Wall clock time and date at job start Sat Apr 11 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34642 * 116.99560 * 2 1 4 4 O 1.21393 * 120.00064 * 359.97438 * 3 2 1 5 5 C 1.48386 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.39442 * 120.50102 * 180.02562 * 5 3 2 7 7 C 1.39009 * 118.40455 * 179.97438 * 6 5 3 8 8 Cl 1.73602 * 120.39146 * 180.02562 * 7 6 5 9 9 N 1.32234 * 119.21025 * 359.97438 * 7 6 5 10 10 C 1.32562 * 120.94914 * 0.02562 * 9 7 6 11 11 N 1.38424 * 119.12954 * 179.97438 * 10 9 7 12 12 C 1.46956 * 110.99962 * 0.02562 * 11 10 9 13 13 C 1.53056 * 109.38342 * 183.17864 * 12 11 10 14 14 N 1.46963 * 109.35944 * 301.62902 * 13 12 11 15 15 C 1.46903 * 110.99595 * 183.16796 * 14 13 12 16 16 C 1.50697 * 109.46882 * 66.17766 * 15 14 13 17 17 H 1.08001 * 120.00544 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99793 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47597 * 90.00086 * 20 18 16 22 22 H 1.48509 * 109.47155 * 210.00120 * 20 18 16 23 23 H 1.48498 * 109.47090 * 329.99721 * 20 18 16 24 24 C 1.46956 * 110.89784 * 59.28921 * 14 13 12 25 25 C 1.46962 * 111.00000 * 123.79887 * 11 10 9 26 26 N 1.32282 * 121.74365 * 0.26950 * 10 9 7 27 27 H 1.08994 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47112 * 299.99759 * 1 2 3 29 29 H 1.08991 * 109.47600 * 59.99915 * 1 2 3 30 30 H 1.08002 * 120.80139 * 359.97438 * 6 5 3 31 31 H 1.09002 * 109.48806 * 303.15591 * 12 11 10 32 32 H 1.09002 * 109.49141 * 63.19864 * 12 11 10 33 33 H 1.08992 * 109.49038 * 61.57437 * 13 12 11 34 34 H 1.08994 * 109.48641 * 181.64718 * 13 12 11 35 35 H 1.09001 * 109.46898 * 186.18135 * 15 14 13 36 36 H 1.08997 * 109.46990 * 306.17810 * 15 14 13 37 37 H 0.97005 * 119.99662 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.48806 * 180.71933 * 24 14 13 39 39 H 1.09003 * 109.49203 * 60.65575 * 24 14 13 40 40 H 1.09001 * 109.48625 * 296.77891 * 25 11 10 41 41 H 1.09003 * 109.48941 * 56.82498 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4020 2.2178 -0.0005 5 6 3.5450 1.2775 -0.0006 6 6 4.1889 2.5144 0.0000 7 6 5.5788 2.5364 -0.0001 8 17 6.4332 4.0476 0.0012 9 7 6.2423 1.3926 -0.0001 10 6 5.6010 0.2324 -0.0006 11 7 6.3332 -0.9423 -0.0011 12 6 7.7761 -0.6635 -0.0004 13 6 8.5484 -1.9824 -0.0811 14 7 8.1785 -2.8340 1.0581 15 6 8.9556 -4.0807 1.0576 16 6 10.4086 -3.7669 1.3050 17 1 10.7233 -2.7438 1.4487 18 6 11.3363 -4.7859 1.3478 19 7 10.9530 -6.0319 1.1733 20 14 13.1374 -4.3971 1.6552 21 1 13.4077 -4.4246 3.1151 22 1 13.9853 -5.4094 0.9757 23 1 13.4511 -3.0483 1.1190 24 6 6.7356 -3.1129 1.0574 25 6 5.9641 -1.7935 1.1387 26 7 4.2798 0.1675 -0.0064 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.6213 3.4332 0.0004 31 1 8.0268 -0.0421 -0.8602 32 1 8.0449 -0.1402 0.9172 33 1 8.3005 -2.4927 -1.0117 34 1 9.6188 -1.7794 -0.0512 35 1 8.5869 -4.7390 1.8443 36 1 8.8498 -4.5743 0.0916 37 1 11.6058 -6.7488 1.2031 38 1 6.4849 -3.7342 1.9172 39 1 6.4667 -3.6358 0.1396 40 1 6.2128 -1.2831 2.0692 41 1 4.8935 -1.9959 1.1097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:13 Heat of formation + Delta-G solvation = -0.040382 kcal Electronic energy + Delta-G solvation = -26796.298687 eV Core-core repulsion = 22738.837309 eV Total energy + Delta-G solvation = -4057.461378 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89833 -40.63859 -38.84537 -37.31517 -37.00689 -35.43463 -34.28180 -32.68681 -31.43302 -30.70164 -28.58646 -28.05414 -26.03065 -25.52638 -23.65756 -23.14920 -21.94603 -21.41296 -19.63777 -18.93160 -18.43074 -17.28950 -16.95636 -16.76463 -16.34421 -16.06319 -15.81516 -15.34832 -14.76288 -14.53366 -14.34448 -14.15414 -14.02124 -13.76464 -13.65403 -13.39354 -12.65745 -12.55729 -12.19938 -11.97081 -11.91061 -11.58369 -11.41216 -11.27721 -11.24458 -11.04020 -10.99647 -10.86160 -10.78889 -10.56880 -10.47954 -10.31916 -9.87309 -9.76910 -9.23715 -8.64228 -8.45531 -7.35053 -6.05660 -4.07412 -0.15003 0.34104 1.05680 1.88389 2.00919 2.79970 3.19777 3.30992 3.37196 3.40403 3.65163 4.07680 4.12853 4.39574 4.55842 4.66915 4.72283 4.79484 4.82685 5.06671 5.14573 5.28962 5.32720 5.34852 5.49029 5.58672 5.73150 5.77640 5.91742 6.01355 6.11066 6.26663 6.41953 6.54114 6.60054 6.87260 7.10818 7.22083 7.29180 7.58163 7.74478 8.00717 8.11479 8.47421 8.99830 9.57161 11.05146 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002661 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.616474 B =10518.901857 C =12264.043125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.327 6.327 3 C 0.530 3.470 4 O -0.485 6.485 5 C 0.187 3.813 6 C -0.194 4.194 7 C 0.253 3.747 8 Cl 0.002 6.998 9 N -0.522 5.522 10 C 0.523 3.477 11 N -0.451 5.451 12 C 0.069 3.931 13 C 0.064 3.936 14 N -0.540 5.540 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.055 3.945 25 C 0.071 3.929 26 N -0.482 5.482 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.170 0.830 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.032 0.968 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.084 0.916 39 H 0.038 0.962 40 H 0.056 0.944 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.722 16.663 -2.752 25.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.241 6.241 3 C 0.371 3.629 4 O -0.370 6.370 5 C 0.037 3.963 6 C -0.220 4.220 7 C 0.076 3.924 8 Cl 0.031 6.969 9 N -0.246 5.246 10 C 0.168 3.832 11 N -0.170 5.170 12 C -0.058 4.058 13 C -0.065 4.065 14 N -0.265 5.265 15 C 0.069 3.931 16 C -0.548 4.548 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.074 4.074 25 C -0.055 4.055 26 N -0.204 5.204 27 H 0.127 0.873 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.188 0.812 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.050 0.950 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.269 15.908 -2.750 24.380 hybrid contribution 0.457 0.938 -0.141 1.053 sum -17.811 16.845 -2.891 24.685 Atomic orbital electron populations 1.23445 0.75246 1.04514 1.02819 1.86699 1.23768 1.30857 1.82760 1.20472 0.86990 0.82232 0.73202 1.90878 1.65360 1.36148 1.44659 1.20136 0.91555 0.88731 0.95865 1.22338 0.93617 1.00279 1.05764 1.21792 0.88638 0.89165 0.92846 1.98460 1.78031 1.24676 1.95762 1.67785 1.41779 0.97598 1.17411 1.21056 0.85836 0.87824 0.88470 1.58753 1.07891 1.08983 1.41371 1.22392 0.81586 0.98811 1.02977 1.22113 1.00349 0.91442 0.92604 1.62353 1.02345 1.20556 1.41267 1.19714 0.92667 0.84638 0.96046 1.21140 0.91475 0.93654 1.48515 0.91820 1.24989 0.99201 0.94954 0.95416 1.69962 1.34473 0.99064 1.50229 0.86498 0.84542 0.78043 0.78326 1.20644 1.21331 1.19813 1.22130 0.90005 0.93987 1.01311 1.22437 1.01030 0.93513 0.88487 1.68070 1.06208 1.30766 1.15312 0.87329 0.91448 0.91468 0.81198 0.89541 0.91684 0.94897 0.88430 0.95014 0.98827 0.92881 0.89818 0.94417 0.92608 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.33 -3.36 10.42 -40.34 -0.42 -3.78 16 3 C 0.53 5.85 7.97 34.91 0.28 6.13 16 4 O -0.48 -5.65 16.20 -19.18 -0.31 -5.96 16 5 C 0.19 2.19 6.79 -82.69 -0.56 1.63 16 6 C -0.19 -2.00 9.52 -38.85 -0.37 -2.36 16 7 C 0.25 2.88 7.34 -17.09 -0.13 2.76 16 8 Cl 0.00 0.02 29.15 -51.86 -1.51 -1.49 16 9 N -0.52 -7.15 8.66 -11.03 -0.10 -7.25 16 10 C 0.52 7.56 7.17 -322.97 -2.31 5.25 16 11 N -0.45 -6.96 4.77 -175.26 -0.84 -7.80 16 12 C 0.07 1.09 4.76 -3.76 -0.02 1.07 16 13 C 0.06 1.20 5.43 -3.76 -0.02 1.17 16 14 N -0.54 -11.15 4.70 -235.90 -1.11 -12.26 16 15 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 16 C -0.51 -13.88 8.47 -34.44 -0.29 -14.17 16 17 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 18 C 0.06 1.55 5.46 -17.81 -0.10 1.46 16 19 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 24 C 0.05 0.94 5.61 -3.77 -0.02 0.92 16 25 C 0.07 1.05 5.46 -3.76 -0.02 1.03 16 26 N -0.48 -6.58 9.53 -10.52 -0.10 -6.68 16 27 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.17 1.36 7.73 -52.49 -0.41 0.95 16 31 H 0.09 1.29 7.80 -51.93 -0.40 0.88 16 32 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.94 6.79 -51.93 -0.35 1.59 16 35 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 36 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.28 7.64 -51.93 -0.40 0.88 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -30.66 363.33 -10.99 -41.65 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -5.28 Total: -3.70 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -2.52 Total: 11.03 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -1.40 Total: -59.48 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.73 Total: -9.74 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -1.51 Total: -1.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.66 -10.99 -41.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.607 kcal (2) G-P(sol) polarization free energy of solvation -30.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds