Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46973 * 2 1 4 4 C 1.34226 * 117.00001 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00045 * 0.02562 * 4 3 2 6 6 C 1.50703 * 120.00123 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47217 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47038 * 55.00307 * 7 6 4 9 9 C 1.50700 * 109.46890 * 175.00168 * 7 6 4 10 10 H 1.07994 * 119.99957 * 239.99726 * 9 7 6 11 11 C 1.37883 * 119.99955 * 60.00087 * 9 7 6 12 12 N 1.31513 * 120.00159 * 359.97438 * 11 9 7 13 13 Si 1.86793 * 119.99763 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47367 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47104 * 120.00011 * 13 11 9 16 16 H 1.48501 * 109.47464 * 240.00023 * 13 11 9 17 17 O 1.42896 * 109.46726 * 295.00156 * 7 6 4 18 18 C 1.35644 * 116.99584 * 155.91729 * 17 7 6 19 19 C 1.38578 * 120.14258 * 5.48898 * 18 17 7 20 20 C 1.38342 * 120.06912 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.82715 * 180.02562 * 20 19 18 22 22 C 1.38867 * 120.34542 * 0.02562 * 20 19 18 23 23 C 1.37641 * 120.28433 * 359.97142 * 22 20 19 24 24 C 1.39844 * 119.92883 * 0.28221 * 23 22 20 25 25 C 1.47266 * 120.17700 * 179.72745 * 24 23 22 26 26 O 1.21525 * 120.00250 * 180.02562 * 25 24 23 27 27 O 1.34771 * 119.99946 * 359.97438 * 25 24 23 28 28 C 1.45199 * 117.00502 * 180.02562 * 27 25 24 29 29 H 1.09003 * 109.46653 * 60.00517 * 1 2 3 30 30 H 1.08998 * 109.46718 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47722 * 300.00394 * 1 2 3 32 32 H 1.08995 * 109.47722 * 239.99606 * 2 1 3 33 33 H 1.09003 * 109.46653 * 119.99483 * 2 1 3 34 34 H 1.08996 * 109.46728 * 60.00403 * 6 4 3 35 35 H 1.08999 * 109.47086 * 300.00870 * 6 4 3 36 36 H 0.96990 * 120.00226 * 180.02562 * 12 11 9 37 37 H 1.08007 * 119.96346 * 359.97438 * 19 18 17 38 38 H 1.08003 * 119.85937 * 180.02562 * 22 20 19 39 39 H 1.07997 * 120.03891 * 180.02562 * 23 22 20 40 40 H 1.08999 * 109.47436 * 179.97438 * 28 27 25 41 41 H 1.09003 * 109.47081 * 300.00194 * 28 27 25 42 42 H 1.09003 * 109.46557 * 59.99622 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 6 5.4486 2.8575 0.0001 8 1 5.7806 2.2495 -0.8414 9 6 6.0242 4.2447 -0.1242 10 1 6.6590 4.4927 -0.9619 11 6 5.7404 5.1971 0.8316 12 7 4.9670 4.8951 1.8515 13 14 6.4546 6.9162 0.6778 14 1 7.2851 6.9993 -0.5505 15 1 5.3501 7.9055 0.5958 16 1 7.2958 7.2110 1.8655 17 8 5.8943 2.2644 1.2214 18 6 7.1100 1.6631 1.2062 19 6 7.9102 1.7398 0.0773 20 6 9.1501 1.1264 0.0636 21 9 9.9264 1.2047 -1.0393 22 6 9.6009 0.4306 1.1776 23 6 8.8181 0.3453 2.3065 24 6 7.5605 0.9565 2.3312 25 6 6.7158 0.8636 3.5339 26 8 5.6233 1.3955 3.5518 27 8 7.1540 0.1878 4.6145 28 6 6.2685 0.1370 5.7641 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.5843 3.4701 0.8895 35 1 3.5850 3.4692 -0.8904 36 1 4.7671 5.5651 2.5237 37 1 7.5654 2.2791 -0.7926 38 1 10.5704 -0.0450 1.1585 39 1 9.1728 -0.1965 3.1707 40 1 6.7410 -0.4361 6.5618 41 1 6.0682 1.1500 6.1135 42 1 5.3311 -0.3411 5.4798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225708290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -244.289432 kcal Electronic energy + Delta-G solvation = -30809.105266 eV Core-core repulsion = 26248.130577 eV Total energy + Delta-G solvation = -4560.974689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01161 -41.68713 -41.34698 -40.29962 -38.32402 -37.44882 -37.21558 -35.14372 -32.95506 -32.31818 -32.02255 -30.71427 -28.51619 -28.18941 -25.07736 -24.82627 -24.00867 -22.92943 -22.05669 -21.45234 -19.79538 -18.94965 -18.76739 -18.25806 -17.84514 -17.67860 -17.35995 -17.28159 -17.08531 -16.66182 -16.60592 -16.39022 -15.64663 -15.42137 -15.20158 -15.04840 -14.62106 -14.40544 -14.16887 -13.92019 -13.88661 -13.67998 -13.31736 -13.28299 -12.98396 -12.90816 -12.86800 -12.73600 -12.62378 -12.49023 -12.30488 -12.17204 -11.70210 -11.58500 -11.51115 -11.45021 -11.24078 -11.04808 -10.72949 -9.94979 -9.08566 -8.18493 -6.48195 -0.34251 0.45983 1.29493 1.38573 1.42968 1.53058 1.56720 1.79676 1.81597 2.35788 2.58054 2.72369 3.11148 3.21923 3.75725 3.91699 3.97339 3.98877 4.06573 4.10352 4.14140 4.31234 4.34884 4.38385 4.39797 4.49690 4.53040 4.69691 4.84347 4.89639 4.91038 4.92021 5.07979 5.11021 5.13616 5.20102 5.33624 5.44484 5.50272 5.65427 5.79487 5.89133 6.49576 6.83419 6.89286 6.94994 7.32972 8.80455 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.006836 B = 0.005582 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4095.278198 B = 5014.689786 C = 6367.235864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.464 3.536 5 O -0.539 6.539 6 C -0.096 4.096 7 C 0.214 3.786 8 H 0.030 0.970 9 C -0.575 4.575 10 H 0.069 0.931 11 C 0.046 3.954 12 N -0.872 5.872 13 Si 0.954 3.046 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.287 1.287 17 O -0.268 6.268 18 C 0.232 3.768 19 C -0.272 4.272 20 C 0.169 3.831 21 F -0.134 7.134 22 C -0.213 4.213 23 C 0.017 3.983 24 C -0.225 4.225 25 C 0.503 3.497 26 O -0.517 6.517 27 O -0.357 6.357 28 C 0.033 3.967 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.266 0.734 37 H 0.139 0.861 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.144 0.856 41 H 0.051 0.949 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 -10.074 1.867 10.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.284 6.284 4 C 0.309 3.691 5 O -0.429 6.429 6 C -0.133 4.133 7 C 0.160 3.840 8 H 0.048 0.952 9 C -0.612 4.612 10 H 0.087 0.913 11 C -0.160 4.160 12 N -0.507 5.507 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.196 1.196 16 H -0.213 1.213 17 O -0.177 6.177 18 C 0.180 3.820 19 C -0.292 4.292 20 C 0.150 3.850 21 F -0.112 7.112 22 C -0.231 4.231 23 C -0.001 4.001 24 C -0.227 4.227 25 C 0.349 3.651 26 O -0.407 6.407 27 O -0.275 6.275 28 C -0.060 4.060 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.076 0.924 37 H 0.156 0.844 38 H 0.197 0.803 39 H 0.200 0.800 40 H 0.162 0.838 41 H 0.070 0.930 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.808 -10.127 2.173 10.389 hybrid contribution 0.049 1.157 -0.317 1.201 sum 0.858 -8.970 1.857 9.200 Atomic orbital electron populations 1.21805 0.89774 1.04493 1.03701 1.23270 0.97558 0.79705 1.01909 1.86539 1.24297 1.33542 1.84063 1.24549 0.80387 0.93535 0.70615 1.90559 1.61039 1.44198 1.47119 1.21646 0.95652 0.89045 1.07002 1.19976 0.90029 0.92373 0.81600 0.95178 1.21564 1.33454 0.95405 1.10757 0.91294 1.25723 0.94075 1.02168 0.94043 1.70051 1.34581 1.35067 1.10983 0.85578 0.78607 0.79814 0.78119 1.18819 1.19621 1.21318 1.86451 1.28356 1.64127 1.38764 1.19159 0.85914 0.85478 0.91472 1.21201 0.96676 1.10281 1.01058 1.17853 0.87792 0.95699 0.83701 1.91485 1.73691 1.94296 1.51760 1.21153 1.04093 1.06065 0.91816 1.21350 0.88563 0.91787 0.98408 1.18734 0.99244 1.12398 0.92373 1.21072 0.84977 0.75551 0.83505 1.90946 1.22798 1.44258 1.82663 1.86477 1.48703 1.68446 1.23850 1.23484 0.94261 1.02883 0.85367 0.90840 0.87698 0.91689 0.91250 0.92722 0.86301 0.86085 0.92436 0.84372 0.80268 0.80040 0.83820 0.93018 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 10.29 71.98 0.74 -2.20 16 2 C 0.05 1.49 6.19 71.98 0.45 1.94 16 3 O -0.37 -14.26 10.22 -51.38 -0.53 -14.78 16 4 C 0.46 21.02 7.84 71.24 0.56 21.58 16 5 O -0.54 -26.62 15.17 27.04 0.41 -26.21 16 6 C -0.10 -4.54 5.22 29.85 0.16 -4.38 16 7 C 0.21 10.87 1.35 29.85 0.04 10.91 16 8 H 0.03 1.51 6.18 -2.39 -0.01 1.50 16 9 C -0.58 -29.91 7.91 25.60 0.20 -29.71 16 10 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 11 C 0.05 2.40 5.24 84.66 0.44 2.84 16 12 N -0.87 -48.36 10.93 21.45 0.23 -48.12 16 13 Si 0.95 41.63 29.54 68.60 2.03 43.65 16 14 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 17 O -0.27 -14.39 6.50 -62.27 -0.40 -14.79 16 18 C 0.23 11.00 6.60 22.85 0.15 11.15 16 19 C -0.27 -11.61 8.65 22.38 0.19 -11.41 16 20 C 0.17 5.86 7.30 22.45 0.16 6.03 16 21 F -0.13 -4.37 17.26 44.97 0.78 -3.60 16 22 C -0.21 -5.90 10.00 22.28 0.22 -5.68 16 23 C 0.02 0.50 9.61 22.52 0.22 0.72 16 24 C -0.23 -9.27 5.89 -20.02 -0.12 -9.39 16 25 C 0.50 21.51 7.88 70.20 0.55 22.06 16 26 O -0.52 -26.83 14.95 26.76 0.40 -26.43 16 27 O -0.36 -11.69 9.81 -56.82 -0.56 -12.24 16 28 C 0.03 0.85 10.57 113.37 1.20 2.05 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 33 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 34 H 0.12 6.26 6.22 -2.39 -0.01 6.25 16 35 H 0.12 5.09 8.14 -2.39 -0.02 5.07 16 36 H 0.27 14.15 8.31 -92.72 -0.77 13.38 16 37 H 0.14 6.17 5.66 -2.91 -0.02 6.15 16 38 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 39 H 0.18 3.91 7.61 -2.91 -0.02 3.89 16 40 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -71.67 369.34 8.59 -63.08 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 1.06 Total: 22.94 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.17 Total: 16.51 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.23 Total: -48.12 kcal Atomic # 8 Polarization: -93.79 SS G_CDS: -0.68 Total: -94.47 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.60 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.67 8.59 -63.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225708290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.211 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds