Wall clock time and date at job start Sat Apr 11 2020 05:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45195 * 109.47251 * 2 1 4 4 C 1.34228 * 117.00043 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00254 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00042 * 179.97438 * 4 3 2 7 7 C 1.52994 * 109.47242 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47474 * 54.46460 * 7 6 4 9 9 C 1.50704 * 109.47215 * 174.46505 * 7 6 4 10 10 H 1.07999 * 119.99968 * 245.27276 * 9 7 6 11 11 C 1.37874 * 119.99995 * 65.27426 * 9 7 6 12 12 N 1.31515 * 119.99884 * 359.54218 * 11 9 7 13 13 Si 1.86796 * 120.00070 * 179.54132 * 11 9 7 14 14 H 1.48503 * 109.47244 * 94.98444 * 13 11 9 15 15 H 1.48504 * 109.47153 * 214.98620 * 13 11 9 16 16 H 1.48500 * 109.47015 * 334.98623 * 13 11 9 17 17 O 1.42898 * 109.47502 * 294.46762 * 7 6 4 18 18 C 1.35637 * 117.00827 * 155.71367 * 17 7 6 19 19 C 1.38631 * 120.13536 * 2.44990 * 18 17 7 20 20 C 1.38144 * 120.16112 * 179.69920 * 19 18 17 21 21 C 1.38418 * 120.44640 * 0.59995 * 20 19 18 22 22 C 1.38127 * 120.28114 * 359.67470 * 21 20 19 23 23 F 1.35093 * 120.08633 * 179.97438 * 22 21 20 24 24 C 1.40028 * 119.82683 * 0.02562 * 22 21 20 25 25 C 1.47240 * 120.22114 * 180.02562 * 24 22 21 26 26 O 1.21523 * 120.00531 * 269.97985 * 25 24 22 27 27 O 1.34775 * 119.99652 * 89.97508 * 25 24 22 28 28 C 1.45202 * 117.00002 * 180.02562 * 27 25 24 29 29 H 1.09006 * 109.46579 * 60.00708 * 1 2 3 30 30 H 1.09004 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47860 * 300.00515 * 1 2 3 32 32 H 1.08994 * 109.47184 * 239.99208 * 2 1 3 33 33 H 1.09003 * 109.46714 * 119.99787 * 2 1 3 34 34 H 1.09000 * 109.47136 * 59.99827 * 6 4 3 35 35 H 1.09004 * 109.46924 * 299.99618 * 6 4 3 36 36 H 0.96998 * 119.99864 * 180.02562 * 12 11 9 37 37 H 1.08000 * 119.91954 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.77408 * 180.27838 * 20 19 18 39 39 H 1.07999 * 119.86480 * 179.69798 * 21 20 19 40 40 H 1.08999 * 109.47205 * 300.00728 * 28 27 25 41 41 H 1.09006 * 109.47085 * 60.00220 * 28 27 25 42 42 H 1.08990 * 109.47261 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 0.0014 8 1 5.7810 2.2411 -0.8341 9 6 6.0244 4.2431 -0.1362 10 1 6.5887 4.5083 -1.0180 11 6 5.8308 5.1725 0.8637 12 7 5.1359 4.8523 1.9334 13 14 6.5553 6.8863 0.6990 14 1 5.5331 7.8038 0.1348 15 1 6.9763 7.3764 2.0361 16 1 7.7327 6.8411 -0.2049 17 8 5.8940 2.2760 1.2285 18 6 7.1079 1.6709 1.2185 19 6 7.8802 1.6791 0.0673 20 6 9.1192 1.0683 0.0583 21 6 9.5961 0.4326 1.1917 22 6 8.8395 0.4083 2.3470 23 9 9.3085 -0.2136 3.4508 24 6 7.5846 1.0292 2.3709 25 6 6.7710 1.0091 3.5980 26 8 5.9847 0.1029 3.7910 27 8 6.8985 1.9958 4.5072 28 6 6.0652 1.9109 5.6933 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.5843 3.4700 0.8895 35 1 3.5852 3.4689 -0.8906 36 1 4.9994 5.5063 2.6367 37 1 7.5143 2.1681 -0.8234 38 1 9.7176 1.0823 -0.8406 39 1 10.5640 -0.0461 1.1727 40 1 5.0152 1.9160 5.4008 41 1 6.2886 0.9883 6.2291 42 1 6.2660 2.7648 6.3402 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225938179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:00 Heat of formation + Delta-G solvation = -228.038127 kcal Electronic energy + Delta-G solvation = -30984.919720 eV Core-core repulsion = 26424.649741 eV Total energy + Delta-G solvation = -4560.269979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.66481 -40.08742 -39.77509 -38.84005 -36.78421 -35.86868 -35.76231 -33.32992 -31.63798 -31.11384 -30.31635 -29.05731 -27.25765 -26.42946 -23.64862 -23.48239 -22.63585 -21.33092 -20.65833 -19.83126 -18.22861 -17.45464 -17.09170 -16.59897 -16.51483 -16.19318 -16.15404 -15.71995 -15.34962 -15.24484 -15.14310 -14.70693 -14.52065 -13.90915 -13.84288 -13.59580 -13.19200 -12.93514 -12.65312 -12.60316 -12.32768 -12.14710 -11.89712 -11.77212 -11.64017 -11.40992 -11.29506 -11.17478 -11.13105 -11.08172 -10.88838 -10.52149 -10.27147 -10.15996 -10.04067 -9.79925 -9.54653 -9.35905 -8.84463 -8.45789 -7.49185 -6.33180 -4.55125 1.39920 1.86875 2.67871 2.95314 3.12980 3.23260 3.25071 3.27119 3.28481 3.97981 4.07714 4.18736 4.73670 5.01994 5.08594 5.14302 5.20167 5.29028 5.35422 5.46425 5.47677 5.54301 5.57814 5.66718 5.78779 5.87604 5.88846 5.90038 6.05541 6.16481 6.25274 6.27064 6.37375 6.53534 6.68710 6.80968 6.86398 6.93786 7.13769 7.22122 7.54867 7.71059 8.25066 8.29001 8.45321 8.65310 9.23095 10.68683 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.005681 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.653498 B = 4927.413831 C = 6425.063375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.454 3.546 5 O -0.511 6.511 6 C -0.099 4.099 7 C 0.221 3.779 8 H 0.040 0.960 9 C -0.569 4.569 10 H 0.073 0.927 11 C 0.087 3.913 12 N -0.848 5.848 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.270 1.270 17 O -0.271 6.271 18 C 0.256 3.744 19 C -0.212 4.212 20 C -0.036 4.036 21 C -0.221 4.221 22 C 0.167 3.833 23 F -0.138 7.138 24 C -0.211 4.211 25 C 0.543 3.457 26 O -0.503 6.503 27 O -0.343 6.343 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.108 0.892 36 H 0.269 0.731 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -4.755 -1.296 4.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.298 3.702 5 O -0.398 6.398 6 C -0.136 4.136 7 C 0.167 3.833 8 H 0.057 0.943 9 C -0.605 4.605 10 H 0.091 0.909 11 C -0.122 4.122 12 N -0.482 5.482 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.194 1.194 17 O -0.180 6.180 18 C 0.204 3.796 19 C -0.231 4.231 20 C -0.054 4.054 21 C -0.240 4.240 22 C 0.148 3.852 23 F -0.116 7.116 24 C -0.214 4.214 25 C 0.386 3.614 26 O -0.390 6.390 27 O -0.258 6.258 28 C -0.055 4.055 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.079 0.921 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.859 -5.254 -0.816 5.385 hybrid contribution 0.323 0.693 0.268 0.810 sum -0.536 -4.561 -0.548 4.625 Atomic orbital electron populations 1.21777 0.93250 1.02380 1.03282 1.22873 0.94862 0.81613 1.02187 1.86553 1.25984 1.31175 1.84702 1.24821 0.79687 0.94219 0.71460 1.90622 1.60185 1.43541 1.45465 1.21798 0.96360 0.88440 1.07017 1.19984 0.88961 0.93074 0.81238 0.94256 1.21366 1.37506 0.95311 1.06343 0.90911 1.25057 0.93609 0.98995 0.94536 1.69923 1.36223 1.34900 1.07129 0.86496 0.79686 0.83475 0.77996 1.20296 1.20782 1.19426 1.86237 1.27693 1.64293 1.39748 1.18526 0.86310 0.84536 0.90274 1.21395 0.96233 1.06281 0.99196 1.20847 0.94587 0.92973 0.97000 1.20632 1.01840 1.08977 0.92568 1.17126 0.90588 0.94100 0.83406 1.91470 1.88145 1.80072 1.51919 1.18118 0.97061 1.13370 0.92855 1.20582 0.79809 0.78758 0.82256 1.90795 1.35321 1.35989 1.76887 1.86702 1.60845 1.47824 1.30461 1.23182 0.95144 1.02392 0.84788 0.91717 0.90785 0.91614 0.91809 0.91613 0.84935 0.87447 0.92098 0.83447 0.85036 0.84868 0.91803 0.92545 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.29 37.16 0.38 -1.28 16 2 C 0.06 0.89 6.19 37.16 0.23 1.12 16 3 O -0.37 -6.75 10.22 -39.25 -0.40 -7.15 16 4 C 0.45 9.54 7.84 36.01 0.28 9.82 16 5 O -0.51 -11.93 15.18 -23.91 -0.36 -12.29 16 6 C -0.10 -2.10 5.28 -27.88 -0.15 -2.25 16 7 C 0.22 5.08 1.35 -27.88 -0.04 5.04 16 8 H 0.04 0.87 5.99 -51.93 -0.31 0.56 16 9 C -0.57 -13.54 8.09 -34.44 -0.28 -13.82 16 10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.09 2.13 5.25 -17.82 -0.09 2.04 16 12 N -0.85 -21.67 11.08 55.43 0.61 -21.05 16 13 Si 0.90 19.19 29.54 -169.99 -5.02 14.17 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 17 O -0.27 -6.75 7.61 -32.48 -0.25 -7.00 16 18 C 0.26 5.86 6.60 -38.68 -0.26 5.61 16 19 C -0.21 -4.14 8.73 -39.47 -0.34 -4.48 16 20 C -0.04 -0.57 10.02 -39.55 -0.40 -0.97 16 21 C -0.22 -3.57 10.00 -39.56 -0.40 -3.97 16 22 C 0.17 3.24 7.29 -38.95 -0.28 2.96 16 23 F -0.14 -2.58 16.83 2.25 0.04 -2.54 16 24 C -0.21 -4.74 5.77 -104.81 -0.60 -5.34 16 25 C 0.54 12.70 6.57 34.39 0.23 12.92 16 26 O -0.50 -12.48 16.90 -19.28 -0.33 -12.80 16 27 O -0.34 -7.41 10.58 -40.70 -0.43 -7.84 16 28 C 0.04 0.65 10.57 101.05 1.07 1.72 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 34 H 0.13 3.09 6.62 -51.93 -0.34 2.75 16 35 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 36 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.15 2.79 5.69 -52.49 -0.30 2.49 16 38 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 372.90 15.07 5.62 5.62 Total: -1.00 -30.76 372.90 -6.31 -37.07 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.15 Total: 4.69 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -0.65 Total: 9.12 kcal Atomic # 7 Polarization: -21.67 SS G_CDS: 0.61 Total: -21.05 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -1.77 Total: -47.07 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.76 -6.31 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225938179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.969 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds