Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34770 * 117.00246 * 2 1 4 4 O 1.21524 * 119.99472 * 359.97438 * 3 2 1 5 5 C 1.47243 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.39856 * 120.98930 * 354.71739 * 5 3 2 7 7 N 1.32150 * 119.00930 * 179.73854 * 6 5 3 8 8 C 1.32125 * 121.18493 * 0.52043 * 7 6 5 9 9 Cl 1.73606 * 118.89415 * 179.72575 * 8 7 6 10 10 N 1.31818 * 122.21564 * 359.75146 * 8 7 6 11 11 C 1.32946 * 120.83261 * 359.97438 * 10 8 7 12 12 N 1.37841 * 120.63761 * 180.02562 * 11 10 8 13 13 C 1.46953 * 110.99845 * 68.52497 * 12 11 10 14 14 C 1.53056 * 109.36227 * 176.81696 * 13 12 11 15 15 N 1.46951 * 109.36552 * 58.40070 * 14 13 12 16 16 C 1.46898 * 111.00016 * 176.81182 * 15 14 13 17 17 C 1.50704 * 109.47075 * 59.36456 * 16 15 14 18 18 H 1.07993 * 119.99938 * 355.19603 * 17 16 15 19 19 C 1.37876 * 119.99949 * 175.20168 * 17 16 15 20 20 N 1.31518 * 120.00253 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46914 * 60.00200 * 21 19 17 23 23 H 1.48497 * 109.47193 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47340 * 300.00195 * 21 19 17 25 25 C 1.46960 * 110.88277 * 300.68068 * 15 14 13 26 26 C 1.46966 * 110.99557 * 304.73112 * 12 11 10 27 27 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47233 * 300.00473 * 1 2 3 29 29 H 1.09001 * 109.46971 * 60.00252 * 1 2 3 30 30 H 1.08008 * 120.48976 * 359.97438 * 6 5 3 31 31 H 1.08998 * 109.49396 * 296.78264 * 13 12 11 32 32 H 1.08996 * 109.49047 * 56.85520 * 13 12 11 33 33 H 1.09007 * 109.48854 * 298.43519 * 14 13 12 34 34 H 1.08996 * 109.49025 * 178.37480 * 14 13 12 35 35 H 1.08998 * 109.47616 * 179.36009 * 16 15 14 36 36 H 1.09002 * 109.47476 * 299.35976 * 16 15 14 37 37 H 0.96992 * 120.00167 * 180.02562 * 20 19 17 38 38 H 1.09003 * 109.48645 * 299.35335 * 25 15 14 39 39 H 1.08998 * 109.48797 * 179.28834 * 25 15 14 40 40 H 1.08996 * 109.48283 * 303.15248 * 26 12 11 41 41 H 1.08991 * 109.48849 * 63.19714 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5343 1.2778 0.0006 6 6 4.3158 0.1233 0.1115 7 7 5.6324 0.2373 0.1025 8 6 6.2162 1.4182 0.0014 9 17 7.9503 1.4996 0.0028 10 7 5.5262 2.5368 -0.1001 11 6 4.1969 2.5194 -0.1051 12 7 3.4794 3.6915 -0.2120 13 6 3.6404 4.2878 -1.5454 14 6 2.7679 5.5410 -1.6496 15 7 3.1556 6.4933 -0.5996 16 6 2.3911 7.7424 -0.7134 17 6 0.9190 7.4432 -0.5926 18 1 0.5798 6.4202 -0.5238 19 6 0.0053 8.4755 -0.5698 20 7 0.4183 9.7213 -0.6532 21 14 -1.8195 8.1045 -0.4207 22 1 -2.0738 7.3723 0.8460 23 1 -2.5847 9.3771 -0.4185 24 1 -2.2504 7.2692 -1.5703 25 6 2.9947 5.8969 0.7339 26 6 3.8672 4.6438 0.8380 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.8502 -0.8473 0.1993 31 1 4.6850 4.5582 -1.6992 32 1 3.3351 3.5681 -2.3049 33 1 1.7206 5.2666 -1.5229 34 1 2.9078 6.0012 -2.6276 35 1 2.6895 8.4250 0.0822 36 1 2.5899 8.2033 -1.6810 37 1 -0.2244 10.4475 -0.6368 38 1 1.9500 5.6266 0.8876 39 1 3.2999 6.6167 1.4933 40 1 3.7272 4.1835 1.8160 41 1 4.9145 4.9179 0.7115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -1.500075 kcal Electronic energy + Delta-G solvation = -27866.082738 eV Core-core repulsion = 23808.558063 eV Total energy + Delta-G solvation = -4057.524675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82220 -40.08844 -38.91870 -37.26298 -36.50931 -35.69101 -33.63157 -32.65900 -31.79211 -30.50782 -28.33171 -27.63564 -25.52490 -25.36222 -23.55315 -23.12342 -21.69451 -21.65923 -19.45337 -18.56038 -18.21247 -17.77797 -16.77879 -16.58510 -16.28522 -15.72875 -15.72062 -14.79079 -14.61867 -14.57502 -14.23329 -14.15896 -14.03599 -13.37110 -13.16491 -12.97921 -12.41973 -12.16566 -12.06572 -12.04699 -11.93401 -11.82554 -11.46744 -11.03504 -10.91628 -10.90853 -10.69810 -10.62107 -10.59865 -10.48373 -10.15270 -9.94657 -9.81338 -9.79104 -9.54319 -8.61980 -8.41166 -7.19706 -6.01016 -4.09641 -0.17566 0.47600 0.97774 2.29803 2.38825 3.17871 3.21635 3.31101 3.35368 3.39110 3.63614 4.06991 4.34592 4.43164 4.45476 4.79423 4.96197 4.97058 5.05710 5.27434 5.29671 5.37145 5.44238 5.49472 5.62215 5.81223 5.88161 5.97846 6.12133 6.14824 6.30318 6.53309 6.72651 6.81793 6.90217 7.05591 7.26432 7.31510 7.53851 7.65401 7.91447 8.02763 8.23463 8.30816 9.00840 9.57386 11.04245 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003633 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.448317 B = 7706.103641 C = 9604.756304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.365 6.365 3 C 0.506 3.494 4 O -0.440 6.440 5 C -0.210 4.210 6 C 0.224 3.776 7 N -0.521 5.521 8 C 0.400 3.600 9 Cl 0.032 6.968 10 N -0.535 5.535 11 C 0.433 3.567 12 N -0.472 5.472 13 C 0.069 3.931 14 C 0.067 3.933 15 N -0.542 5.542 16 C 0.188 3.812 17 C -0.549 4.549 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.067 3.933 26 C 0.065 3.935 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.195 0.805 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.029 0.971 37 H 0.262 0.738 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.958 -22.004 1.559 23.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.346 3.654 4 O -0.323 6.323 5 C -0.218 4.218 6 C 0.057 3.943 7 N -0.239 5.239 8 C 0.106 3.894 9 Cl 0.060 6.940 10 N -0.256 5.256 11 C 0.196 3.804 12 N -0.196 5.196 13 C -0.057 4.057 14 C -0.062 4.062 15 N -0.266 5.266 16 C 0.063 3.937 17 C -0.588 4.588 18 H 0.078 0.922 19 C -0.137 4.137 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.062 4.062 26 C -0.061 4.061 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.212 0.788 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.797 -21.349 1.540 23.142 hybrid contribution -2.025 -0.125 0.124 2.033 sum 6.772 -21.473 1.665 22.577 Atomic orbital electron populations 1.23274 0.75393 1.03608 1.03086 1.86476 1.23963 1.32609 1.85225 1.20171 0.87597 0.82170 0.75498 1.91046 1.65269 1.34981 1.40967 1.20784 0.93114 0.95164 1.12744 1.23676 0.87011 0.98813 0.84751 1.67997 1.12147 1.26370 1.17339 1.23226 0.90226 0.85168 0.90823 1.98462 1.01889 1.98114 1.95583 1.68410 1.08680 1.31340 1.17214 1.20358 0.84787 0.92352 0.82920 1.60290 1.49391 1.03236 1.06633 1.22354 1.00482 0.96686 0.86190 1.21921 0.97768 0.90186 0.96364 1.62723 1.56583 1.06018 1.01316 1.19732 0.90387 0.85746 0.97869 1.21756 0.92829 0.93086 1.51166 0.92170 1.24948 0.98836 0.94985 0.94922 1.69934 1.34520 0.98536 1.50116 0.86704 0.85419 0.77449 0.78746 1.20262 1.21300 1.20264 1.21908 0.98548 0.92755 0.92960 1.22356 0.99572 0.92088 0.92082 0.88028 0.91628 0.91582 0.78796 0.92654 0.91302 0.92586 0.90667 0.94704 0.95283 0.92802 0.92783 0.90686 0.91302 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.36 -3.70 9.92 -40.68 -0.40 -4.10 16 3 C 0.51 6.59 7.89 34.39 0.27 6.86 16 4 O -0.44 -7.35 15.00 -19.28 -0.29 -7.64 16 5 C -0.21 -2.59 5.92 -104.54 -0.62 -3.21 16 6 C 0.22 2.17 10.89 -16.81 -0.18 1.99 16 7 N -0.52 -5.85 10.38 -11.33 -0.12 -5.97 16 8 C 0.40 4.95 8.17 -91.85 -0.75 4.20 16 9 Cl 0.03 0.34 29.26 -51.86 -1.52 -1.18 16 10 N -0.54 -7.51 9.74 -10.63 -0.10 -7.61 16 11 C 0.43 6.23 5.36 -154.91 -0.83 5.40 16 12 N -0.47 -7.72 2.80 -172.60 -0.48 -8.20 16 13 C 0.07 1.13 5.49 -3.77 -0.02 1.11 16 14 C 0.07 1.31 5.24 -3.77 -0.02 1.29 16 15 N -0.54 -11.60 4.92 -235.91 -1.16 -12.76 16 16 C 0.19 4.81 5.14 -4.97 -0.03 4.78 16 17 C -0.55 -15.07 7.67 -34.44 -0.26 -15.34 16 18 H 0.06 1.67 5.81 -52.49 -0.31 1.36 16 19 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 20 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C 0.07 1.33 5.32 -3.77 -0.02 1.31 16 26 C 0.07 1.08 5.38 -3.76 -0.02 1.06 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.20 1.18 7.71 -52.48 -0.40 0.77 16 31 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 33 H 0.06 1.24 6.46 -51.93 -0.34 0.91 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.03 0.96 8.12 -51.93 -0.42 0.53 16 36 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.05 1.20 6.95 -51.93 -0.36 0.84 16 39 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 40 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 41 H 0.06 0.98 7.87 -51.93 -0.41 0.57 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -31.26 359.07 -9.63 -40.89 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.17 Total: -2.58 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -1.51 Total: 12.60 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -1.13 Total: -60.03 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.69 Total: -11.74 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -1.52 Total: -1.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.26 -9.63 -40.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.394 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds