Wall clock time and date at job start Sat Apr 11 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48338 * 111.00188 * 2 1 4 4 C 1.51406 * 103.56632 * 92.76029 * 3 2 1 5 5 C 1.37765 * 132.17403 * 196.80880 * 4 3 2 6 6 C 1.38953 * 119.94487 * 179.62464 * 5 4 3 7 7 N 1.39988 * 120.09098 * 179.97438 * 6 5 4 8 8 C 1.38205 * 119.99657 * 173.35597 * 7 6 5 9 9 C 1.39507 * 120.00226 * 300.24341 * 8 7 6 10 10 H 1.07999 * 119.99678 * 151.39361 * 9 8 7 11 11 C 1.41830 * 119.99990 * 331.39735 * 9 8 7 12 12 N 1.29794 * 119.99732 * 168.38498 * 11 9 8 13 13 Si 1.86804 * 120.00150 * 348.38457 * 11 9 8 14 14 H 1.48501 * 109.46872 * 89.20775 * 13 11 9 15 15 H 1.48497 * 109.47292 * 209.20984 * 13 11 9 16 16 H 1.48499 * 109.47043 * 329.21215 * 13 11 9 17 17 C 1.40742 * 119.99651 * 120.24938 * 8 7 6 18 18 C 1.43194 * 119.99854 * 174.92310 * 17 8 7 19 19 N 9.63969 * 110.43443 * 259.05349 * 3 1 2 20 20 C 1.43195 * 119.99844 * 354.64521 * 17 8 7 21 21 N 8.48730 * 121.98107 * 44.14736 * 2 1 3 22 22 C 1.38913 * 119.82105 * 0.21526 * 6 5 4 23 23 C 1.37951 * 120.16529 * 359.55800 * 22 6 5 24 24 N 1.48029 * 119.92220 * 180.31003 * 23 22 6 25 25 O 1.31690 * 119.99812 * 5.24877 * 24 23 22 26 26 O 1.31698 * 119.99566 * 185.24192 * 24 23 22 27 27 C 1.39079 * 107.35705 * 16.59248 * 4 3 2 28 28 N 1.40246 * 109.59661 * 0.61965 * 27 4 3 29 29 H 1.08999 * 109.46902 * 59.99968 * 1 2 3 30 30 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46911 * 300.00178 * 1 2 3 32 32 H 1.08997 * 110.60566 * 334.23365 * 3 2 1 33 33 H 1.09006 * 110.60139 * 211.27564 * 3 2 1 34 34 H 1.08002 * 120.03243 * 359.64600 * 5 4 3 35 35 H 0.96992 * 119.99840 * 353.36255 * 7 6 5 36 36 H 0.97009 * 119.99964 * 179.97438 * 12 11 9 37 37 H 1.07998 * 119.92356 * 179.84196 * 22 6 5 38 38 H 1.00897 * 110.99878 * 103.50975 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0007 1.3848 0.0000 4 6 2.1941 1.6910 1.4701 5 6 2.3672 2.8747 2.1534 6 6 2.5171 2.8626 3.5348 7 7 2.6937 4.0635 4.2321 8 6 2.7049 4.0648 5.6141 9 6 1.5916 3.6101 6.3212 10 1 1.7156 3.1747 7.3018 11 6 0.2970 3.7196 5.7524 12 7 -0.7058 3.1017 6.2977 13 14 0.0351 4.7530 4.2185 14 1 0.2408 3.9105 3.0130 15 1 -1.3484 5.2924 4.2152 16 1 1.0049 5.8775 4.2077 17 6 3.8396 4.5249 6.3081 18 6 3.8122 4.6288 7.7360 19 7 3.7917 4.7107 8.8687 20 6 5.0234 4.8835 5.5867 21 7 5.9642 5.1657 5.0142 22 6 2.4962 1.6552 4.2214 23 6 2.3182 0.4711 3.5363 24 7 2.2900 -0.8119 4.2741 25 8 2.3308 -0.8154 5.5904 26 8 2.2239 -1.9496 3.6141 27 6 2.1708 0.4795 2.1528 28 7 1.9933 -0.5710 1.2408 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2804 2.0722 -0.4435 33 1 2.9523 1.4304 -0.5297 34 1 2.3860 3.8113 1.6160 35 1 2.8080 4.8946 3.7454 36 1 -1.5913 3.1768 5.9088 37 1 2.6151 1.6437 5.2947 38 1 2.8617 -1.0576 1.0763 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082640.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:22 Heat of formation + Delta-G solvation = 156.732023 kcal Electronic energy + Delta-G solvation = -29179.424990 eV Core-core repulsion = 25027.654280 eV Total energy + Delta-G solvation = -4151.770710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.42975 -40.25959 -39.85699 -37.93972 -36.77246 -36.63119 -35.58566 -35.47324 -33.80890 -32.59369 -32.06968 -29.57831 -29.12161 -28.14207 -27.36655 -23.88860 -23.79922 -22.92321 -22.34432 -20.85011 -19.76095 -19.35028 -19.01056 -18.44013 -18.11638 -17.76670 -17.31216 -17.05746 -16.73459 -16.49362 -15.72645 -15.17412 -15.06922 -14.87812 -14.65034 -14.53441 -14.39702 -14.28850 -14.15406 -13.59022 -13.55005 -13.48862 -13.29947 -13.04795 -13.03480 -12.86999 -12.79417 -12.76626 -12.48216 -12.34699 -12.18183 -11.84225 -11.82320 -11.43250 -10.85361 -10.52190 -10.29320 -9.81826 -9.39011 -8.61033 -7.26728 -1.81553 -0.23966 -0.00397 0.09382 0.37835 1.16274 1.36887 1.45682 1.77825 1.91429 1.92380 2.02928 2.09840 2.15383 2.44102 2.53187 3.01367 3.10790 3.27347 3.44225 3.57989 3.69256 3.70781 3.93815 4.18829 4.29562 4.33251 4.50747 4.54328 4.62893 4.63587 4.65710 4.71975 4.82011 4.95302 5.01956 5.30821 5.47500 5.49657 5.64513 5.68680 5.72616 5.89501 5.95782 6.28967 6.53753 7.05568 7.23303 7.59396 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011108 B = 0.004728 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.185272 B = 5920.179627 C = 6145.321252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.326 5.326 3 C 0.053 3.947 4 C -0.125 4.125 5 C -0.063 4.063 6 C 0.199 3.801 7 N -0.676 5.676 8 C 0.349 3.651 9 C -0.367 4.367 10 H 0.085 0.915 11 C 0.041 3.959 12 N -0.753 5.753 13 Si 0.961 3.039 14 H -0.219 1.219 15 H -0.284 1.284 16 H -0.228 1.228 17 C -0.296 4.296 18 C 0.323 3.677 19 N -0.551 5.551 20 C 0.318 3.682 21 N -0.537 5.537 22 C -0.105 4.105 23 C 0.025 3.975 24 N -0.010 5.010 25 O -0.259 6.259 26 O -0.138 6.138 27 C 0.086 3.914 28 N -0.464 5.464 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.022 0.978 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.191 0.809 35 H 0.424 0.576 36 H 0.316 0.684 37 H 0.145 0.855 38 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.414 -0.366 -22.204 22.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.137 5.137 3 C -0.075 4.075 4 C -0.131 4.131 5 C -0.086 4.086 6 C 0.097 3.903 7 N -0.306 5.306 8 C 0.245 3.755 9 C -0.394 4.394 10 H 0.103 0.897 11 C -0.189 4.189 12 N -0.371 5.371 13 Si 0.779 3.221 14 H -0.142 1.142 15 H -0.211 1.211 16 H -0.150 1.150 17 C -0.314 4.314 18 C 0.015 3.985 19 N -0.234 5.234 20 C 0.010 3.990 21 N -0.219 5.219 22 C -0.130 4.130 23 C -0.067 4.067 24 N 0.462 4.538 25 O -0.430 6.430 26 O -0.344 6.344 27 C -0.019 4.019 28 N -0.190 5.190 29 H 0.134 0.866 30 H 0.098 0.902 31 H 0.041 0.959 32 H 0.151 0.849 33 H 0.154 0.846 34 H 0.208 0.792 35 H 0.266 0.734 36 H 0.129 0.871 37 H 0.162 0.838 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.673 -0.042 -21.551 22.052 hybrid contribution -0.242 0.489 1.374 1.479 sum -4.915 0.447 -20.177 20.771 Atomic orbital electron populations 1.22823 0.85140 1.03957 1.02019 1.68677 1.11401 1.15206 1.18445 1.22847 1.05317 0.90585 0.88796 1.21650 1.02492 0.91159 0.97756 1.20653 0.97433 1.00357 0.90202 1.17258 0.97161 0.84664 0.91245 1.42051 1.77014 1.07523 1.04039 1.16453 0.89851 0.88563 0.80595 1.20383 0.90495 1.25677 1.02865 0.89654 1.27738 0.94187 0.95000 1.01958 1.69186 1.03459 1.27060 1.37371 0.85538 0.79148 0.80253 0.77124 1.14237 1.21106 1.15031 1.12792 0.93362 1.42499 0.82734 1.24994 0.91408 0.90272 0.91795 1.81059 1.10306 1.18831 1.13208 1.25081 0.91374 0.90281 0.92220 1.81137 1.11401 1.18887 1.10515 1.20503 1.01078 0.89112 1.02258 1.19525 1.17340 0.81164 0.88627 1.50627 0.95555 1.04526 1.03094 1.96339 1.60852 1.96354 0.89452 1.96187 1.52352 1.17699 1.68199 1.19579 0.97889 0.94732 0.89662 1.61737 1.34512 1.20087 1.02657 0.86561 0.90184 0.95922 0.84930 0.84573 0.79159 0.73374 0.87086 0.83781 0.77773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.71 127.69 1.24 1.37 16 2 N -0.33 -4.86 6.35 -536.43 -3.41 -8.27 16 3 C 0.05 0.53 6.96 85.50 0.59 1.13 16 4 C -0.12 -2.19 6.20 -19.55 -0.12 -2.31 16 5 C -0.06 -1.12 8.61 22.33 0.19 -0.93 16 6 C 0.20 5.24 4.51 38.17 0.17 5.41 16 7 N -0.68 -18.79 2.23 -179.59 -0.40 -19.19 16 8 C 0.35 12.57 4.44 39.06 0.17 12.74 16 9 C -0.37 -15.02 7.17 23.46 0.17 -14.85 16 10 H 0.09 4.14 7.50 -2.91 -0.02 4.12 16 11 C 0.04 1.53 5.38 85.88 0.46 2.00 16 12 N -0.75 -30.93 13.88 22.15 0.31 -30.62 16 13 Si 0.96 25.91 24.39 68.60 1.67 27.58 16 14 H -0.22 -4.75 5.42 99.48 0.54 -4.21 16 15 H -0.28 -7.91 7.11 99.48 0.71 -7.21 16 16 H -0.23 -5.45 6.56 99.48 0.65 -4.80 16 17 C -0.30 -11.78 5.87 -20.18 -0.12 -11.90 16 18 C 0.32 14.62 14.05 88.33 1.24 15.86 16 19 N -0.55 -26.80 18.54 19.00 0.35 -26.45 16 20 C 0.32 12.54 14.81 88.32 1.31 13.85 16 21 N -0.54 -21.91 18.54 19.01 0.35 -21.56 16 22 C -0.11 -3.53 8.37 22.36 0.19 -3.34 16 23 C 0.02 0.81 6.90 36.52 0.25 1.07 16 24 N -0.01 -0.38 4.98 -46.10 -0.23 -0.61 16 25 O -0.26 -11.74 19.15 3.53 0.07 -11.67 16 26 O -0.14 -5.08 18.61 3.52 0.07 -5.02 16 27 C 0.09 2.12 6.33 38.21 0.24 2.37 16 28 N -0.46 -9.95 6.16 -50.77 -0.31 -10.26 16 29 H 0.12 0.82 8.10 -2.39 -0.02 0.80 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.02 0.39 7.98 -2.38 -0.02 0.37 16 32 H 0.13 0.61 7.78 -2.39 -0.02 0.59 16 33 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.42 9.26 7.80 -92.71 -0.72 8.53 16 36 H 0.32 11.36 8.27 -92.70 -0.77 10.59 16 37 H 0.14 5.83 5.72 -2.91 -0.02 5.81 16 38 H 0.39 7.53 9.01 -204.20 -1.84 5.69 16 Total: -1.00 -62.53 347.74 2.88 -59.65 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -1.59 Total: 23.95 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 5.99 Total: 22.45 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -3.34 Total: -116.95 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: 0.13 Total: -16.68 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: 1.67 Total: 27.58 kcal Total: -62.53 2.88 -59.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082640.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.386 kcal (2) G-P(sol) polarization free energy of solvation -62.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds