Wall clock time and date at job start Sat Apr 11 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48338 * 111.00188 * 2 1 4 4 C 1.51406 * 103.56632 * 92.76029 * 3 2 1 5 5 C 1.37765 * 132.17403 * 196.80880 * 4 3 2 6 6 C 1.38953 * 119.94487 * 179.62464 * 5 4 3 7 7 N 1.39988 * 120.09098 * 179.97438 * 6 5 4 8 8 C 1.38205 * 119.99657 * 173.35597 * 7 6 5 9 9 C 1.39507 * 120.00226 * 300.24341 * 8 7 6 10 10 H 1.07999 * 119.99678 * 151.39361 * 9 8 7 11 11 C 1.41830 * 119.99990 * 331.39735 * 9 8 7 12 12 N 1.29794 * 119.99732 * 168.38498 * 11 9 8 13 13 Si 1.86804 * 120.00150 * 348.38457 * 11 9 8 14 14 H 1.48501 * 109.46872 * 89.20775 * 13 11 9 15 15 H 1.48497 * 109.47292 * 209.20984 * 13 11 9 16 16 H 1.48499 * 109.47043 * 329.21215 * 13 11 9 17 17 C 1.40742 * 119.99651 * 120.24938 * 8 7 6 18 18 C 1.43194 * 119.99854 * 174.92310 * 17 8 7 19 19 N 9.63969 * 110.43443 * 259.05349 * 3 1 2 20 20 C 1.43195 * 119.99844 * 354.64521 * 17 8 7 21 21 N 8.48730 * 121.98107 * 44.14736 * 2 1 3 22 22 C 1.38913 * 119.82105 * 0.21526 * 6 5 4 23 23 C 1.37951 * 120.16529 * 359.55800 * 22 6 5 24 24 N 1.48029 * 119.92220 * 180.31003 * 23 22 6 25 25 O 1.31690 * 119.99812 * 5.24877 * 24 23 22 26 26 O 1.31698 * 119.99566 * 185.24192 * 24 23 22 27 27 C 1.39079 * 107.35705 * 16.59248 * 4 3 2 28 28 N 1.40246 * 109.59661 * 0.61965 * 27 4 3 29 29 H 1.08999 * 109.46902 * 59.99968 * 1 2 3 30 30 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46911 * 300.00178 * 1 2 3 32 32 H 1.08997 * 110.60566 * 334.23365 * 3 2 1 33 33 H 1.09006 * 110.60139 * 211.27564 * 3 2 1 34 34 H 1.08002 * 120.03243 * 359.64600 * 5 4 3 35 35 H 0.96992 * 119.99840 * 353.36255 * 7 6 5 36 36 H 0.97009 * 119.99964 * 179.97438 * 12 11 9 37 37 H 1.07998 * 119.92356 * 179.84196 * 22 6 5 38 38 H 1.00897 * 110.99878 * 103.50975 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0007 1.3848 0.0000 4 6 2.1941 1.6910 1.4701 5 6 2.3672 2.8747 2.1534 6 6 2.5171 2.8626 3.5348 7 7 2.6937 4.0635 4.2321 8 6 2.7049 4.0648 5.6141 9 6 1.5916 3.6101 6.3212 10 1 1.7156 3.1747 7.3018 11 6 0.2970 3.7196 5.7524 12 7 -0.7058 3.1017 6.2977 13 14 0.0351 4.7530 4.2185 14 1 0.2408 3.9105 3.0130 15 1 -1.3484 5.2924 4.2152 16 1 1.0049 5.8775 4.2077 17 6 3.8396 4.5249 6.3081 18 6 3.8122 4.6288 7.7360 19 7 3.7917 4.7107 8.8687 20 6 5.0234 4.8835 5.5867 21 7 5.9642 5.1657 5.0142 22 6 2.4962 1.6552 4.2214 23 6 2.3182 0.4711 3.5363 24 7 2.2900 -0.8119 4.2741 25 8 2.3308 -0.8154 5.5904 26 8 2.2239 -1.9496 3.6141 27 6 2.1708 0.4795 2.1528 28 7 1.9933 -0.5710 1.2408 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2804 2.0722 -0.4435 33 1 2.9523 1.4304 -0.5297 34 1 2.3860 3.8113 1.6160 35 1 2.8080 4.8946 3.7454 36 1 -1.5913 3.1768 5.9088 37 1 2.6151 1.6437 5.2947 38 1 2.8617 -1.0576 1.0763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:22 Heat of formation + Delta-G solvation = 173.237992 kcal Electronic energy + Delta-G solvation = -29178.709237 eV Core-core repulsion = 25027.654280 eV Total energy + Delta-G solvation = -4151.054957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38881 -39.09732 -38.49228 -36.56577 -35.29307 -34.92223 -34.18962 -34.04132 -32.66111 -31.55496 -30.86252 -28.43116 -27.61390 -27.17517 -26.15593 -22.89830 -22.58980 -21.86293 -21.05042 -19.37175 -18.46232 -17.98603 -17.56995 -17.28847 -16.90710 -16.47199 -16.21818 -15.85283 -15.51144 -15.44486 -14.85757 -14.19536 -13.87552 -13.57064 -13.49728 -13.20149 -13.09263 -12.94114 -12.80293 -12.54607 -12.22073 -12.05873 -11.99651 -11.84739 -11.76590 -11.74057 -11.38040 -11.17531 -10.99991 -10.90333 -10.78632 -10.66238 -10.32298 -10.24753 -9.79019 -9.49422 -9.28421 -8.51428 -7.96917 -7.39661 -5.65514 -0.44555 0.84802 1.21323 1.37607 1.79848 2.42458 2.57874 2.60291 2.74242 3.13163 3.20376 3.21433 3.62382 3.81587 3.84475 3.98838 4.02683 4.12961 4.45775 4.67228 4.78325 4.85075 4.91355 5.02889 5.13632 5.16339 5.27396 5.28459 5.48368 5.63201 5.66668 5.73995 5.87530 5.95195 6.14549 6.19411 6.22982 6.61336 6.71246 6.78590 6.96234 7.09040 7.27395 7.42271 7.58088 7.89612 8.68654 8.94440 8.97945 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.004728 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.185272 B = 5920.179627 C = 6145.321252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.330 5.330 3 C 0.049 3.951 4 C -0.135 4.135 5 C -0.093 4.093 6 C 0.210 3.790 7 N -0.681 5.681 8 C 0.324 3.676 9 C -0.356 4.356 10 H 0.127 0.873 11 C 0.071 3.929 12 N -0.713 5.713 13 Si 0.918 3.082 14 H -0.251 1.251 15 H -0.281 1.281 16 H -0.247 1.247 17 C -0.285 4.285 18 C 0.319 3.681 19 N -0.515 5.515 20 C 0.305 3.695 21 N -0.525 5.525 22 C -0.082 4.082 23 C 0.049 3.951 24 N -0.016 5.016 25 O -0.172 6.172 26 O -0.161 6.161 27 C 0.075 3.925 28 N -0.452 5.452 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.142 0.858 35 H 0.409 0.591 36 H 0.307 0.693 37 H 0.179 0.821 38 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 -2.004 -16.365 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.141 5.141 3 C -0.080 4.080 4 C -0.141 4.141 5 C -0.117 4.117 6 C 0.107 3.893 7 N -0.308 5.308 8 C 0.222 3.778 9 C -0.383 4.383 10 H 0.145 0.855 11 C -0.162 4.162 12 N -0.330 5.330 13 Si 0.742 3.258 14 H -0.175 1.175 15 H -0.207 1.207 16 H -0.171 1.171 17 C -0.302 4.302 18 C 0.010 3.990 19 N -0.196 5.196 20 C -0.002 4.002 21 N -0.207 5.207 22 C -0.106 4.106 23 C -0.041 4.041 24 N 0.463 4.537 25 O -0.363 6.363 26 O -0.357 6.357 27 C -0.029 4.029 28 N -0.176 5.176 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.248 0.752 36 H 0.120 0.880 37 H 0.196 0.804 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.164 -1.690 -15.863 16.487 hybrid contribution -0.318 1.163 -0.176 1.219 sum -4.482 -0.526 -16.039 16.662 Atomic orbital electron populations 1.22677 0.85731 1.03896 1.01272 1.68604 1.10884 1.13962 1.20667 1.22533 1.03072 0.91261 0.91157 1.21171 1.04297 0.92505 0.96096 1.20162 1.01400 0.98259 0.91847 1.17163 0.96061 0.86026 0.90043 1.42279 1.76461 1.06532 1.05524 1.16828 0.91463 0.90517 0.79013 1.20509 0.88720 1.25106 1.04015 0.85511 1.26847 0.95362 0.94600 0.99432 1.69151 1.02578 1.25694 1.35603 0.86135 0.78992 0.80884 0.79771 1.17518 1.20742 1.17105 1.12721 0.92611 1.41253 0.83657 1.24572 0.92241 0.90959 0.91223 1.81086 1.09248 1.17109 1.12165 1.25234 0.91696 0.90752 0.92559 1.81134 1.11369 1.18164 1.09998 1.20733 0.98714 0.87696 1.03463 1.19312 1.14717 0.82470 0.87626 1.50310 0.96405 1.03753 1.03217 1.96324 1.55523 1.96087 0.88390 1.96251 1.54419 1.16470 1.68532 1.19308 1.00159 0.92794 0.90620 1.61807 1.34343 1.20023 1.01468 0.89995 0.89598 0.94188 0.88347 0.87169 0.84000 0.75217 0.88040 0.80387 0.78735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.71 60.07 0.58 0.70 16 2 N -0.33 -3.29 6.35 -120.91 -0.77 -4.06 16 3 C 0.05 0.42 6.96 -3.83 -0.03 0.39 16 4 C -0.13 -1.55 6.20 -104.14 -0.65 -2.20 16 5 C -0.09 -1.09 8.61 -39.49 -0.34 -1.43 16 6 C 0.21 3.05 4.51 -83.62 -0.38 2.67 16 7 N -0.68 -10.28 2.23 -8.12 -0.02 -10.30 16 8 C 0.32 5.80 4.44 -83.57 -0.37 5.43 16 9 C -0.36 -6.94 7.17 -37.74 -0.27 -7.21 16 10 H 0.13 2.78 7.50 -52.49 -0.39 2.38 16 11 C 0.07 1.32 5.38 -17.04 -0.09 1.23 16 12 N -0.71 -14.08 13.88 55.65 0.77 -13.31 16 13 Si 0.92 13.98 24.39 -169.99 -4.15 9.83 16 14 H -0.25 -3.46 5.42 56.52 0.31 -3.16 16 15 H -0.28 -4.41 7.11 56.52 0.40 -4.00 16 16 H -0.25 -3.58 6.56 56.52 0.37 -3.21 16 17 C -0.28 -5.59 5.87 -105.10 -0.62 -6.20 16 18 C 0.32 6.92 14.05 -22.48 -0.32 6.60 16 19 N -0.51 -11.91 18.54 41.83 0.78 -11.13 16 20 C 0.31 6.13 14.81 -22.45 -0.33 5.80 16 21 N -0.52 -11.05 18.54 41.87 0.78 -10.28 16 22 C -0.08 -1.36 8.37 -39.44 -0.33 -1.69 16 23 C 0.05 0.80 6.90 -79.71 -0.55 0.25 16 24 N -0.02 -0.30 4.98 34.08 0.17 -0.13 16 25 O -0.17 -3.49 19.15 -31.56 -0.60 -4.09 16 26 O -0.16 -2.92 18.61 -31.57 -0.59 -3.51 16 27 C 0.07 1.03 6.33 -83.36 -0.53 0.50 16 28 N -0.45 -5.55 6.16 32.60 0.20 -5.35 16 29 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.43 7.98 -51.93 -0.41 0.02 16 32 H 0.10 0.66 7.78 -51.93 -0.40 0.25 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.41 5.36 7.80 -40.82 -0.32 5.04 16 36 H 0.31 5.39 8.27 -40.82 -0.34 5.05 16 37 H 0.18 3.27 5.72 -52.49 -0.30 2.97 16 38 H 0.38 4.25 9.01 -173.89 -1.57 2.69 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -25.81 347.74 -6.75 -32.56 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -4.35 Total: 9.68 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -4.21 Total: 4.84 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.91 Total: -54.55 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -1.19 Total: -7.60 kcal Atomic # 14 Polarization: 13.98 SS G_CDS: -4.15 Total: 9.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -25.81 -6.75 -32.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.798 kcal (2) G-P(sol) polarization free energy of solvation -25.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds