Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.46910 * 2 1 4 4 C 1.34234 * 116.99817 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99908 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47288 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46935 * 54.99925 * 7 6 4 9 9 C 1.50703 * 109.47309 * 174.99533 * 7 6 4 10 10 H 1.07996 * 120.00297 * 239.99934 * 9 7 6 11 11 C 1.37873 * 119.99465 * 60.00308 * 9 7 6 12 12 N 1.31514 * 120.00595 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99701 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47177 * 60.00195 * 13 11 9 15 15 H 1.48500 * 109.47066 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47060 * 300.00027 * 13 11 9 17 17 O 1.42899 * 109.47272 * 295.00078 * 7 6 4 18 18 C 1.35742 * 117.00282 * 155.70258 * 17 7 6 19 19 C 1.39041 * 120.81435 * 5.41495 * 18 17 7 20 20 C 1.38636 * 119.04556 * 179.97438 * 19 18 17 21 21 O 1.35684 * 119.65155 * 179.97438 * 20 19 18 22 22 N 1.32363 * 120.69425 * 359.97438 * 20 19 18 23 23 C 1.32016 * 121.78437 * 359.97438 * 22 20 19 24 24 C 1.50709 * 119.55471 * 179.97438 * 23 22 20 25 25 C 1.37871 * 120.89025 * 359.74231 * 23 22 20 26 26 N 1.48023 * 120.39338 * 180.26009 * 25 23 22 27 27 O 1.21798 * 119.99996 * 270.25399 * 26 25 23 28 28 O 1.21806 * 119.99598 * 90.25178 * 26 25 23 29 29 H 1.08996 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47107 * 299.99737 * 1 2 3 31 31 H 1.08999 * 109.47141 * 59.99917 * 1 2 3 32 32 H 1.08999 * 109.47003 * 240.00571 * 2 1 3 33 33 H 1.08999 * 109.47141 * 120.00083 * 2 1 3 34 34 H 1.09005 * 109.47138 * 299.99806 * 6 4 3 35 35 H 1.09004 * 109.47443 * 59.99467 * 6 4 3 36 36 H 0.96992 * 120.00386 * 179.97438 * 12 11 9 37 37 H 1.08005 * 120.47631 * 359.97438 * 19 18 17 38 38 H 0.96698 * 114.00000 * 89.99986 * 21 20 19 39 39 H 1.08999 * 109.46541 * 90.00386 * 24 23 22 40 40 H 1.09000 * 109.47167 * 210.00030 * 24 23 22 41 41 H 1.08999 * 109.47020 * 330.00240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8575 0.0023 8 1 5.7812 2.2499 -0.8393 9 6 6.0244 4.2447 -0.1210 10 1 6.6598 4.4932 -0.9581 11 6 5.7400 5.1965 0.8350 12 7 4.9659 4.8941 1.8543 13 14 6.4543 6.9159 0.6826 14 1 5.9924 7.5331 -0.5866 15 1 6.0015 7.7434 1.8295 16 1 7.9372 6.8377 0.6841 17 8 5.8936 2.2638 1.2236 18 6 7.1083 1.6582 1.2077 19 6 7.9211 1.7216 0.0815 20 6 9.1551 1.0901 0.1055 21 8 9.9580 1.1437 -0.9870 22 7 9.5582 0.4355 1.1830 23 6 8.8115 0.3570 2.2689 24 6 9.3200 -0.4022 3.4674 25 6 7.5748 0.9641 2.3229 26 7 6.7492 0.8738 3.5481 27 8 5.9642 -0.0470 3.6870 28 8 6.8548 1.7205 4.4174 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5851 3.4699 -0.8889 35 1 3.5844 3.4694 0.8911 36 1 4.7661 5.5636 2.5270 37 1 7.5959 2.2551 -0.7995 38 1 10.5628 1.8982 -0.9939 39 1 9.8760 0.2741 4.1166 40 1 8.4768 -0.8215 4.0164 41 1 9.9747 -1.2081 3.1360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228685060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -135.404621 kcal Electronic energy + Delta-G solvation = -31081.018003 eV Core-core repulsion = 26544.684876 eV Total energy + Delta-G solvation = -4536.333127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71878 -40.39791 -39.90362 -38.29343 -37.05515 -36.08244 -35.85793 -33.77539 -32.12011 -31.75480 -31.52034 -30.29844 -28.27446 -26.58476 -25.47171 -23.60338 -22.73398 -22.50283 -21.48265 -20.11474 -18.89068 -18.85502 -18.21033 -17.80564 -17.54929 -17.00982 -16.31293 -16.03529 -15.75291 -15.72152 -15.37359 -14.81038 -14.29980 -14.10685 -13.90795 -13.74315 -13.56521 -12.97894 -12.71743 -12.62545 -12.55073 -12.30749 -12.01860 -11.76808 -11.70993 -11.58418 -11.34333 -11.21047 -11.06320 -11.04398 -10.82500 -10.63131 -10.50987 -10.22473 -9.99604 -9.89929 -9.72800 -9.60234 -9.02582 -9.00375 -8.38909 -6.52019 -4.77511 0.76036 1.15920 1.44190 1.95923 2.84532 3.03232 3.12007 3.13624 3.18759 3.35378 3.57597 3.72961 4.02960 4.47846 4.74837 4.90421 5.01684 5.05639 5.10192 5.27040 5.29357 5.41714 5.43766 5.45307 5.59734 5.77584 5.83730 5.86999 5.93416 6.01987 6.05023 6.10766 6.29153 6.49253 6.80733 6.87402 7.01455 7.34397 7.45394 7.49899 7.82321 7.88651 8.21825 8.31714 8.39420 9.02611 10.49553 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.005656 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.865407 B = 4948.958242 C = 6569.301350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.364 6.364 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.101 4.101 7 C 0.218 3.782 8 H 0.042 0.958 9 C -0.573 4.573 10 H 0.075 0.925 11 C 0.086 3.914 12 N -0.848 5.848 13 Si 0.903 3.097 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.273 1.273 17 O -0.267 6.267 18 C 0.283 3.717 19 C -0.264 4.264 20 C 0.368 3.632 21 O -0.477 6.477 22 N -0.529 5.529 23 C 0.233 3.767 24 C -0.116 4.116 25 C -0.152 4.152 26 N 0.046 4.954 27 O -0.153 6.153 28 O -0.136 6.136 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.276 0.724 37 H 0.168 0.832 38 H 0.405 0.595 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 -5.131 -2.511 5.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.281 6.281 4 C 0.300 3.700 5 O -0.404 6.404 6 C -0.139 4.139 7 C 0.165 3.835 8 H 0.060 0.940 9 C -0.609 4.609 10 H 0.093 0.907 11 C -0.124 4.124 12 N -0.481 5.481 13 Si 0.729 3.271 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.198 1.198 17 O -0.173 6.173 18 C 0.223 3.777 19 C -0.286 4.286 20 C 0.193 3.807 21 O -0.285 6.285 22 N -0.255 5.255 23 C 0.092 3.908 24 C -0.173 4.173 25 C -0.237 4.237 26 N 0.576 4.424 27 O -0.374 6.374 28 O -0.362 6.362 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.161 0.839 36 H 0.086 0.914 37 H 0.186 0.814 38 H 0.264 0.736 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.541 -6.150 -3.122 7.067 hybrid contribution -0.371 1.672 0.077 1.715 sum 1.169 -4.478 -3.045 5.540 Atomic orbital electron populations 1.21778 0.93127 1.02460 1.03340 1.22907 0.94971 0.81402 1.02254 1.86551 1.25686 1.31363 1.84541 1.24751 0.79848 0.94060 0.71329 1.90613 1.60299 1.43623 1.45850 1.21798 0.95472 0.88743 1.07869 1.20168 0.89749 0.93050 0.80541 0.93959 1.21319 1.34117 0.94264 1.11229 0.90711 1.25123 0.93526 0.99563 0.94169 1.69811 1.32678 1.35270 1.10322 0.86456 0.79787 0.82601 0.78218 1.19550 1.20576 1.19776 1.86402 1.26422 1.62951 1.41538 1.18550 0.86822 0.83179 0.89139 1.22217 0.96747 1.08443 1.01230 1.18944 0.88274 0.88934 0.84550 1.84717 1.54239 1.52875 1.36673 1.67225 1.35457 1.23196 0.99613 1.20294 0.85820 0.90829 0.93816 1.20928 1.02760 1.00501 0.93145 1.21150 0.97300 1.17146 0.88119 1.42962 0.99220 0.99042 1.01196 1.94501 1.31672 1.26406 1.84782 1.94525 1.71942 1.34240 1.35451 0.90695 0.91506 0.91739 0.91818 0.91431 0.87144 0.83943 0.91384 0.81442 0.73587 0.88838 0.90561 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.36 -6.62 10.22 -39.27 -0.40 -7.02 16 4 C 0.46 9.47 7.84 36.00 0.28 9.75 16 5 O -0.52 -11.86 15.17 -24.05 -0.36 -12.22 16 6 C -0.10 -2.15 5.22 -27.89 -0.15 -2.29 16 7 C 0.22 4.93 1.35 -27.88 -0.04 4.90 16 8 H 0.04 0.93 6.22 -51.93 -0.32 0.60 16 9 C -0.57 -13.37 8.00 -34.44 -0.28 -13.65 16 10 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.09 2.07 5.24 -17.82 -0.09 1.98 16 12 N -0.85 -21.43 10.93 55.43 0.61 -20.82 16 13 Si 0.90 18.77 29.54 -169.99 -5.02 13.75 16 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 16 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 17 O -0.27 -6.54 8.26 -33.38 -0.28 -6.82 16 18 C 0.28 6.34 6.63 -38.86 -0.26 6.08 16 19 C -0.26 -5.15 8.70 -39.14 -0.34 -5.49 16 20 C 0.37 6.44 7.74 -17.18 -0.13 6.30 16 21 O -0.48 -6.78 13.56 -18.75 -0.25 -7.03 16 22 N -0.53 -9.42 10.30 -9.62 -0.10 -9.51 16 23 C 0.23 4.21 6.77 -82.64 -0.56 3.65 16 24 C -0.12 -1.62 9.92 36.01 0.36 -1.26 16 25 C -0.15 -3.22 6.16 -79.65 -0.49 -3.71 16 26 N 0.05 1.02 3.12 34.11 0.11 1.12 16 27 O -0.15 -3.43 19.11 -29.46 -0.56 -3.99 16 28 O -0.14 -3.07 19.26 -29.46 -0.57 -3.64 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 35 H 0.14 3.32 6.22 -51.93 -0.32 3.00 16 36 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.17 3.17 5.84 -52.48 -0.31 2.86 16 38 H 0.41 3.58 9.06 45.56 0.41 3.99 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.08 7.29 -51.93 -0.38 0.70 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -30.44 366.69 -6.23 -36.68 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -3.84 Total: 7.88 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.08 Total: 6.11 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.61 Total: -29.22 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -2.43 Total: -40.73 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.44 -6.23 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228685060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.726 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds