H 1.09008 * 109.48774 * 296.78121 * 13 12 11 32 32 H 1.08996 * 109.49142 * 56.84148 * 13 12 11 33 33 H 1.08995 * 109.48724 * 298.43298 * 14 13 12 34 34 H 1.08996 * 109.48766 * 178.36700 * 14 13 12 35 35 H 1.09007 * 109.46938 * 179.37223 * 16 15 14 36 36 H 1.09000 * 109.47529 * 299.37034 * 16 15 14 37 37 H 0.97006 * 119.99732 * 179.97438 * 20 19 17 38 38 H 1.08995 * 109.49265 * 299.35084 * 25 15 14 39 39 H 1.09003 * 109.48845 * 179.28362 * 25 15 14 40 40 H 1.08996 * 109.49237 * 303.15769 * 26 12 11 41 41 H 1.09001 * 109.48780 * 63.20613 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4021 2.2195 -0.0005 5 6 3.5376 1.2777 0.0006 6 7 4.2654 0.1682 0.1064 7 6 5.5812 0.2408 0.1060 8 17 6.5264 -1.2085 0.2448 9 6 6.2156 1.4725 -0.0050 10 7 5.5060 2.5809 -0.1060 11 6 4.1789 2.5217 -0.1120 12 7 3.4324 3.6805 -0.2230 13 6 3.5770 4.2743 -1.5594 14 6 2.6761 5.5069 -1.6673 15 7 3.0442 6.4725 -0.6225 16 6 2.2513 7.7034 -0.7403 17 6 0.7867 7.3714 -0.6147 18 1 0.4711 6.3414 -0.5386 19 6 -0.1504 8.3827 -0.5969 20 7 -1.4286 8.0929 -0.4877 21 14 0.3955 10.1643 -0.7279 22 1 0.4371 10.5655 -2.1570 23 1 -0.5643 11.0311 0.0018 24 1 1.7478 10.3127 -0.1326 25 6 2.8995 5.8787 0.7140 26 6 3.8005 4.6462 0.8220 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 7.2944 1.5234 -0.0041 31 1 4.6150 4.5676 -1.7166 32 1 3.2867 3.5444 -2.3150 33 1 1.6357 5.2093 -1.5372 34 1 2.8036 5.9657 -2.6477 35 1 2.5360 8.3963 0.0516 36 1 2.4375 8.1642 -1.7105 37 1 -2.0878 8.8044 -0.4749 38 1 1.8616 5.5854 0.8712 39 1 3.1900 6.6087 1.4696 40 1 3.6730 4.1873 1.8024 41 1 4.8411 4.9435 0.6921 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:11 Heat of formation + Delta-G solvation = 5.789691 kcal Electronic energy + Delta-G solvation = -27835.220324 eV Core-core repulsion = 23778.011757 eV Total energy + Delta-G solvation = -4057.208567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.92629 -39.99710 -38.92173 -37.24287 -36.41762 -35.68169 -34.47098 -32.44807 -31.14351 -30.52822 -28.47632 -27.78405 -25.97307 -25.46948 -23.41058 -23.15598 -21.80741 -21.37734 -19.41513 -18.73367 -18.12995 -17.53627 -16.79166 -16.70626 -16.55147 -16.04830 -15.59923 -15.08267 -14.55350 -14.36538 -14.32677 -14.18513 -13.65663 -13.41670 -13.23015 -12.68324 -12.52246 -12.35665 -12.24214 -12.15267 -12.13912 -11.87338 -11.55477 -11.34040 -11.05250 -10.82333 -10.75374 -10.74160 -10.61312 -10.37133 -10.26567 -9.96999 -9.78923 -9.46689 -9.44892 -8.58039 -8.51970 -7.23356 -6.07721 -4.07872 -0.21381 0.37103 1.15809 2.23095 2.35928 3.15493 3.24739 3.28326 3.36082 3.39015 3.62092 3.79325 3.98643 4.40727 4.58451 4.81207 4.88444 5.07056 5.10607 5.20325 5.24241 5.38792 5.42919 5.53508 5.60082 5.78430 5.84362 5.95941 6.12836 6.24235 6.39430 6.49482 6.71326 6.80680 6.86286 6.97739 7.02303 7.05602 7.11197 7.55872 7.73417 8.01509 8.03875 8.46981 8.97467 9.54404 11.05053 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.003129 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.002158 B = 8945.543938 C =10226.417802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.346 6.346 3 C 0.512 3.488 4 O -0.428 6.428 5 C 0.086 3.914 6 N -0.379 5.379 7 C 0.105 3.895 8 Cl -0.006 7.006 9 C 0.121 3.879 10 N -0.450 5.450 11 C 0.325 3.675 12 N -0.468 5.468 13 C 0.069 3.931 14 C 0.064 3.936 15 N -0.536 5.536 16 C 0.153 3.847 17 C -0.551 4.551 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.064 3.936 26 C 0.067 3.933 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.186 0.814 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.031 0.969 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.381 -18.063 1.173 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.262 6.262 3 C 0.350 3.650 4 O -0.308 6.308 5 C -0.056 4.056 6 N -0.099 5.099 7 C -0.066 4.066 8 Cl 0.023 6.977 9 C -0.044 4.044 10 N -0.167 5.167 11 C 0.095 3.905 12 N -0.193 5.193 13 C -0.056 4.056 14 C -0.065 4.065 15 N -0.260 5.260 16 C 0.027 3.973 17 C -0.590 4.590 18 H 0.097 0.903 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.188 1.188 25 C -0.064 4.064 26 C -0.060 4.060 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.203 0.797 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.043 0.957 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.942 -17.698 1.190 22.561 hybrid contribution -0.042 0.682 -0.012 0.684 sum 13.900 -17.015 1.178 22.002 Atomic orbital electron populations 1.23335 0.75660 1.03680 1.03111 1.86628 1.23472 1.31794 1.84310 1.20056 0.86669 0.82483 0.75818 1.91088 1.64141 1.35058 1.40561 1.20887 0.92649 0.88137 1.03916 1.67809 1.05617 1.30398 1.06029 1.22856 0.90413 0.90086 1.03262 1.98436 1.67773 1.35674 1.95849 1.23918 1.02341 0.85925 0.92220 1.69102 1.07238 1.29800 1.10585 1.20950 0.87019 0.93151 0.89401 1.60286 1.48927 1.03700 1.06343 1.22328 1.00125 0.96646 0.86547 1.21956 0.98283 0.90263 0.95950 1.62651 1.55303 1.06055 1.01949 1.20184 0.92082 0.88144 0.96906 1.21737 0.90198 0.95759 1.51277 0.90251 1.24973 0.94759 0.99014 0.94274 1.69941 1.00575 1.32890 1.50194 0.86828 0.78960 0.85238 0.78533 1.20258 1.21385 1.18824 1.21944 0.99042 0.93125 0.92326 1.22322 0.99263 0.91888 0.92488 0.91500 0.88022 0.91546 0.79685 0.92929 0.91240 0.91900 0.90713 0.95115 0.95691 0.92750 0.92105 0.90786 0.91222 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.35 -4.68 10.40 -40.61 -0.42 -5.10 16 3 C 0.51 7.86 7.93 34.55 0.27 8.14 16 4 O -0.43 -7.77 14.84 -19.25 -0.29 -8.06 16 5 C 0.09 1.23 6.77 -82.68 -0.56 0.67 16 6 N -0.38 -4.88 10.26 -6.66 -0.07 -4.95 16 7 C 0.10 1.08 7.28 -17.29 -0.13 0.95 16 8 Cl -0.01 -0.05 29.12 -51.86 -1.51 -1.56 16 9 C 0.12 1.14 11.01 -17.20 -0.19 0.95 16 10 N -0.45 -5.60 9.79 -11.95 -0.12 -5.72 16 11 C 0.32 4.68 5.33 -154.85 -0.83 3.85 16 12 N -0.47 -7.65 2.63 -172.72 -0.46 -8.11 16 13 C 0.07 1.12 5.49 -3.77 -0.02 1.10 16 14 C 0.06 1.24 5.24 -3.76 -0.02 1.22 16 15 N -0.54 -11.03 4.92 -235.91 -1.16 -12.19 16 16 C 0.15 3.63 4.23 -4.98 -0.02 3.61 16 17 C -0.55 -15.24 8.23 -34.44 -0.28 -15.52 16 18 H 0.08 2.43 6.06 -52.49 -0.32 2.11 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 21 Si 0.88 21.27 27.56 -169.99 -4.69 16.58 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.26 -6.13 6.41 56.52 0.36 -5.77 16 25 C 0.06 1.25 5.32 -3.76 -0.02 1.23 16 26 C 0.07 1.08 5.37 -3.76 -0.02 1.06 16 27 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.19 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.05 0.82 8.09 -51.92 -0.42 0.40 16 32 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 33 H 0.06 1.43 6.46 -51.93 -0.34 1.09 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.03 0.74 6.85 -51.92 -0.36 0.38 16 36 H 0.03 0.59 7.80 -51.93 -0.41 0.19 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.06 1.38 6.94 -51.93 -0.36 1.02 16 39 H 0.07 1.36 8.13 -51.93 -0.42 0.94 16 40 H 0.07 1.06 8.13 -51.93 -0.42 0.63 16 41 H 0.06 0.88 7.86 -51.93 -0.41 0.47 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -32.19 355.72 -8.57 -40.76 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -5.16 Total: -1.08 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -0.84 Total: 10.67 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -1.03 Total: -57.58 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.71 Total: -13.16 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.69 Total: 16.58 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.51 Total: -1.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.19 -8.57 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.551 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds