Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34642 * 116.99560 * 2 1 4 4 O 1.21393 * 120.00064 * 359.97438 * 3 2 1 5 5 C 1.48386 * 119.99945 * 180.02562 * 3 2 1 6 6 C 1.39442 * 120.50102 * 180.02562 * 5 3 2 7 7 C 1.39009 * 118.40455 * 179.97438 * 6 5 3 8 8 Cl 1.73602 * 120.39146 * 180.02562 * 7 6 5 9 9 N 1.32234 * 119.21025 * 359.97438 * 7 6 5 10 10 C 1.32562 * 120.94914 * 0.02562 * 9 7 6 11 11 N 1.38424 * 119.12954 * 179.97438 * 10 9 7 12 12 C 1.46956 * 110.99962 * 0.02562 * 11 10 9 13 13 C 1.53056 * 109.38342 * 183.17864 * 12 11 10 14 14 N 1.46963 * 109.35944 * 301.62902 * 13 12 11 15 15 C 1.46903 * 110.99595 * 183.16796 * 14 13 12 16 16 C 1.50697 * 109.46882 * 66.17766 * 15 14 13 17 17 H 1.08001 * 120.00544 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99793 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99817 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00173 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47597 * 90.00086 * 20 18 16 22 22 H 1.48509 * 109.47155 * 210.00120 * 20 18 16 23 23 H 1.48498 * 109.47090 * 329.99721 * 20 18 16 24 24 C 1.46956 * 110.89784 * 59.28921 * 14 13 12 25 25 C 1.46962 * 111.00000 * 123.79887 * 11 10 9 26 26 N 1.32282 * 121.74365 * 0.26950 * 10 9 7 27 27 H 1.08994 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47112 * 299.99759 * 1 2 3 29 29 H 1.08991 * 109.47600 * 59.99915 * 1 2 3 30 30 H 1.08002 * 120.80139 * 359.97438 * 6 5 3 31 31 H 1.09002 * 109.48806 * 303.15591 * 12 11 10 32 32 H 1.09002 * 109.49141 * 63.19864 * 12 11 10 33 33 H 1.08992 * 109.49038 * 61.57437 * 13 12 11 34 34 H 1.08994 * 109.48641 * 181.64718 * 13 12 11 35 35 H 1.09001 * 109.46898 * 186.18135 * 15 14 13 36 36 H 1.08997 * 109.46990 * 306.17810 * 15 14 13 37 37 H 0.97005 * 119.99662 * 179.97438 * 19 18 16 38 38 H 1.09002 * 109.48806 * 180.71933 * 24 14 13 39 39 H 1.09003 * 109.49203 * 60.65575 * 24 14 13 40 40 H 1.09001 * 109.48625 * 296.77891 * 25 11 10 41 41 H 1.09003 * 109.48941 * 56.82498 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4020 2.2178 -0.0005 5 6 3.5450 1.2775 -0.0006 6 6 4.1889 2.5144 0.0000 7 6 5.5788 2.5364 -0.0001 8 17 6.4332 4.0476 0.0012 9 7 6.2423 1.3926 -0.0001 10 6 5.6010 0.2324 -0.0006 11 7 6.3332 -0.9423 -0.0011 12 6 7.7761 -0.6635 -0.0004 13 6 8.5484 -1.9824 -0.0811 14 7 8.1785 -2.8340 1.0581 15 6 8.9556 -4.0807 1.0576 16 6 10.4086 -3.7669 1.3050 17 1 10.7233 -2.7438 1.4487 18 6 11.3363 -4.7859 1.3478 19 7 10.9530 -6.0319 1.1733 20 14 13.1374 -4.3971 1.6552 21 1 13.4077 -4.4246 3.1151 22 1 13.9853 -5.4094 0.9757 23 1 13.4511 -3.0483 1.1190 24 6 6.7356 -3.1129 1.0574 25 6 5.9641 -1.7935 1.1387 26 7 4.2798 0.1675 -0.0064 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 3.6213 3.4332 0.0004 31 1 8.0268 -0.0421 -0.8602 32 1 8.0449 -0.1402 0.9172 33 1 8.3005 -2.4927 -1.0117 34 1 9.6188 -1.7794 -0.0512 35 1 8.5869 -4.7390 1.8443 36 1 8.8498 -4.5743 0.0916 37 1 11.6058 -6.7488 1.2031 38 1 6.4849 -3.7342 1.9172 39 1 6.4667 -3.6358 0.1396 40 1 6.2128 -1.2831 2.0692 41 1 4.8935 -1.9959 1.1097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -19.090518 kcal Electronic energy + Delta-G solvation = -26797.124763 eV Core-core repulsion = 22738.837309 eV Total energy + Delta-G solvation = -4058.287453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.87208 -41.48921 -40.13341 -38.18019 -37.80579 -36.88921 -35.26863 -34.63128 -32.60714 -32.06515 -29.76599 -29.22114 -27.18033 -26.88013 -24.82657 -24.50073 -23.44209 -22.61798 -20.95820 -19.92508 -19.41385 -18.45743 -18.16434 -17.78840 -17.73309 -16.92005 -16.83606 -16.71014 -16.20031 -15.93264 -15.66153 -15.49513 -15.32837 -14.93027 -14.78219 -14.44324 -14.05086 -13.67591 -13.38679 -13.15098 -13.10661 -12.81806 -12.79567 -12.58538 -12.41185 -12.35926 -12.20834 -12.19637 -12.14508 -11.93567 -11.89015 -11.66901 -11.36452 -11.19044 -10.79690 -10.59143 -9.75085 -9.08486 -8.18817 -6.28487 -1.06086 -0.59732 0.19973 1.01017 1.24114 1.43821 1.44608 1.55645 1.75444 2.24132 2.41986 2.74746 3.06650 3.13443 3.22768 3.28465 3.60489 3.81072 3.90120 4.01912 4.18669 4.24054 4.24748 4.34746 4.36057 4.40164 4.61724 4.72878 4.74649 4.86478 4.94104 4.96921 5.01448 5.17324 5.17749 5.23536 5.39278 5.65347 5.76278 6.04761 6.26832 6.29490 6.56873 6.59305 6.86984 7.41196 8.92325 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.002661 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.616474 B =10518.901857 C =12264.043125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.535 3.465 4 O -0.493 6.493 5 C 0.178 3.822 6 C -0.173 4.173 7 C 0.247 3.753 8 Cl 0.021 6.979 9 N -0.537 5.537 10 C 0.513 3.487 11 N -0.462 5.462 12 C 0.087 3.913 13 C 0.068 3.932 14 N -0.545 5.545 15 C 0.210 3.790 16 C -0.522 4.522 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.263 1.263 24 C 0.056 3.944 25 C 0.084 3.916 26 N -0.493 5.493 27 H 0.132 0.868 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.196 0.804 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.009 0.991 36 H -0.035 1.035 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.032 0.968 40 H 0.055 0.945 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 18.773 -2.616 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.254 6.254 3 C 0.376 3.624 4 O -0.380 6.380 5 C 0.029 3.971 6 C -0.198 4.198 7 C 0.071 3.929 8 Cl 0.050 6.950 9 N -0.260 5.260 10 C 0.157 3.843 11 N -0.182 5.182 12 C -0.039 4.039 13 C -0.061 4.061 14 N -0.270 5.270 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.073 4.073 25 C -0.042 4.042 26 N -0.214 5.214 27 H 0.150 0.850 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.213 0.787 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.027 0.973 36 H -0.018 1.018 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.064 18.058 -2.617 26.389 hybrid contribution 0.550 0.369 -0.199 0.691 sum -18.514 18.427 -2.816 26.272 Atomic orbital electron populations 1.23771 0.73126 1.06335 1.03452 1.86683 1.25906 1.30446 1.82355 1.20319 0.86631 0.82427 0.73034 1.90872 1.65405 1.36401 1.45316 1.20393 0.92021 0.88802 0.95857 1.22599 0.93238 1.00768 1.03214 1.22022 0.89241 0.89193 0.92477 1.98470 1.77786 1.23161 1.95584 1.67738 1.42375 0.98051 1.17825 1.20839 0.86065 0.87627 0.89745 1.58699 1.07443 1.10069 1.41956 1.22112 0.81935 0.96635 1.03265 1.22046 1.00108 0.92511 0.91416 1.62259 1.03966 1.18489 1.42304 1.19353 0.92798 0.86016 0.93483 1.21456 0.92611 0.93766 1.48214 0.91684 1.25886 1.03909 0.94710 0.95052 1.70088 1.36074 1.00087 1.51236 0.85409 0.78817 0.78207 0.78355 1.19983 1.20972 1.18719 1.22180 0.88082 0.95780 1.01255 1.22284 1.01306 0.91989 0.88576 1.68011 1.05907 1.31833 1.15672 0.85024 0.90783 0.90872 0.78695 0.88396 0.92061 0.95850 0.89906 0.97298 1.01779 0.92719 0.89301 0.95015 0.92618 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 113.37 1.20 1.47 16 2 O -0.34 -6.41 10.42 -55.51 -0.58 -6.99 16 3 C 0.53 10.84 7.97 70.53 0.56 11.40 16 4 O -0.49 -10.48 16.20 20.18 0.33 -10.15 16 5 C 0.18 3.85 6.79 41.95 0.28 4.14 16 6 C -0.17 -3.14 9.52 22.74 0.22 -2.93 16 7 C 0.25 5.12 7.34 84.82 0.62 5.74 16 8 Cl 0.02 0.36 29.15 -2.72 -0.08 0.28 16 9 N -0.54 -13.87 8.66 -188.82 -1.64 -15.50 16 10 C 0.51 14.20 7.17 261.54 1.87 16.07 16 11 N -0.46 -13.94 4.77 -708.39 -3.38 -17.32 16 12 C 0.09 2.73 4.76 86.31 0.41 3.14 16 13 C 0.07 2.59 5.43 86.31 0.47 3.06 16 14 N -0.55 -23.05 4.70 -900.26 -4.23 -27.28 16 15 C 0.21 10.97 4.72 85.56 0.40 11.37 16 16 C -0.52 -29.02 8.47 25.60 0.22 -28.81 16 17 H 0.07 3.53 7.13 -2.91 -0.02 3.50 16 18 C 0.00 0.14 5.46 84.65 0.46 0.60 16 19 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 20 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 24 C 0.06 1.94 5.61 86.31 0.48 2.42 16 25 C 0.08 2.44 5.46 86.31 0.47 2.92 16 26 N -0.49 -12.75 9.53 -187.20 -1.78 -14.54 16 27 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.20 2.50 7.73 -2.91 -0.02 2.47 16 31 H 0.10 2.84 7.80 -2.39 -0.02 2.82 16 32 H 0.06 1.96 8.03 -2.39 -0.02 1.95 16 33 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 3.38 6.79 -2.39 -0.02 3.36 16 35 H 0.01 0.50 8.03 -2.39 -0.02 0.48 16 36 H -0.04 -2.03 8.12 -2.39 -0.02 -2.05 16 37 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 38 H 0.09 2.97 8.07 -2.39 -0.02 2.95 16 39 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 2.87 7.64 -2.39 -0.02 2.85 16 Total: -1.00 -66.09 363.33 -0.32 -66.40 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.06 Total: 4.14 kcal Atomic # 6 Polarization: 22.93 SS G_CDS: 7.68 Total: 30.60 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -10.75 Total: -130.10 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.25 Total: -17.13 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -0.08 Total: 0.28 kcal Total: -66.09 -0.32 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.311 kcal (2) G-P(sol) polarization free energy of solvation -66.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds