Wall clock time and date at job start Sat Apr 11 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.77905 * 2 1 4 4 C 1.54937 * 110.72241 * 236.75025 * 2 1 3 5 5 N 1.48531 * 103.37331 * 204.30912 * 4 2 1 6 6 C 1.46908 * 110.99857 * 159.63431 * 5 4 2 7 7 C 1.50696 * 109.47292 * 189.99954 * 6 5 4 8 8 C 1.38420 * 122.54282 * 269.74320 * 7 6 5 9 9 C 1.33389 * 114.92220 * 179.76042 * 8 7 6 10 10 S 1.75881 * 109.59233 * 0.47589 * 9 8 7 11 11 C 1.33390 * 122.53720 * 90.02912 * 7 6 5 12 12 C 1.47901 * 105.82310 * 39.12709 * 5 4 2 13 13 C 1.53998 * 107.05580 * 334.66757 * 12 5 4 14 14 H 1.09000 * 110.30859 * 120.23836 * 13 12 5 15 15 N 1.46496 * 110.31004 * 242.30949 * 13 12 5 16 16 C 1.34774 * 119.99859 * 273.54886 * 15 13 12 17 17 O 1.21281 * 120.00059 * 359.97438 * 16 15 13 18 18 C 1.50710 * 119.99982 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.46946 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99635 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00208 * 359.97438 * 20 19 18 22 22 C 1.38799 * 119.99840 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00474 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99865 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47153 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46954 * 120.00020 * 24 22 20 27 27 H 1.48500 * 109.46880 * 239.99589 * 24 22 20 28 28 H 1.09004 * 109.47404 * 181.79634 * 1 2 3 29 29 H 1.09000 * 109.47521 * 301.79567 * 1 2 3 30 30 H 1.09001 * 109.47417 * 61.79458 * 1 2 3 31 31 H 1.09002 * 110.66811 * 85.79319 * 4 2 1 32 32 H 1.09001 * 110.66542 * 322.82958 * 4 2 1 33 33 H 1.08996 * 109.47381 * 310.00547 * 6 5 4 34 34 H 1.09003 * 109.46570 * 70.00038 * 6 5 4 35 35 H 1.08004 * 122.53893 * 359.97438 * 8 7 6 36 36 H 1.07999 * 125.20236 * 180.20595 * 9 8 7 37 37 H 1.08001 * 125.20317 * 359.97438 * 11 7 6 38 38 H 1.09004 * 109.92027 * 94.01264 * 12 5 4 39 39 H 1.08993 * 109.91982 * 215.11956 * 12 5 4 40 40 H 0.96998 * 120.00411 * 93.54462 * 15 13 12 41 41 H 1.09001 * 109.46392 * 299.99210 * 18 16 15 42 42 H 1.08994 * 109.46794 * 59.99399 * 18 16 15 43 43 H 0.96997 * 120.00709 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0782 -0.7945 -1.2119 5 7 3.4315 -1.2127 -0.7648 6 6 3.9165 -2.3545 -1.5517 7 6 5.1689 -2.9047 -0.9194 8 6 6.4336 -2.4578 -1.2609 9 6 7.4342 -3.0459 -0.6034 10 16 6.7854 -4.2450 0.5078 11 6 5.1429 -3.8632 0.0079 12 6 3.2908 -1.5743 0.6624 13 6 2.0815 -0.7932 1.2092 14 1 1.3249 -1.4819 1.5852 15 7 2.5058 0.1233 2.2704 16 6 2.5888 -0.3118 3.5433 17 8 2.3118 -1.4619 3.8103 18 6 3.0248 0.6313 4.6350 19 16 3.0349 -0.2436 6.2195 20 6 3.5663 1.0565 7.2834 21 1 3.7740 2.0356 6.8776 22 6 3.7190 0.8220 8.6429 23 7 3.4664 -0.3713 9.1376 24 14 4.2817 2.2006 9.7710 25 1 4.4970 3.4353 8.9745 26 1 3.2432 2.4512 10.8025 27 1 5.5527 1.8110 10.4327 28 1 -0.3634 -1.0272 0.0322 29 1 -0.3634 0.5415 0.8734 30 1 -0.3634 0.4857 -0.9056 31 1 2.1444 -0.1558 -2.0926 32 1 1.4542 -1.6648 -1.4154 33 1 3.1511 -3.1301 -1.5765 34 1 4.1360 -2.0280 -2.5683 35 1 6.5977 -1.6886 -2.0011 36 1 8.4825 -2.8232 -0.7365 37 1 4.2498 -4.3328 0.3931 38 1 3.1149 -2.6458 0.7585 39 1 4.1932 -1.2961 1.2067 40 1 2.7271 1.0433 2.0569 41 1 4.0269 1.0007 4.4172 42 1 2.3316 1.4707 4.6882 43 1 3.5727 -0.5351 10.0877 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206096739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:47 Heat of formation + Delta-G solvation = -20.658221 kcal Electronic energy + Delta-G solvation = -24444.512089 eV Core-core repulsion = 20934.493575 eV Total energy + Delta-G solvation = -3510.018513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28402 -40.00345 -38.58648 -35.47837 -34.58947 -33.76251 -31.33277 -30.77012 -29.29262 -27.74709 -27.56812 -25.78851 -23.76084 -22.54809 -21.53944 -21.26859 -19.79906 -19.62293 -18.42180 -17.90289 -17.75283 -16.88669 -16.84652 -16.35854 -16.24572 -16.12265 -15.61223 -14.98996 -14.72903 -14.52000 -14.16594 -14.12859 -13.91163 -13.89677 -13.65192 -13.52532 -13.19626 -13.16341 -12.99063 -12.91620 -12.69096 -12.57233 -12.47788 -12.25570 -11.87591 -11.73713 -11.65967 -11.55657 -11.16262 -10.93448 -10.27949 -10.12677 -9.75154 -9.51683 -9.27749 -8.66997 -8.35232 -6.13177 0.07107 0.74231 1.08710 1.26595 1.41032 1.46634 1.58002 1.59889 1.72863 2.24961 2.29011 2.98987 3.07999 3.31460 3.46738 3.62768 3.89977 3.97838 4.02004 4.05288 4.17371 4.29344 4.36917 4.37781 4.49742 4.52679 4.53248 4.60493 4.67778 4.80624 4.81058 4.87173 4.90260 5.06639 5.09605 5.19653 5.33525 5.41651 5.45973 5.53670 5.55248 5.81533 6.00513 6.19597 6.50519 7.06191 7.24121 8.74248 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010889 B = 0.002819 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.733232 B = 9929.290831 C =11809.540968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.102 0.898 4 C 0.042 3.958 5 N -0.510 5.510 6 C 0.106 3.894 7 C -0.103 4.103 8 C -0.125 4.125 9 C -0.214 4.214 10 S 0.071 5.929 11 C -0.222 4.222 12 C 0.039 3.961 13 C 0.137 3.863 14 H 0.073 0.927 15 N -0.702 5.702 16 C 0.535 3.465 17 O -0.564 6.564 18 C -0.129 4.129 19 S -0.150 6.150 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.274 1.274 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.108 0.892 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.415 0.585 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.988 0.414 -28.575 28.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.120 0.880 4 C -0.085 4.085 5 N -0.234 5.234 6 C -0.023 4.023 7 C -0.116 4.116 8 C -0.155 4.155 9 C -0.350 4.350 10 S 0.334 5.666 11 C -0.358 4.358 12 C -0.091 4.091 13 C 0.031 3.969 14 H 0.091 0.909 15 N -0.356 5.356 16 C 0.321 3.679 17 O -0.443 6.443 18 C -0.281 4.281 19 S 0.077 5.923 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.178 0.822 36 H 0.201 0.799 37 H 0.175 0.825 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.566 -2.215 -27.050 27.185 hybrid contribution -0.334 2.060 0.117 2.090 sum 1.232 -0.155 -26.932 26.961 Atomic orbital electron populations 1.21761 0.92934 1.02211 1.02951 1.22372 0.96606 1.00144 0.91668 0.87982 1.23411 0.87694 0.99292 0.98135 1.64940 1.24402 1.32943 1.01143 1.21021 0.92145 0.91443 0.97727 1.19025 0.96614 0.97272 0.98699 1.20265 0.90679 1.02027 1.02544 1.25906 1.04508 1.02499 1.02045 1.84520 0.99555 1.39909 1.42579 1.25673 1.00404 1.05390 1.04359 1.23118 0.97797 0.97825 0.90345 1.22004 0.95332 0.92043 0.87537 0.90930 1.45812 1.69022 1.15419 1.05336 1.20075 0.76279 0.87659 0.83891 1.90683 1.49899 1.20544 1.83132 1.23371 1.05684 1.02066 0.96939 1.85559 1.88953 1.19633 0.98139 1.23239 1.52523 0.98316 0.95297 0.89968 1.26129 0.94749 0.99233 0.99028 1.70187 1.47069 1.23226 1.14310 0.84905 0.77906 0.77655 0.77473 1.18009 1.19855 1.19945 0.92845 0.92956 0.89840 0.87163 0.92539 0.93248 0.87338 0.82227 0.79854 0.82455 0.94193 0.92472 0.74706 0.87556 0.87167 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.17 71.98 0.66 -1.18 16 2 C -0.09 -1.30 3.38 -9.52 -0.03 -1.33 16 3 H 0.10 1.30 7.74 -2.39 -0.02 1.28 16 4 C 0.04 0.53 6.00 86.65 0.52 1.05 16 5 N -0.51 -8.95 5.39 -887.56 -4.79 -13.73 16 6 C 0.11 1.65 5.29 85.55 0.45 2.10 16 7 C -0.10 -2.00 4.63 -20.92 -0.10 -2.09 16 8 C -0.13 -2.22 9.98 21.22 0.21 -2.01 16 9 C -0.21 -3.90 11.23 66.72 0.75 -3.16 16 10 S 0.07 1.54 23.34 -56.49 -1.32 0.22 16 11 C -0.22 -4.92 9.56 66.72 0.64 -4.28 16 12 C 0.04 0.93 5.16 86.45 0.45 1.37 16 13 C 0.14 3.18 2.88 45.94 0.13 3.31 16 14 H 0.07 2.04 7.33 -2.39 -0.02 2.03 16 15 N -0.70 -18.38 5.03 -438.06 -2.20 -20.58 16 16 C 0.53 20.13 7.84 87.66 0.69 20.82 16 17 O -0.56 -26.49 15.56 -3.03 -0.05 -26.54 16 18 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 19 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 20 C -0.55 -31.52 9.50 67.95 0.65 -30.88 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 22 C 0.01 0.76 5.49 84.86 0.47 1.23 16 23 N -0.91 -56.46 13.22 21.65 0.29 -56.18 16 24 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H 0.05 0.75 8.11 -2.39 -0.02 0.73 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.66 7.75 -2.39 -0.02 0.65 16 33 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 34 H 0.11 1.23 8.13 -2.39 -0.02 1.21 16 35 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 37 H 0.16 3.45 7.36 -2.91 -0.02 3.43 16 38 H 0.04 1.04 6.11 -2.38 -0.01 1.03 16 39 H 0.06 1.71 7.93 -2.39 -0.02 1.69 16 40 H 0.42 8.18 8.35 -92.71 -0.77 7.41 16 41 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -76.82 379.88 -1.05 -77.86 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.24 Total: 22.39 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 5.92 Total: -19.84 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -6.71 Total: -90.49 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -2.48 Total: -9.38 kcal Total: -76.82 -1.05 -77.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206096739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.204 kcal (2) G-P(sol) polarization free energy of solvation -76.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds