Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07997 * 120.00007 * 94.64399 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31511 * 120.00131 * 6.44311 * 11 9 7 13 13 Si 1.86802 * 119.99663 * 186.43573 * 11 9 7 14 14 H 1.48491 * 109.47262 * 270.00217 * 13 11 9 15 15 H 1.48501 * 109.46899 * 30.00544 * 13 11 9 16 16 H 1.48504 * 109.46797 * 150.00087 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35682 * 117.00310 * 149.99544 * 17 7 6 19 19 C 1.38678 * 119.65905 * 179.72518 * 18 17 7 20 20 C 1.38992 * 119.04795 * 179.73367 * 19 18 17 21 21 O 1.35741 * 120.81555 * 180.28081 * 20 19 18 22 22 C 1.42898 * 117.00171 * 0.26237 * 21 20 19 23 23 C 1.39441 * 118.36916 * 0.53387 * 20 19 18 24 24 N 1.48017 * 120.39097 * 179.74964 * 23 20 19 25 25 O 1.21800 * 119.99580 * 179.97438 * 24 23 20 26 26 O 1.21796 * 120.00235 * 359.97438 * 24 23 20 27 27 C 1.37828 * 119.21497 * 359.73282 * 23 20 19 28 28 N 1.32054 * 120.89548 * 359.97438 * 27 23 20 29 29 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 30 30 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 31 31 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 33 33 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 34 34 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 35 35 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 36 36 H 0.96997 * 120.00252 * 355.07231 * 12 11 9 37 37 H 1.08001 * 120.47595 * 0.02562 * 19 18 17 38 38 H 1.09001 * 109.46677 * 299.99513 * 22 21 20 39 39 H 1.08995 * 109.47285 * 59.99941 * 22 21 20 40 40 H 1.09004 * 109.46879 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.55444 * 179.97438 * 27 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3054 4.8002 0.7455 11 6 6.1922 4.8005 -1.3861 12 7 5.7350 4.1778 -2.4504 13 14 7.0691 6.4399 -1.5678 14 1 6.0788 7.5431 -1.4820 15 1 8.0709 6.5884 -0.4817 16 1 7.7547 6.4913 -2.8841 17 8 5.8952 2.2742 1.2256 18 6 7.0521 1.5665 1.1856 19 6 7.5393 0.9817 2.3449 20 6 8.7227 0.2549 2.2883 21 8 9.2290 -0.3372 3.3999 22 6 8.4890 -0.1810 4.6123 23 6 9.3798 0.1533 1.0626 24 7 10.6461 -0.6052 0.9525 25 8 11.2138 -0.6897 -0.1218 26 8 11.1203 -1.1448 1.9360 27 6 8.8361 0.7672 -0.0451 28 7 7.7065 1.4457 0.0417 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5852 3.4690 0.8905 35 1 3.5844 3.4701 -0.8894 36 1 5.3437 3.2944 -2.3648 37 1 7.0044 1.0857 3.2774 38 1 8.4094 0.8786 4.8553 39 1 7.4911 -0.6007 4.4856 40 1 9.0025 -0.7012 5.4209 41 1 9.3407 0.6924 -0.9971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226581283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = -151.308066 kcal Electronic energy + Delta-G solvation = -30134.245217 eV Core-core repulsion = 25597.222464 eV Total energy + Delta-G solvation = -4537.022752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.34760 -42.12647 -41.57995 -40.36668 -38.94026 -37.68444 -37.54731 -35.73540 -33.36172 -33.12585 -32.66150 -31.65786 -28.82195 -27.88527 -27.41548 -25.29435 -24.44891 -24.04253 -23.29307 -21.82095 -20.70317 -20.27342 -20.02973 -19.39011 -18.70169 -18.61745 -18.21806 -18.00974 -17.57576 -17.22663 -17.16864 -16.48560 -16.09483 -15.90080 -15.63947 -15.47561 -14.98921 -14.78895 -14.47238 -14.11895 -13.97161 -13.64534 -13.40664 -13.12269 -12.90450 -12.87091 -12.75621 -12.66163 -12.64692 -12.56486 -12.36659 -12.23804 -12.16188 -11.97391 -11.64461 -11.60084 -11.05942 -10.94433 -10.61188 -10.55136 -10.06442 -8.74392 -6.54691 -1.19983 -0.27095 0.24206 0.29703 1.09235 1.51911 1.54885 1.56858 1.67473 1.78537 1.96790 2.20820 2.49867 2.86053 3.09221 3.10890 3.32268 3.59924 3.75438 3.92372 3.97210 4.03228 4.17438 4.21463 4.24582 4.25158 4.26456 4.29460 4.48550 4.64844 4.73962 4.83513 4.86665 4.97819 5.08785 5.19940 5.36529 5.62929 5.66787 5.81233 6.21612 6.39232 6.43898 6.59683 6.66594 7.26983 8.62181 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007904 B = 0.004400 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.572151 B = 6361.966059 C = 8676.180952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.362 6.362 4 C 0.464 3.536 5 O -0.537 6.537 6 C -0.100 4.100 7 C 0.214 3.786 8 H 0.043 0.957 9 C -0.622 4.622 10 H 0.055 0.945 11 C -0.002 4.002 12 N -0.911 5.911 13 Si 1.112 2.888 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.284 1.284 17 O -0.295 6.295 18 C 0.413 3.587 19 C -0.293 4.293 20 C 0.266 3.734 21 O -0.284 6.284 22 C 0.003 3.997 23 C -0.195 4.195 24 N 0.057 4.943 25 O -0.195 6.195 26 O -0.160 6.160 27 C 0.253 3.747 28 N -0.555 5.555 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.260 0.740 37 H 0.191 0.809 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.141 0.859 41 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -6.744 11.315 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.427 6.427 6 C -0.138 4.138 7 C 0.159 3.841 8 H 0.061 0.939 9 C -0.659 4.659 10 H 0.073 0.927 11 C -0.204 4.204 12 N -0.546 5.546 13 Si 0.934 3.066 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.210 1.210 17 O -0.200 6.200 18 C 0.236 3.764 19 C -0.315 4.315 20 C 0.210 3.790 21 O -0.193 6.193 22 C -0.090 4.090 23 C -0.286 4.286 24 N 0.570 4.430 25 O -0.401 6.401 26 O -0.376 6.376 27 C 0.091 3.909 28 N -0.282 5.282 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.208 0.792 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.159 0.841 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.043 -5.206 9.838 12.220 hybrid contribution 0.065 -1.837 1.364 2.289 sum -4.978 -7.043 11.201 14.137 Atomic orbital electron populations 1.21816 0.89764 1.04531 1.03833 1.23321 0.97563 0.79383 1.02190 1.86543 1.23774 1.33811 1.83754 1.24345 0.80665 0.93149 0.70949 1.90600 1.61159 1.44079 1.46869 1.21907 0.95472 0.89859 1.06550 1.20020 0.89168 0.93551 0.81373 0.93918 1.22255 1.47221 1.00718 0.95698 0.92685 1.27036 0.94592 1.07417 0.91361 1.70907 1.37067 1.14313 1.32310 0.82966 0.76061 0.71517 0.76009 1.18946 1.20498 1.20999 1.86097 1.33432 1.60963 1.39457 1.20107 0.84648 0.82917 0.88716 1.21166 0.99737 1.09651 1.00976 1.18456 0.88477 0.86032 0.86050 1.86376 1.49338 1.67189 1.16347 1.23803 0.98156 1.04600 0.82400 1.21569 0.93641 1.16458 0.96903 1.43068 1.01194 0.98638 1.00133 1.94509 1.62052 1.67139 1.16435 1.94517 1.68032 1.46537 1.28544 1.22649 0.87549 0.83098 0.97654 1.67957 1.10104 1.22397 1.27722 0.90929 0.91368 0.87825 0.92055 0.91409 0.86145 0.86874 0.92883 0.79230 0.90309 0.90486 0.84142 0.78260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 10.29 71.98 0.74 -1.66 16 2 C 0.05 1.24 6.19 71.98 0.45 1.69 16 3 O -0.36 -11.80 10.22 -51.33 -0.52 -12.32 16 4 C 0.46 18.03 7.84 71.24 0.56 18.59 16 5 O -0.54 -23.47 15.18 26.93 0.41 -23.06 16 6 C -0.10 -4.07 5.38 29.85 0.16 -3.91 16 7 C 0.21 10.06 1.04 29.85 0.03 10.09 16 8 H 0.04 2.28 5.59 -2.38 -0.01 2.27 16 9 C -0.62 -31.58 8.64 25.60 0.22 -31.36 16 10 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 11 C 0.00 -0.09 5.45 84.66 0.46 0.37 16 12 N -0.91 -50.25 13.63 21.45 0.29 -49.95 16 13 Si 1.11 46.52 29.91 68.60 2.05 48.57 16 14 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 15 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 17 O -0.30 -12.89 9.01 -76.69 -0.69 -13.58 16 18 C 0.41 16.74 7.44 84.72 0.63 17.37 16 19 C -0.29 -9.24 9.04 22.56 0.20 -9.04 16 20 C 0.27 8.25 6.71 22.74 0.15 8.40 16 21 O -0.28 -7.39 8.66 -70.04 -0.61 -8.00 16 22 C 0.00 0.05 9.84 113.37 1.12 1.17 16 23 C -0.20 -6.73 6.89 36.57 0.25 -6.48 16 24 N 0.06 2.01 4.45 -46.00 -0.20 1.80 16 25 O -0.19 -6.93 18.47 18.89 0.35 -6.58 16 26 O -0.16 -5.62 17.37 25.46 0.44 -5.18 16 27 C 0.25 9.21 10.70 84.56 0.91 10.12 16 28 N -0.55 -23.71 8.64 -309.13 -2.67 -26.38 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 33 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 34 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 35 H 0.11 4.77 7.84 -2.39 -0.02 4.76 16 36 H 0.26 14.61 6.39 -92.71 -0.59 14.02 16 37 H 0.19 4.59 6.46 -2.91 -0.02 4.57 16 38 H 0.08 1.01 7.70 -2.39 -0.02 0.99 16 39 H 0.08 1.00 7.72 -2.39 -0.02 0.98 16 40 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.20 6.40 7.61 -2.91 -0.02 6.37 16 Total: -1.00 -67.56 366.41 5.98 -61.58 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.26 Total: 17.76 kcal Atomic # 6 Polarization: 9.47 SS G_CDS: 5.88 Total: 15.34 kcal Atomic # 7 Polarization: -71.95 SS G_CDS: -2.58 Total: -74.53 kcal Atomic # 8 Polarization: -68.10 SS G_CDS: -0.62 Total: -68.72 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.05 Total: 48.57 kcal Total: -67.56 5.98 -61.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226581283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.731 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds