Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46973 * 2 1 4 4 C 1.34226 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00045 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47217 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47038 * 55.00307 * 7 6 4 9 9 C 1.50700 * 109.46890 * 175.00168 * 7 6 4 10 10 H 1.07994 * 119.99957 * 239.99726 * 9 7 6 11 11 C 1.37883 * 119.99955 * 60.00087 * 9 7 6 12 12 N 1.31513 * 120.00159 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 119.99763 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47367 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47104 * 120.00011 * 13 11 9 16 16 H 1.48501 * 109.47464 * 240.00023 * 13 11 9 17 17 O 1.42896 * 109.46726 * 295.00156 * 7 6 4 18 18 C 1.35644 * 116.99584 * 155.91729 * 17 7 6 19 19 C 1.38578 * 120.14258 * 5.48898 * 18 17 7 20 20 C 1.38342 * 120.06912 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.82715 * 180.02562 * 20 19 18 22 22 C 1.38867 * 120.34542 * 0.02562 * 20 19 18 23 23 C 1.37641 * 120.28433 * 359.97142 * 22 20 19 24 24 C 1.39844 * 119.92883 * 0.28221 * 23 22 20 25 25 C 1.47266 * 120.17700 * 179.72745 * 24 23 22 26 26 O 1.21525 * 120.00250 * 180.02562 * 25 24 23 27 27 O 1.34771 * 119.99946 * 359.97438 * 25 24 23 28 28 C 1.45199 * 117.00502 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.46653 * 60.00517 * 1 2 3 30 30 H 1.08998 * 109.46718 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47722 * 300.00394 * 1 2 3 32 32 H 1.08995 * 109.47722 * 239.99606 * 2 1 3 33 33 H 1.09003 * 109.46653 * 119.99483 * 2 1 3 34 34 H 1.08996 * 109.46728 * 60.00403 * 6 4 3 35 35 H 1.08999 * 109.47086 * 300.00870 * 6 4 3 36 36 H 0.96990 * 120.00226 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.96346 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.85937 * 180.02562 * 22 20 19 39 39 H 1.07997 * 120.03891 * 180.02562 * 23 22 20 40 40 H 1.08999 * 109.47436 * 179.97438 * 28 27 25 41 41 H 1.09003 * 109.47081 * 300.00194 * 28 27 25 42 42 H 1.09003 * 109.46557 * 59.99622 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 1 5.7806 2.2495 -0.8414 9 6 6.0242 4.2447 -0.1242 10 1 6.6590 4.4927 -0.9619 11 6 5.7404 5.1971 0.8316 12 7 4.9670 4.8951 1.8515 13 14 6.4546 6.9162 0.6778 14 1 7.2851 6.9993 -0.5505 15 1 5.3501 7.9055 0.5958 16 1 7.2958 7.2110 1.8655 17 8 5.8943 2.2644 1.2214 18 6 7.1100 1.6631 1.2062 19 6 7.9102 1.7398 0.0773 20 6 9.1501 1.1264 0.0636 21 9 9.9264 1.2047 -1.0393 22 6 9.6009 0.4306 1.1776 23 6 8.8181 0.3453 2.3065 24 6 7.5605 0.9565 2.3312 25 6 6.7158 0.8636 3.5339 26 8 5.6233 1.3955 3.5518 27 8 7.1540 0.1878 4.6145 28 6 6.2685 0.1370 5.7641 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.5843 3.4701 0.8895 35 1 3.5850 3.4692 -0.8904 36 1 4.7671 5.5651 2.5237 37 1 7.5654 2.2791 -0.7926 38 1 10.5704 -0.0450 1.1585 39 1 9.1728 -0.1965 3.1707 40 1 6.7410 -0.4361 6.5618 41 1 6.0682 1.1500 6.1135 42 1 5.3311 -0.3411 5.4798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225708290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -228.350281 kcal Electronic energy + Delta-G solvation = -30808.414092 eV Core-core repulsion = 26248.130577 eV Total energy + Delta-G solvation = -4560.283515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.58721 -40.08554 -39.73043 -38.72330 -36.75382 -35.83205 -35.65014 -33.28538 -31.58991 -30.78501 -30.45930 -29.17800 -27.26466 -26.38218 -23.47123 -23.36341 -22.66654 -21.37077 -20.53940 -19.78581 -18.16020 -17.33540 -17.17944 -16.63418 -16.27492 -16.14674 -15.83559 -15.65841 -15.51891 -15.22559 -15.08126 -14.64790 -14.18997 -13.81813 -13.72230 -13.53059 -13.24749 -12.90880 -12.81609 -12.56996 -12.46038 -12.19531 -11.82764 -11.72150 -11.70385 -11.35861 -11.27694 -11.10387 -11.07486 -11.00539 -10.72825 -10.47034 -10.30775 -10.12434 -9.81472 -9.72469 -9.48249 -9.28318 -8.80254 -8.45214 -7.48876 -6.26806 -4.50631 1.17032 1.92348 3.02815 3.13472 3.15366 3.19472 3.25834 3.28735 3.33300 4.18425 4.23428 4.25697 4.60754 5.06517 5.10099 5.15804 5.16597 5.35735 5.38935 5.39821 5.42472 5.46501 5.48943 5.66709 5.73981 5.90697 5.91950 5.97790 6.08121 6.24126 6.29730 6.34302 6.45216 6.54820 6.65503 6.74717 6.93256 7.00097 7.21279 7.27125 7.60669 7.77923 8.36221 8.47890 8.52463 8.71144 9.27506 10.73017 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.006836 B = 0.005582 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4095.278198 B = 5014.689786 C = 6367.235864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.366 6.366 4 C 0.459 3.541 5 O -0.516 6.516 6 C -0.099 4.099 7 C 0.214 3.786 8 H 0.036 0.964 9 C -0.569 4.569 10 H 0.071 0.929 11 C 0.086 3.914 12 N -0.844 5.844 13 Si 0.895 3.105 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.281 1.281 17 O -0.242 6.242 18 C 0.272 3.728 19 C -0.253 4.253 20 C 0.166 3.834 21 F -0.140 7.140 22 C -0.237 4.237 23 C -0.002 4.002 24 C -0.203 4.203 25 C 0.503 3.497 26 O -0.468 6.468 27 O -0.369 6.369 28 C 0.041 3.959 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.269 0.731 37 H 0.154 0.846 38 H 0.132 0.868 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.278 -8.634 1.396 8.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.303 3.697 5 O -0.404 6.404 6 C -0.136 4.136 7 C 0.160 3.840 8 H 0.054 0.946 9 C -0.605 4.605 10 H 0.090 0.910 11 C -0.123 4.123 12 N -0.477 5.477 13 Si 0.722 3.278 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.206 1.206 17 O -0.149 6.149 18 C 0.218 3.782 19 C -0.272 4.272 20 C 0.146 3.854 21 F -0.119 7.119 22 C -0.256 4.256 23 C -0.020 4.020 24 C -0.205 4.205 25 C 0.347 3.653 26 O -0.353 6.353 27 O -0.288 6.288 28 C -0.053 4.053 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.172 0.828 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.711 -8.668 1.706 8.863 hybrid contribution 0.451 0.890 -0.211 1.020 sum -0.260 -7.778 1.495 7.925 Atomic orbital electron populations 1.21775 0.93300 1.02306 1.03321 1.22849 0.94839 0.81774 1.02011 1.86564 1.26085 1.30990 1.84730 1.24818 0.79549 0.94221 0.71097 1.90584 1.60229 1.43647 1.45898 1.21783 0.96084 0.88371 1.07398 1.20038 0.89357 0.92927 0.81666 0.94590 1.21392 1.33592 0.94643 1.10883 0.91043 1.25080 0.93778 0.99084 0.94367 1.69903 1.33262 1.34277 1.10298 0.86478 0.79227 0.83541 0.78545 1.19360 1.20508 1.20627 1.86506 1.26769 1.62841 1.38763 1.18700 0.85993 0.83836 0.89714 1.21287 0.95230 1.08880 1.01847 1.17732 0.88749 0.96118 0.82778 1.91468 1.74189 1.94402 1.51832 1.20671 1.02869 1.08337 0.93719 1.20907 0.90702 0.93432 0.96947 1.18390 0.97473 1.11629 0.93015 1.20832 0.85666 0.76261 0.82580 1.90970 1.20685 1.41970 1.81652 1.86502 1.48465 1.69805 1.24021 1.23103 0.94013 1.02491 0.85733 0.91723 0.90853 0.91583 0.91907 0.91755 0.83985 0.87775 0.92121 0.82804 0.84967 0.84086 0.88780 0.92144 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.29 37.16 0.38 -1.30 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -6.93 10.22 -39.25 -0.40 -7.33 16 4 C 0.46 9.94 7.84 36.01 0.28 10.22 16 5 O -0.52 -12.17 15.17 -24.05 -0.36 -12.54 16 6 C -0.10 -2.22 5.22 -27.88 -0.15 -2.36 16 7 C 0.21 5.14 1.35 -27.88 -0.04 5.10 16 8 H 0.04 0.84 6.18 -51.93 -0.32 0.52 16 9 C -0.57 -14.20 7.91 -34.44 -0.27 -14.48 16 10 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 11 C 0.09 2.19 5.24 -17.82 -0.09 2.09 16 12 N -0.84 -22.41 10.93 55.43 0.61 -21.81 16 13 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 O -0.24 -6.15 6.50 -47.20 -0.31 -6.45 16 18 C 0.27 6.23 6.60 -38.69 -0.26 5.97 16 19 C -0.25 -5.26 8.65 -39.42 -0.34 -5.60 16 20 C 0.17 3.00 7.30 -39.31 -0.29 2.72 16 21 F -0.14 -2.43 17.26 2.25 0.04 -2.39 16 22 C -0.24 -3.74 10.00 -39.57 -0.40 -4.14 16 23 C 0.00 -0.02 9.61 -39.20 -0.38 -0.40 16 24 C -0.20 -4.19 5.89 -104.86 -0.62 -4.80 16 25 C 0.50 10.64 7.88 34.40 0.27 10.91 16 26 O -0.47 -11.59 14.95 -26.62 -0.40 -11.99 16 27 O -0.37 -6.32 9.81 -40.68 -0.40 -6.72 16 28 C 0.04 0.55 10.57 101.05 1.07 1.62 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 34 H 0.14 3.51 6.22 -51.93 -0.32 3.19 16 35 H 0.10 2.09 8.14 -51.93 -0.42 1.66 16 36 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.15 3.25 5.66 -52.48 -0.30 2.95 16 38 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.14 1.88 7.61 -52.49 -0.40 1.48 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -30.88 369.34 -6.38 -37.26 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.11 Total: 4.88 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.59 Total: 6.68 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.61 Total: -21.81 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.87 Total: -45.04 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.88 -6.38 -37.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225708290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.090 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds