Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 110.00144 * 2 1 4 4 C 1.54328 * 109.88312 * 121.09739 * 2 1 3 5 5 H 1.08999 * 110.72156 * 215.76376 * 4 2 1 6 6 N 1.46893 * 110.71787 * 338.86213 * 4 2 1 7 7 C 1.46907 * 111.00116 * 198.18351 * 6 4 2 8 8 C 1.50697 * 109.47090 * 179.97438 * 7 6 4 9 9 C 1.38423 * 122.54204 * 90.00388 * 8 7 6 10 10 C 1.33386 * 114.92483 * 180.22490 * 9 8 7 11 11 S 1.75890 * 109.59099 * 359.62847 * 10 9 8 12 12 C 1.33386 * 122.53659 * 269.97303 * 8 7 6 13 13 C 1.55160 * 102.94104 * 97.22490 * 4 2 1 14 14 C 1.54906 * 101.58191 * 35.50054 * 13 4 2 15 15 N 1.47024 * 109.88372 * 238.90664 * 2 1 3 16 16 C 1.34771 * 125.65031 * 59.48717 * 15 2 1 17 17 O 1.21287 * 120.00083 * 0.02562 * 16 15 2 18 18 C 1.50700 * 120.00456 * 180.02562 * 16 15 2 19 19 S 1.80994 * 109.47602 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00290 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99846 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00021 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00479 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99926 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47174 * 90.00146 * 24 22 20 26 26 H 1.48497 * 109.47415 * 210.00320 * 24 22 20 27 27 H 1.48502 * 109.47066 * 330.00428 * 24 22 20 28 28 H 1.08998 * 109.47103 * 305.17575 * 1 2 3 29 29 H 1.09003 * 109.46994 * 65.17190 * 1 2 3 30 30 H 1.08996 * 109.47284 * 185.17416 * 1 2 3 31 31 H 1.00909 * 111.00059 * 322.13487 * 6 4 2 32 32 H 1.09000 * 109.47032 * 59.99904 * 7 6 4 33 33 H 1.09000 * 109.46713 * 300.00243 * 7 6 4 34 34 H 1.08006 * 122.53429 * 359.94573 * 9 8 7 35 35 H 1.07992 * 125.20739 * 179.75219 * 10 9 8 36 36 H 1.08000 * 125.20805 * 359.97438 * 12 8 7 37 37 H 1.08995 * 111.00181 * 153.58055 * 13 4 2 38 38 H 1.08999 * 111.00131 * 277.42922 * 13 4 2 39 39 H 1.08997 * 110.36738 * 204.15055 * 14 13 4 40 40 H 1.08999 * 110.45814 * 81.88044 * 14 13 4 41 41 H 1.08999 * 109.47003 * 300.00446 * 18 16 15 42 42 H 1.09000 * 109.47132 * 59.99538 * 18 16 15 43 43 H 0.96999 * 120.00338 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 2.9639 -0.2814 1.6201 6 7 1.0264 -0.8028 2.2903 7 6 1.6218 -1.1117 3.5973 8 6 0.5390 -1.1572 4.6444 9 6 -0.1436 -2.3195 4.9596 10 6 -1.0745 -2.1857 5.9056 11 16 -1.1151 -0.5173 6.4613 12 6 0.1661 -0.0807 5.3380 13 6 2.3518 -2.1695 0.6923 14 6 2.8567 -1.8498 -0.7368 15 7 2.0300 -0.7140 -1.1840 16 6 1.7742 -0.3852 -2.4657 17 8 1.0770 0.5745 -2.7180 18 6 2.3546 -1.2100 -3.5855 19 16 1.8330 -0.5208 -5.1756 20 6 2.6311 -1.6448 -6.2730 21 1 3.2245 -2.4560 -5.8776 22 6 2.4973 -1.4878 -7.6455 23 7 1.7745 -0.4988 -8.1275 24 14 3.3440 -2.6790 -8.8089 25 1 2.4349 -3.8165 -9.1007 26 1 3.6828 -1.9791 -10.0739 27 1 4.5874 -3.1887 -8.1768 28 1 -0.3633 0.5920 0.8400 29 1 -0.3633 0.4315 -0.9327 30 1 -0.3633 -1.0234 0.0927 31 1 0.5020 0.0585 2.3263 32 1 2.3465 -0.3404 3.8579 33 1 2.1221 -2.0789 3.5491 34 1 0.0590 -3.2622 4.4732 35 1 -1.7052 -2.9805 6.2753 36 1 0.5870 0.9078 5.2276 37 1 3.1269 -2.6619 1.2795 38 1 1.4451 -2.7736 0.6603 39 1 2.7087 -2.7080 -1.3923 40 1 3.9092 -1.5674 -0.7148 41 1 3.4426 -1.1948 -3.5217 42 1 2.0002 -2.2374 -3.5014 43 1 1.6813 -0.3889 -9.0867 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178156472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -12.283110 kcal Electronic energy + Delta-G solvation = -24068.669391 eV Core-core repulsion = 20559.014049 eV Total energy + Delta-G solvation = -3509.655341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33904 -39.53160 -38.61862 -35.70121 -34.58998 -32.76236 -31.95870 -30.68279 -29.55163 -27.66850 -27.11484 -25.83514 -24.03510 -23.42334 -21.22882 -20.32203 -19.62371 -19.54755 -18.59447 -18.04397 -17.29429 -16.89078 -16.83546 -16.30275 -16.24167 -16.00377 -15.67673 -15.00689 -14.64787 -14.51237 -14.42664 -13.88149 -13.78425 -13.73709 -13.61717 -13.30974 -13.19483 -13.12968 -12.99362 -12.90521 -12.87427 -12.62844 -12.53036 -12.28938 -11.84088 -11.72710 -11.60476 -11.54286 -11.14550 -10.84221 -10.28360 -9.72934 -9.68746 -9.40498 -9.22725 -8.68086 -8.34853 -6.13526 0.14309 0.82056 1.13841 1.23756 1.42548 1.44683 1.55926 1.58973 1.78924 2.09372 2.27202 2.99150 3.21646 3.30949 3.42387 3.66316 3.88270 4.03426 4.07698 4.15718 4.22197 4.30375 4.33864 4.43083 4.46362 4.52736 4.59899 4.63879 4.67274 4.74086 4.79100 4.90393 5.03005 5.07545 5.17654 5.27531 5.33540 5.41220 5.51421 5.54234 5.61767 6.06347 6.19429 6.35660 6.44598 7.06096 7.15146 8.74425 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.033294 B = 0.001824 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.799395 B =15346.012961 C =15650.179486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.063 0.937 4 C 0.092 3.908 5 H 0.078 0.922 6 N -0.674 5.674 7 C 0.121 3.879 8 C -0.103 4.103 9 C -0.128 4.128 10 C -0.221 4.221 11 S 0.082 5.918 12 C -0.216 4.216 13 C -0.108 4.108 14 C 0.088 3.912 15 N -0.612 5.612 16 C 0.546 3.454 17 O -0.563 6.563 18 C -0.119 4.119 19 S -0.151 6.151 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.268 1.268 26 H -0.277 1.277 27 H -0.257 1.257 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.346 0.654 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.149 0.851 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -5.448 32.830 33.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.081 0.919 4 C -0.018 4.018 5 H 0.096 0.904 6 N -0.308 5.308 7 C -0.009 4.009 8 C -0.116 4.116 9 C -0.158 4.158 10 C -0.356 4.356 11 S 0.346 5.654 12 C -0.352 4.352 13 C -0.147 4.147 14 C -0.034 4.034 15 N -0.347 5.347 16 C 0.335 3.665 17 O -0.441 6.441 18 C -0.271 4.271 19 S 0.077 5.923 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.181 1.181 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.167 0.833 35 H 0.195 0.805 36 H 0.191 0.809 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.801 -3.781 33.226 33.450 hybrid contribution 2.013 -1.194 -1.641 2.858 sum 1.212 -4.975 31.585 31.998 Atomic orbital electron populations 1.21868 0.94615 1.02570 1.01231 1.21691 0.95183 0.95559 0.84759 0.91927 1.22455 0.93800 0.96170 0.89397 0.90436 1.60666 1.24944 1.41463 1.03730 1.20634 0.92519 1.02448 0.85335 1.18956 1.00559 0.92700 0.99420 1.20272 0.96919 1.00033 0.98564 1.25872 1.05608 0.99940 1.04183 1.84362 1.36361 1.04492 1.40207 1.25744 1.03344 1.03455 1.02658 1.22808 1.02738 0.96072 0.93042 1.22678 0.95351 0.88400 0.96963 1.48453 1.51103 1.31497 1.03624 1.19736 0.79893 0.84156 0.82762 1.90673 1.39634 1.30194 1.83622 1.23305 1.04579 1.02835 0.96341 1.85579 1.68469 1.42493 0.95802 1.23191 1.36452 1.16040 0.93671 0.89913 1.26148 0.95832 0.97897 0.99323 1.70186 1.39037 1.31407 1.14150 0.84939 0.78676 0.77484 0.76787 1.19282 1.20263 1.18099 0.90000 0.95029 0.91923 0.83282 0.93212 0.88973 0.83337 0.80499 0.80863 0.87157 0.90218 0.89996 0.89513 0.87633 0.87758 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.31 71.98 0.60 -3.03 16 2 C 0.13 3.03 3.41 45.34 0.15 3.18 16 3 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 4 C 0.09 1.30 3.10 46.11 0.14 1.44 16 5 H 0.08 0.88 7.93 -2.39 -0.02 0.87 16 6 N -0.67 -8.59 5.51 -489.44 -2.70 -11.28 16 7 C 0.12 1.20 5.79 85.55 0.50 1.69 16 8 C -0.10 -1.26 5.31 -20.92 -0.11 -1.37 16 9 C -0.13 -1.60 9.98 21.22 0.21 -1.39 16 10 C -0.22 -2.65 11.23 66.72 0.75 -1.90 16 11 S 0.08 1.01 23.34 -56.49 -1.32 -0.31 16 12 C -0.22 -2.56 10.98 66.72 0.73 -1.83 16 13 C -0.11 -1.42 6.62 31.99 0.21 -1.21 16 14 C 0.09 1.64 6.69 86.85 0.58 2.22 16 15 N -0.61 -17.11 3.08 -788.06 -2.43 -19.54 16 16 C 0.55 21.51 7.64 87.66 0.67 22.18 16 17 O -0.56 -27.22 14.69 -3.05 -0.04 -27.26 16 18 C -0.12 -4.95 5.16 71.24 0.37 -4.59 16 19 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 20 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.73 5.49 84.86 0.47 1.19 16 23 N -0.91 -56.51 13.22 21.65 0.29 -56.22 16 24 Si 1.00 43.81 29.55 68.60 2.03 45.83 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 28 H 0.08 1.61 6.61 -2.39 -0.02 1.59 16 29 H 0.03 1.06 6.58 -2.39 -0.02 1.04 16 30 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 31 H 0.35 4.59 6.67 -89.69 -0.60 3.99 16 32 H 0.05 0.41 8.07 -2.39 -0.02 0.39 16 33 H 0.09 0.78 8.05 -2.39 -0.02 0.76 16 34 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.53 7.47 -2.39 -0.02 1.51 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 42 H 0.10 3.96 7.85 -2.40 -0.02 3.94 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -77.08 378.85 1.00 -76.08 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.42 Total: 16.68 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 5.92 Total: -14.27 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -4.84 Total: -87.04 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.04 Total: -27.26 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -7.55 SS G_CDS: -2.48 Total: -10.03 kcal Total: -77.08 1.00 -76.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178156472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.802 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds