Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07997 * 120.00007 * 94.64399 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31511 * 120.00131 * 6.44311 * 11 9 7 13 13 Si 1.86802 * 119.99663 * 186.43573 * 11 9 7 14 14 H 1.48491 * 109.47262 * 270.00217 * 13 11 9 15 15 H 1.48501 * 109.46899 * 30.00544 * 13 11 9 16 16 H 1.48504 * 109.46797 * 150.00087 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35682 * 117.00310 * 149.99544 * 17 7 6 19 19 C 1.38678 * 119.65905 * 179.72518 * 18 17 7 20 20 C 1.38992 * 119.04795 * 179.73367 * 19 18 17 21 21 O 1.35741 * 120.81555 * 180.28081 * 20 19 18 22 22 C 1.42898 * 117.00171 * 0.26237 * 21 20 19 23 23 C 1.39441 * 118.36916 * 0.53387 * 20 19 18 24 24 N 1.48017 * 120.39097 * 179.74964 * 23 20 19 25 25 O 1.21800 * 119.99580 * 179.97438 * 24 23 20 26 26 O 1.21796 * 120.00235 * 359.97438 * 24 23 20 27 27 C 1.37828 * 119.21497 * 359.73282 * 23 20 19 28 28 N 1.32054 * 120.89548 * 359.97438 * 27 23 20 29 29 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 31 31 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 34 34 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 35 35 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 36 36 H 0.96997 * 120.00252 * 355.07231 * 12 11 9 37 37 H 1.08001 * 120.47595 * 0.02562 * 19 18 17 38 38 H 1.09001 * 109.46677 * 299.99513 * 22 21 20 39 39 H 1.08995 * 109.47285 * 59.99941 * 22 21 20 40 40 H 1.09004 * 109.46879 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.55444 * 179.97438 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3054 4.8002 0.7455 11 6 6.1922 4.8005 -1.3861 12 7 5.7350 4.1778 -2.4504 13 14 7.0691 6.4399 -1.5678 14 1 6.0788 7.5431 -1.4820 15 1 8.0709 6.5884 -0.4817 16 1 7.7547 6.4913 -2.8841 17 8 5.8952 2.2742 1.2256 18 6 7.0521 1.5665 1.1856 19 6 7.5393 0.9817 2.3449 20 6 8.7227 0.2549 2.2883 21 8 9.2290 -0.3372 3.3999 22 6 8.4890 -0.1810 4.6123 23 6 9.3798 0.1533 1.0626 24 7 10.6461 -0.6052 0.9525 25 8 11.2138 -0.6897 -0.1218 26 8 11.1203 -1.1448 1.9360 27 6 8.8361 0.7672 -0.0451 28 7 7.7065 1.4457 0.0417 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5852 3.4690 0.8905 35 1 3.5844 3.4701 -0.8894 36 1 5.3437 3.2944 -2.3648 37 1 7.0044 1.0857 3.2774 38 1 8.4094 0.8786 4.8553 39 1 7.4911 -0.6007 4.4856 40 1 9.0025 -0.7012 5.4209 41 1 9.3407 0.6924 -0.9971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226581283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = -133.389387 kcal Electronic energy + Delta-G solvation = -30133.468204 eV Core-core repulsion = 25597.222464 eV Total energy + Delta-G solvation = -4536.245740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93058 -40.70254 -40.12896 -39.06357 -37.48068 -36.24270 -36.10769 -33.92390 -31.96529 -31.83563 -31.35323 -30.16287 -27.92320 -26.22728 -25.86740 -23.75009 -23.27094 -22.68662 -21.86954 -20.32518 -19.35272 -18.72556 -18.59056 -17.76250 -17.28115 -17.16414 -16.79687 -16.58005 -16.22443 -16.05530 -15.75279 -15.01138 -14.79658 -14.56727 -14.23190 -13.94368 -13.54068 -13.37553 -13.16673 -12.86611 -12.62804 -12.38905 -12.03395 -12.00893 -11.79547 -11.54654 -11.46757 -11.22894 -11.21336 -11.03849 -10.93815 -10.78658 -10.50638 -10.40110 -10.27667 -10.08093 -9.51857 -9.30554 -9.26783 -8.72138 -8.44343 -6.74807 -4.55287 0.23632 1.06290 1.68695 1.71526 2.62466 2.67870 2.96417 3.25497 3.32918 3.42576 3.47905 3.64303 4.24085 4.27954 4.39620 4.70020 4.76280 4.89089 4.90765 4.92298 4.99562 5.10595 5.16666 5.22242 5.24197 5.39565 5.46856 5.64397 5.70642 5.84907 5.86799 5.92691 5.93146 6.41665 6.55433 6.66678 6.78825 6.84090 7.47452 7.55662 7.84022 8.04035 8.13372 8.16136 8.41707 9.19692 10.61913 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007904 B = 0.004400 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.572151 B = 6361.966059 C = 8676.180952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.456 3.544 5 O -0.512 6.512 6 C -0.105 4.105 7 C 0.206 3.794 8 H 0.074 0.926 9 C -0.618 4.618 10 H 0.063 0.937 11 C 0.038 3.962 12 N -0.886 5.886 13 Si 1.074 2.926 14 H -0.284 1.284 15 H -0.287 1.287 16 H -0.279 1.279 17 O -0.287 6.287 18 C 0.441 3.559 19 C -0.308 4.308 20 C 0.256 3.744 21 O -0.277 6.277 22 C 0.018 3.982 23 C -0.192 4.192 24 N 0.057 4.943 25 O -0.188 6.188 26 O -0.160 6.160 27 C 0.256 3.744 28 N -0.519 5.519 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.272 0.728 37 H 0.159 0.841 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.019 -6.441 9.339 12.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.282 6.282 4 C 0.300 3.700 5 O -0.399 6.399 6 C -0.143 4.143 7 C 0.152 3.848 8 H 0.091 0.909 9 C -0.655 4.655 10 H 0.081 0.919 11 C -0.170 4.170 12 N -0.520 5.520 13 Si 0.901 3.099 14 H -0.210 1.210 15 H -0.212 1.212 16 H -0.205 1.205 17 O -0.191 6.191 18 C 0.263 3.737 19 C -0.330 4.330 20 C 0.201 3.799 21 O -0.185 6.185 22 C -0.077 4.077 23 C -0.282 4.282 24 N 0.571 4.429 25 O -0.396 6.396 26 O -0.376 6.376 27 C 0.093 3.907 28 N -0.245 5.245 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.083 0.917 37 H 0.177 0.823 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.431 -4.886 7.836 10.243 hybrid contribution -0.151 -1.761 1.827 2.542 sum -4.581 -6.647 9.663 12.591 Atomic orbital electron populations 1.21786 0.92982 1.02571 1.03436 1.22919 0.95098 0.81295 1.02209 1.86569 1.25650 1.31509 1.84459 1.24701 0.79844 0.93969 0.71466 1.90612 1.60314 1.43465 1.45527 1.22172 0.97109 0.88930 1.06112 1.20322 0.87704 0.95128 0.81611 0.90869 1.22084 1.47443 0.99899 0.96107 0.91879 1.25913 0.94594 1.05037 0.91441 1.70813 1.35193 1.14360 1.31647 0.83458 0.76382 0.73815 0.76257 1.21000 1.21248 1.20473 1.86153 1.32365 1.59997 1.40538 1.19725 0.84666 0.81762 0.87562 1.20985 0.99929 1.11036 1.01082 1.18463 0.89083 0.86748 0.85594 1.86354 1.48513 1.68033 1.15647 1.23332 0.97365 1.02990 0.83990 1.21483 0.93845 1.16650 0.96214 1.43022 1.01081 0.98651 1.00194 1.94509 1.61843 1.66919 1.16373 1.94532 1.67974 1.46550 1.28546 1.22500 0.88137 0.83368 0.96726 1.68045 1.08901 1.21002 1.26569 0.91623 0.91483 0.90612 0.91561 0.91731 0.87954 0.86057 0.91685 0.82322 0.91642 0.91757 0.87093 0.79554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.06 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.36 -6.05 10.22 -39.23 -0.40 -6.45 16 4 C 0.46 8.80 7.84 36.01 0.28 9.08 16 5 O -0.51 -10.99 15.18 -23.93 -0.36 -11.36 16 6 C -0.11 -2.11 5.38 -27.88 -0.15 -2.26 16 7 C 0.21 4.74 1.04 -27.88 -0.03 4.71 16 8 H 0.07 1.87 5.59 -51.93 -0.29 1.58 16 9 C -0.62 -15.43 8.64 -34.44 -0.30 -15.73 16 10 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 11 C 0.04 0.97 5.45 -17.82 -0.10 0.87 16 12 N -0.89 -23.80 13.63 55.43 0.76 -23.04 16 13 Si 1.07 23.05 29.91 -169.99 -5.08 17.97 16 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 15 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 17 O -0.29 -6.21 9.01 -32.67 -0.29 -6.50 16 18 C 0.44 8.89 7.44 -17.17 -0.13 8.76 16 19 C -0.31 -5.06 9.04 -39.14 -0.35 -5.42 16 20 C 0.26 4.17 6.71 -38.85 -0.26 3.91 16 21 O -0.28 -3.95 8.66 -40.48 -0.35 -4.30 16 22 C 0.02 0.16 9.84 101.05 0.99 1.16 16 23 C -0.19 -3.36 6.89 -79.65 -0.55 -3.91 16 24 N 0.06 1.03 4.45 34.11 0.15 1.18 16 25 O -0.19 -3.41 18.47 -29.46 -0.54 -3.95 16 26 O -0.16 -2.92 17.37 -36.33 -0.63 -3.56 16 27 C 0.26 4.60 10.70 -17.61 -0.19 4.41 16 28 N -0.52 -10.81 8.64 -13.40 -0.12 -10.92 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.12 2.48 7.84 -51.93 -0.41 2.08 16 36 H 0.27 7.29 6.39 -40.82 -0.26 7.03 16 37 H 0.16 2.13 6.46 -52.49 -0.34 1.80 16 38 H 0.06 0.54 7.70 -51.93 -0.40 0.14 16 39 H 0.06 0.53 7.72 -51.93 -0.40 0.13 16 40 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.19 2.91 7.61 -52.49 -0.40 2.51 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -30.73 366.41 -6.18 -36.91 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.66 Total: 2.96 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -0.16 Total: 5.53 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.79 Total: -32.78 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -2.58 Total: -36.11 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.08 Total: 17.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.73 -6.18 -36.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226581283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.479 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds