Wall clock time and date at job start Sat Apr 11 2020 05:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.00144 * 2 1 4 4 C 1.54328 * 109.88312 * 121.09739 * 2 1 3 5 5 H 1.08999 * 110.72156 * 215.76376 * 4 2 1 6 6 N 1.46893 * 110.71787 * 338.86213 * 4 2 1 7 7 C 1.46907 * 111.00116 * 198.18351 * 6 4 2 8 8 C 1.50697 * 109.47090 * 179.97438 * 7 6 4 9 9 C 1.38423 * 122.54204 * 90.00388 * 8 7 6 10 10 C 1.33386 * 114.92483 * 180.22490 * 9 8 7 11 11 S 1.75890 * 109.59099 * 359.62847 * 10 9 8 12 12 C 1.33386 * 122.53659 * 269.97303 * 8 7 6 13 13 C 1.55160 * 102.94104 * 97.22490 * 4 2 1 14 14 C 1.54906 * 101.58191 * 35.50054 * 13 4 2 15 15 N 1.47024 * 109.88372 * 238.90664 * 2 1 3 16 16 C 1.34771 * 125.65031 * 59.48717 * 15 2 1 17 17 O 1.21287 * 120.00083 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00456 * 180.02562 * 16 15 2 19 19 S 1.80994 * 109.47602 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00290 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99846 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00021 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00479 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47174 * 90.00146 * 24 22 20 26 26 H 1.48497 * 109.47415 * 210.00320 * 24 22 20 27 27 H 1.48502 * 109.47066 * 330.00428 * 24 22 20 28 28 H 1.08998 * 109.47103 * 305.17575 * 1 2 3 29 29 H 1.09003 * 109.46994 * 65.17190 * 1 2 3 30 30 H 1.08996 * 109.47284 * 185.17416 * 1 2 3 31 31 H 1.00909 * 111.00059 * 322.13487 * 6 4 2 32 32 H 1.09000 * 109.47032 * 59.99904 * 7 6 4 33 33 H 1.09000 * 109.46713 * 300.00243 * 7 6 4 34 34 H 1.08006 * 122.53429 * 359.94573 * 9 8 7 35 35 H 1.07992 * 125.20739 * 179.75219 * 10 9 8 36 36 H 1.08000 * 125.20805 * 359.97438 * 12 8 7 37 37 H 1.08995 * 111.00181 * 153.58055 * 13 4 2 38 38 H 1.08999 * 111.00131 * 277.42922 * 13 4 2 39 39 H 1.08997 * 110.36738 * 204.15055 * 14 13 4 40 40 H 1.08999 * 110.45814 * 81.88044 * 14 13 4 41 41 H 1.08999 * 109.47003 * 300.00446 * 18 16 15 42 42 H 1.09000 * 109.47132 * 59.99538 * 18 16 15 43 43 H 0.96999 * 120.00338 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9639 -0.2814 1.6201 6 7 1.0264 -0.8028 2.2903 7 6 1.6218 -1.1117 3.5973 8 6 0.5390 -1.1572 4.6444 9 6 -0.1436 -2.3195 4.9596 10 6 -1.0745 -2.1857 5.9056 11 16 -1.1151 -0.5173 6.4613 12 6 0.1661 -0.0807 5.3380 13 6 2.3518 -2.1695 0.6923 14 6 2.8567 -1.8498 -0.7368 15 7 2.0300 -0.7140 -1.1840 16 6 1.7742 -0.3852 -2.4657 17 8 1.0770 0.5745 -2.7180 18 6 2.3546 -1.2100 -3.5855 19 16 1.8330 -0.5208 -5.1756 20 6 2.6311 -1.6448 -6.2730 21 1 3.2245 -2.4560 -5.8776 22 6 2.4973 -1.4878 -7.6455 23 7 1.7745 -0.4988 -8.1275 24 14 3.3440 -2.6790 -8.8089 25 1 2.4349 -3.8165 -9.1007 26 1 3.6828 -1.9791 -10.0739 27 1 4.5874 -3.1887 -8.1768 28 1 -0.3633 0.5920 0.8400 29 1 -0.3633 0.4315 -0.9327 30 1 -0.3633 -1.0234 0.0927 31 1 0.5020 0.0585 2.3263 32 1 2.3465 -0.3404 3.8579 33 1 2.1221 -2.0789 3.5491 34 1 0.0590 -3.2622 4.4732 35 1 -1.7052 -2.9805 6.2753 36 1 0.5870 0.9078 5.2276 37 1 3.1269 -2.6619 1.2795 38 1 1.4451 -2.7736 0.6603 39 1 2.7087 -2.7080 -1.3923 40 1 3.9092 -1.5674 -0.7148 41 1 3.4426 -1.1948 -3.5217 42 1 2.0002 -2.2374 -3.5014 43 1 1.6813 -0.3889 -9.0867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178156472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:27 Heat of formation + Delta-G solvation = 9.395640 kcal Electronic energy + Delta-G solvation = -24067.729329 eV Core-core repulsion = 20559.014049 eV Total energy + Delta-G solvation = -3508.715280 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.22987 -38.82314 -37.52910 -34.84878 -32.41881 -31.72768 -31.02532 -29.79159 -28.37421 -26.41628 -25.48232 -25.04276 -23.01165 -22.87427 -20.28008 -19.22670 -18.93758 -18.07113 -17.70926 -16.65018 -16.32570 -15.97428 -15.50820 -15.15075 -14.88313 -14.79026 -14.19153 -13.92135 -13.77085 -13.36786 -13.32395 -13.06492 -13.03308 -12.60069 -12.52956 -12.37440 -12.33869 -12.21094 -11.85032 -11.61640 -11.53610 -11.09192 -11.05463 -11.01492 -11.00637 -10.76190 -10.71807 -9.80320 -9.29959 -9.20745 -9.05565 -8.86381 -8.69751 -8.47302 -8.21587 -6.48635 -6.20487 -3.90927 0.63977 1.30707 1.62988 2.30262 2.90924 3.10209 3.23029 3.26511 3.30952 3.61724 3.96339 4.18579 4.22821 4.46182 4.49262 4.63253 4.83737 4.94311 5.02894 5.05416 5.09481 5.14609 5.16631 5.25101 5.35030 5.40940 5.50008 5.54304 5.58703 5.65602 5.68676 5.75506 5.90496 5.99971 6.02189 6.10888 6.12692 6.16183 6.39545 6.59050 6.67946 6.99082 7.60561 7.72255 8.36323 8.60659 9.24725 10.86921 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.033294 B = 0.001824 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.799395 B =15346.012961 C =15650.179486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 H 0.070 0.930 4 C 0.077 3.923 5 H 0.059 0.941 6 N -0.670 5.670 7 C 0.117 3.883 8 C -0.095 4.095 9 C -0.115 4.115 10 C -0.214 4.214 11 S 0.090 5.910 12 C -0.210 4.210 13 C -0.120 4.120 14 C 0.100 3.900 15 N -0.620 5.620 16 C 0.550 3.450 17 O -0.514 6.514 18 C -0.147 4.147 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.347 0.653 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.506 -3.386 30.906 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.088 0.912 4 C -0.034 4.034 5 H 0.077 0.923 6 N -0.303 5.303 7 C -0.014 4.014 8 C -0.108 4.108 9 C -0.146 4.146 10 C -0.350 4.350 11 S 0.354 5.646 12 C -0.346 4.346 13 C -0.158 4.158 14 C -0.024 4.024 15 N -0.358 5.358 16 C 0.339 3.661 17 O -0.388 6.388 18 C -0.297 4.297 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.168 0.832 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.665 -1.688 31.236 31.395 hybrid contribution 2.617 -1.845 -1.221 3.427 sum -0.048 -3.532 30.015 30.222 Atomic orbital electron populations 1.21988 0.94040 1.02794 1.02447 1.21470 0.95589 0.95378 0.84102 0.91190 1.22573 0.93250 0.96588 0.90962 0.92278 1.60676 1.25049 1.41398 1.03207 1.20625 0.92671 1.01695 0.86433 1.18831 1.00227 0.92673 0.99101 1.20074 0.96664 0.99559 0.98259 1.25612 1.05454 0.99647 1.04259 1.84330 1.36153 1.04141 1.39996 1.25517 1.03446 1.02808 1.02832 1.22828 1.02159 0.96318 0.94508 1.22298 0.94860 0.89799 0.95465 1.48502 1.51892 1.30715 1.04668 1.19992 0.80055 0.84754 0.81333 1.90690 1.37346 1.28192 1.82573 1.23510 1.03709 1.02548 0.99947 1.85389 1.67083 1.40292 0.90611 1.22860 1.36380 1.15945 0.93105 0.90950 1.24990 0.95281 0.95973 0.97351 1.70018 1.37403 1.29237 1.13623 0.86171 0.79514 0.80231 0.79599 1.20269 1.20757 1.19704 0.92399 0.90895 0.91642 0.83217 0.94253 0.89815 0.84055 0.81910 0.82092 0.90370 0.89406 0.90157 0.91487 0.89388 0.89335 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.31 37.15 0.31 -1.64 16 2 C 0.14 1.68 3.41 -66.95 -0.23 1.45 16 3 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.08 0.66 3.10 -65.88 -0.20 0.46 16 5 H 0.06 0.47 7.93 -51.93 -0.41 0.05 16 6 N -0.67 -5.22 5.51 -106.05 -0.58 -5.80 16 7 C 0.12 0.77 5.79 -4.97 -0.03 0.74 16 8 C -0.10 -0.69 5.31 -106.25 -0.56 -1.25 16 9 C -0.12 -0.83 9.98 -41.21 -0.41 -1.25 16 10 C -0.21 -1.45 11.23 29.04 0.33 -1.12 16 11 S 0.09 0.61 23.34 -107.50 -2.51 -1.90 16 12 C -0.21 -1.43 10.98 29.04 0.32 -1.12 16 13 C -0.12 -1.01 6.62 -24.58 -0.16 -1.17 16 14 C 0.10 1.07 6.69 -2.53 -0.02 1.05 16 15 N -0.62 -9.00 3.08 -163.02 -0.50 -9.50 16 16 C 0.55 10.69 7.64 -10.99 -0.08 10.61 16 17 O -0.51 -11.87 14.69 5.55 0.08 -11.79 16 18 C -0.15 -3.04 5.16 36.01 0.19 -2.85 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H 0.06 0.59 6.61 -51.93 -0.34 0.25 16 29 H 0.07 1.18 6.58 -51.93 -0.34 0.83 16 30 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 31 H 0.35 2.72 6.67 -39.29 -0.26 2.45 16 32 H 0.04 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.08 0.52 8.05 -51.93 -0.42 0.10 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 35 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.86 7.47 -51.93 -0.39 0.47 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.71 7.85 -51.92 -0.41 1.30 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -33.93 378.85 -11.01 -44.94 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.34 Total: 0.40 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.36 Total: -9.10 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: -0.35 Total: -40.85 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.05 SS G_CDS: -4.72 Total: -5.77 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.93 -11.01 -44.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178156472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.340 kcal (2) G-P(sol) polarization free energy of solvation -33.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds