Wall clock time and date at job start Sat Apr 11 2020 05:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34770 * 117.00246 * 2 1 4 4 O 1.21524 * 119.99472 * 359.97438 * 3 2 1 5 5 C 1.47243 * 120.00086 * 179.97438 * 3 2 1 6 6 C 1.39856 * 120.98930 * 354.71739 * 5 3 2 7 7 N 1.32150 * 119.00930 * 179.73854 * 6 5 3 8 8 C 1.32125 * 121.18493 * 0.52043 * 7 6 5 9 9 Cl 1.73606 * 118.89415 * 179.72575 * 8 7 6 10 10 N 1.31818 * 122.21564 * 359.75146 * 8 7 6 11 11 C 1.32946 * 120.83261 * 359.97438 * 10 8 7 12 12 N 1.37841 * 120.63761 * 180.02562 * 11 10 8 13 13 C 1.46953 * 110.99845 * 68.52497 * 12 11 10 14 14 C 1.53056 * 109.36227 * 176.81696 * 13 12 11 15 15 N 1.46951 * 109.36552 * 58.40070 * 14 13 12 16 16 C 1.46898 * 111.00016 * 176.81182 * 15 14 13 17 17 C 1.50704 * 109.47075 * 59.36456 * 16 15 14 18 18 H 1.07993 * 119.99938 * 355.19603 * 17 16 15 19 19 C 1.37876 * 119.99949 * 175.20168 * 17 16 15 20 20 N 1.31518 * 120.00253 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99959 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46914 * 60.00200 * 21 19 17 23 23 H 1.48497 * 109.47193 * 179.97438 * 21 19 17 24 24 H 1.48489 * 109.47340 * 300.00195 * 21 19 17 25 25 C 1.46960 * 110.88277 * 300.68068 * 15 14 13 26 26 C 1.46966 * 110.99557 * 304.73112 * 12 11 10 27 27 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47233 * 300.00473 * 1 2 3 29 29 H 1.09001 * 109.46971 * 60.00252 * 1 2 3 30 30 H 1.08008 * 120.48976 * 359.97438 * 6 5 3 31 31 H 1.08998 * 109.49396 * 296.78264 * 13 12 11 32 32 H 1.08996 * 109.49047 * 56.85520 * 13 12 11 33 33 H 1.09007 * 109.48854 * 298.43519 * 14 13 12 34 34 H 1.08996 * 109.49025 * 178.37480 * 14 13 12 35 35 H 1.08998 * 109.47616 * 179.36009 * 16 15 14 36 36 H 1.09002 * 109.47476 * 299.35976 * 16 15 14 37 37 H 0.96992 * 120.00167 * 180.02562 * 20 19 17 38 38 H 1.09003 * 109.48645 * 299.35335 * 25 15 14 39 39 H 1.08998 * 109.48797 * 179.28834 * 25 15 14 40 40 H 1.08996 * 109.48283 * 303.15248 * 26 12 11 41 41 H 1.08991 * 109.48849 * 63.19714 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5343 1.2778 0.0006 6 6 4.3158 0.1233 0.1115 7 7 5.6324 0.2373 0.1025 8 6 6.2162 1.4182 0.0014 9 17 7.9503 1.4996 0.0028 10 7 5.5262 2.5368 -0.1001 11 6 4.1969 2.5194 -0.1051 12 7 3.4794 3.6915 -0.2120 13 6 3.6404 4.2878 -1.5454 14 6 2.7679 5.5410 -1.6496 15 7 3.1556 6.4933 -0.5996 16 6 2.3911 7.7424 -0.7134 17 6 0.9190 7.4432 -0.5926 18 1 0.5798 6.4202 -0.5238 19 6 0.0053 8.4755 -0.5698 20 7 0.4183 9.7213 -0.6532 21 14 -1.8195 8.1045 -0.4207 22 1 -2.0738 7.3723 0.8460 23 1 -2.5847 9.3771 -0.4185 24 1 -2.2504 7.2692 -1.5703 25 6 2.9947 5.8969 0.7339 26 6 3.8672 4.6438 0.8380 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.8502 -0.8473 0.1993 31 1 4.6850 4.5582 -1.6992 32 1 3.3351 3.5681 -2.3049 33 1 1.7206 5.2666 -1.5229 34 1 2.9078 6.0012 -2.6276 35 1 2.6895 8.4250 0.0822 36 1 2.5899 8.2033 -1.6810 37 1 -0.2244 10.4475 -0.6368 38 1 1.9500 5.6266 0.8876 39 1 3.2999 6.6167 1.4933 40 1 3.7272 4.1835 1.8160 41 1 4.9145 4.9179 0.7115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056447.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:15 Heat of formation + Delta-G solvation = -21.999070 kcal Electronic energy + Delta-G solvation = -27866.971641 eV Core-core repulsion = 23808.558063 eV Total energy + Delta-G solvation = -4058.413578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.82260 -41.04010 -40.29492 -38.18417 -37.57660 -37.07392 -34.91867 -34.31124 -33.09051 -32.00430 -29.82578 -28.64642 -27.14219 -26.38621 -24.89236 -24.63135 -23.40308 -22.62272 -20.98759 -19.60376 -19.26474 -18.83119 -18.33842 -17.69202 -17.51269 -17.05288 -16.75700 -16.53801 -15.90373 -15.83021 -15.76960 -15.44971 -14.99081 -14.92426 -14.50358 -14.26123 -13.85210 -13.64477 -13.24163 -13.14587 -12.97207 -12.91790 -12.83351 -12.68668 -12.66958 -12.37480 -12.23863 -12.07726 -11.84244 -11.80244 -11.74369 -11.62964 -11.56852 -10.81144 -10.77549 -10.60526 -9.87725 -9.08177 -8.16157 -6.34472 -1.13915 -0.45309 0.08117 1.32241 1.35980 1.37219 1.45824 1.52261 2.08931 2.24804 2.37315 2.71070 3.09148 3.12199 3.27637 3.42072 3.49073 3.79435 4.05226 4.06535 4.16132 4.36256 4.38305 4.39987 4.40707 4.53782 4.65552 4.67255 4.78272 4.90031 5.03843 5.16339 5.20382 5.23764 5.32895 5.38556 5.56648 5.72140 5.82367 6.02597 6.22000 6.36976 6.43005 6.70924 6.84904 7.36626 8.86646 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003633 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.448317 B = 7706.103641 C = 9604.756304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.351 6.351 3 C 0.513 3.487 4 O -0.486 6.486 5 C -0.214 4.214 6 C 0.247 3.753 7 N -0.518 5.518 8 C 0.395 3.605 9 Cl 0.045 6.955 10 N -0.552 5.552 11 C 0.417 3.583 12 N -0.482 5.482 13 C 0.082 3.918 14 C 0.071 3.929 15 N -0.539 5.539 16 C 0.202 3.798 17 C -0.555 4.555 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.925 5.925 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.271 1.271 25 C 0.072 3.928 26 C 0.080 3.920 27 H 0.141 0.859 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.237 0.763 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.011 0.989 36 H 0.008 0.992 37 H 0.265 0.735 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.979 -25.159 1.783 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.355 3.645 4 O -0.372 6.372 5 C -0.221 4.221 6 C 0.081 3.919 7 N -0.235 5.235 8 C 0.101 3.899 9 Cl 0.073 6.927 10 N -0.273 5.273 11 C 0.181 3.819 12 N -0.206 5.206 13 C -0.044 4.044 14 C -0.057 4.057 15 N -0.263 5.263 16 C 0.075 3.925 17 C -0.594 4.594 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.565 5.565 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.204 1.204 24 H -0.196 1.196 25 C -0.057 4.057 26 C -0.047 4.047 27 H 0.159 0.841 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.253 0.747 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.840 -24.549 1.765 26.152 hybrid contribution -1.976 0.741 0.059 2.111 sum 6.864 -23.809 1.824 24.845 Atomic orbital electron populations 1.23557 0.74052 1.05943 1.02361 1.86475 1.25142 1.30785 1.84428 1.20299 0.87768 0.82284 0.74192 1.91042 1.66218 1.36569 1.43337 1.20804 0.93024 0.95194 1.13113 1.24306 0.86160 0.99395 0.82040 1.68150 1.12703 1.25521 1.17157 1.23434 0.90859 0.85141 0.90420 1.98468 1.00712 1.98104 1.95427 1.68306 1.08596 1.32355 1.18080 1.20247 0.85140 0.92020 0.84501 1.60178 1.50564 1.03782 1.06044 1.22144 0.99582 0.95386 0.87273 1.21872 0.96943 0.91223 0.95710 1.62653 1.55419 1.05394 1.02805 1.19393 0.90213 0.87244 0.95624 1.21927 0.93859 0.92790 1.50838 0.92840 1.25746 1.03333 0.94777 0.94568 1.70046 1.36063 0.99391 1.50959 0.85676 0.80052 0.77536 0.78843 1.19842 1.20442 1.19634 1.21857 0.97670 0.94261 0.91885 1.22132 0.98519 0.90838 0.93192 0.84098 0.92321 0.92451 0.74697 0.92402 0.89698 0.95352 0.90660 0.97113 0.97413 0.92571 0.95614 0.90806 0.89896 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.35 -6.16 9.92 -56.81 -0.56 -6.72 16 3 C 0.51 12.51 7.89 70.19 0.55 13.07 16 4 O -0.49 -16.12 15.00 19.76 0.30 -15.83 16 5 C -0.21 -4.78 5.92 -19.81 -0.12 -4.90 16 6 C 0.25 3.91 10.89 85.04 0.93 4.84 16 7 N -0.52 -10.00 10.38 -189.76 -1.97 -11.97 16 8 C 0.40 8.91 8.17 180.78 1.48 10.39 16 9 Cl 0.04 0.87 29.26 -2.72 -0.08 0.79 16 10 N -0.55 -14.58 9.74 -187.56 -1.83 -16.40 16 11 C 0.42 11.44 5.36 133.78 0.72 12.15 16 12 N -0.48 -15.61 2.80 -699.99 -1.96 -17.58 16 13 C 0.08 2.69 5.49 86.31 0.47 3.16 16 14 C 0.07 2.88 5.24 86.31 0.45 3.33 16 15 N -0.54 -23.90 4.92 -900.27 -4.43 -28.33 16 16 C 0.20 10.80 5.14 85.56 0.44 11.24 16 17 C -0.56 -31.48 7.67 25.60 0.20 -31.29 16 18 H 0.05 3.07 5.81 -2.91 -0.02 3.05 16 19 C 0.02 0.88 5.46 84.65 0.46 1.34 16 20 N -0.92 -55.53 13.29 21.45 0.28 -55.24 16 21 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 22 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 25 C 0.07 2.94 5.32 86.31 0.46 3.40 16 26 C 0.08 2.64 5.38 86.31 0.46 3.11 16 27 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.24 1.66 7.71 -2.91 -0.02 1.64 16 31 H 0.06 1.87 8.10 -2.39 -0.02 1.86 16 32 H 0.08 2.51 8.13 -2.39 -0.02 2.49 16 33 H 0.03 1.30 6.46 -2.38 -0.02 1.29 16 34 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.01 0.62 8.12 -2.39 -0.02 0.60 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.03 1.19 6.95 -2.39 -0.02 1.18 16 39 H 0.07 2.96 8.13 -2.39 -0.02 2.94 16 40 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 41 H 0.06 2.00 7.87 -2.39 -0.02 1.98 16 Total: -1.00 -69.22 359.07 0.55 -68.67 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: 1.07 Total: 4.10 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 7.70 Total: 31.53 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -9.90 Total: -129.52 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.27 Total: -22.55 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: 0.87 SS G_CDS: -0.08 Total: 0.79 kcal Total: -69.22 0.55 -68.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056447.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.671 kcal (2) G-P(sol) polarization free energy of solvation -69.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds