Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45205 * 109.46910 * 2 1 4 4 C 1.34234 * 116.99817 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99954 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99908 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47288 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.46935 * 54.99925 * 7 6 4 9 9 C 1.50703 * 109.47309 * 174.99533 * 7 6 4 10 10 H 1.07996 * 120.00297 * 239.99934 * 9 7 6 11 11 C 1.37873 * 119.99465 * 60.00308 * 9 7 6 12 12 N 1.31514 * 120.00595 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99701 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47177 * 60.00195 * 13 11 9 15 15 H 1.48500 * 109.47066 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47060 * 300.00027 * 13 11 9 17 17 O 1.42899 * 109.47272 * 295.00078 * 7 6 4 18 18 C 1.35742 * 117.00282 * 155.70258 * 17 7 6 19 19 C 1.39041 * 120.81435 * 5.41495 * 18 17 7 20 20 C 1.38636 * 119.04556 * 179.97438 * 19 18 17 21 21 O 1.35684 * 119.65155 * 179.97438 * 20 19 18 22 22 N 1.32363 * 120.69425 * 359.97438 * 20 19 18 23 23 C 1.32016 * 121.78437 * 359.97438 * 22 20 19 24 24 C 1.50709 * 119.55471 * 179.97438 * 23 22 20 25 25 C 1.37871 * 120.89025 * 359.74231 * 23 22 20 26 26 N 1.48023 * 120.39338 * 180.26009 * 25 23 22 27 27 O 1.21798 * 119.99996 * 270.25399 * 26 25 23 28 28 O 1.21806 * 119.99598 * 90.25178 * 26 25 23 29 29 H 1.08996 * 109.46584 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47107 * 299.99737 * 1 2 3 31 31 H 1.08999 * 109.47141 * 59.99917 * 1 2 3 32 32 H 1.08999 * 109.47003 * 240.00571 * 2 1 3 33 33 H 1.08999 * 109.47141 * 120.00083 * 2 1 3 34 34 H 1.09005 * 109.47138 * 299.99806 * 6 4 3 35 35 H 1.09004 * 109.47443 * 59.99467 * 6 4 3 36 36 H 0.96992 * 120.00386 * 179.97438 * 12 11 9 37 37 H 1.08005 * 120.47631 * 359.97438 * 19 18 17 38 38 H 0.96698 * 114.00000 * 89.99986 * 21 20 19 39 39 H 1.08999 * 109.46541 * 90.00386 * 24 23 22 40 40 H 1.09000 * 109.47167 * 210.00030 * 24 23 22 41 41 H 1.08999 * 109.47020 * 330.00240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0012 7 6 5.4486 2.8575 0.0023 8 1 5.7812 2.2499 -0.8393 9 6 6.0244 4.2447 -0.1210 10 1 6.6598 4.4932 -0.9581 11 6 5.7400 5.1965 0.8350 12 7 4.9659 4.8941 1.8543 13 14 6.4543 6.9159 0.6826 14 1 5.9924 7.5331 -0.5866 15 1 6.0015 7.7434 1.8295 16 1 7.9372 6.8377 0.6841 17 8 5.8936 2.2638 1.2236 18 6 7.1083 1.6582 1.2077 19 6 7.9211 1.7216 0.0815 20 6 9.1551 1.0901 0.1055 21 8 9.9580 1.1437 -0.9870 22 7 9.5582 0.4355 1.1830 23 6 8.8115 0.3570 2.2689 24 6 9.3200 -0.4022 3.4674 25 6 7.5748 0.9641 2.3229 26 7 6.7492 0.8738 3.5481 27 8 5.9642 -0.0470 3.6870 28 8 6.8548 1.7205 4.4174 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5851 3.4699 -0.8889 35 1 3.5844 3.4694 0.8911 36 1 4.7661 5.5636 2.5270 37 1 7.5959 2.2551 -0.7995 38 1 10.5628 1.8982 -0.9939 39 1 9.8760 0.2741 4.1166 40 1 8.4768 -0.8215 4.0164 41 1 9.9747 -1.2081 3.1360 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228685060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -155.857876 kcal Electronic energy + Delta-G solvation = -31081.904923 eV Core-core repulsion = 26544.684876 eV Total energy + Delta-G solvation = -4537.220047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.38684 -41.95761 -41.46880 -39.87703 -38.37059 -37.63179 -37.60568 -35.51430 -33.49688 -33.32447 -32.79627 -31.88201 -29.66785 -28.30794 -27.04749 -25.12903 -24.05441 -24.01784 -22.98441 -21.72099 -20.50176 -20.28715 -19.95081 -19.39206 -19.18087 -18.58655 -17.86735 -17.57747 -17.34963 -17.30052 -16.84581 -16.46284 -15.75821 -15.61176 -15.28212 -15.13102 -15.02169 -14.35081 -14.16419 -13.90224 -13.79621 -13.65478 -13.41158 -13.15153 -13.06169 -12.94447 -12.84945 -12.82167 -12.67512 -12.52844 -12.47345 -12.33061 -12.28877 -11.70916 -11.63496 -11.53509 -11.39901 -11.06860 -10.80256 -10.49705 -10.02334 -8.32116 -6.62249 -0.70333 -0.59721 -0.09605 0.31906 1.19613 1.39646 1.43066 1.50865 1.73540 1.96557 2.02123 2.29956 2.31261 3.00876 3.11384 3.38286 3.50606 3.82275 3.89948 3.96565 4.05231 4.08543 4.19238 4.30623 4.32865 4.38810 4.40730 4.53168 4.70661 4.81798 4.84187 4.89798 4.94116 5.08450 5.19404 5.20336 5.43649 5.54818 5.72087 6.17596 6.28236 6.45311 6.50814 6.56479 6.75850 7.20345 8.68697 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.005656 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.865407 B = 4948.958242 C = 6569.301350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.542 6.542 6 C -0.099 4.099 7 C 0.216 3.784 8 H 0.043 0.957 9 C -0.576 4.576 10 H 0.082 0.918 11 C 0.046 3.954 12 N -0.879 5.879 13 Si 0.959 3.041 14 H -0.258 1.258 15 H -0.287 1.287 16 H -0.273 1.273 17 O -0.294 6.294 18 C 0.254 3.746 19 C -0.274 4.274 20 C 0.388 3.612 21 O -0.471 6.471 22 N -0.523 5.523 23 C 0.242 3.758 24 C -0.115 4.115 25 C -0.178 4.178 26 N 0.050 4.950 27 O -0.163 6.163 28 O -0.152 6.152 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.272 0.728 37 H 0.170 0.830 38 H 0.432 0.568 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -5.497 -3.561 6.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.306 3.694 5 O -0.432 6.432 6 C -0.136 4.136 7 C 0.163 3.837 8 H 0.061 0.939 9 C -0.612 4.612 10 H 0.100 0.900 11 C -0.160 4.160 12 N -0.513 5.513 13 Si 0.784 3.216 14 H -0.183 1.183 15 H -0.212 1.212 16 H -0.198 1.198 17 O -0.202 6.202 18 C 0.195 3.805 19 C -0.297 4.297 20 C 0.213 3.787 21 O -0.283 6.283 22 N -0.250 5.250 23 C 0.101 3.899 24 C -0.171 4.171 25 C -0.263 4.263 26 N 0.578 4.422 27 O -0.383 6.383 28 O -0.376 6.376 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.187 0.813 38 H 0.296 0.704 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.629 -6.496 -4.187 8.163 hybrid contribution -0.647 1.669 0.326 1.820 sum 1.981 -4.826 -3.861 6.491 Atomic orbital electron populations 1.21807 0.89735 1.04522 1.03749 1.23301 0.97597 0.79527 1.02057 1.86536 1.24071 1.33663 1.83866 1.24593 0.80584 0.93512 0.70726 1.90592 1.61114 1.44303 1.47231 1.21709 0.95031 0.89143 1.07722 1.20205 0.90403 0.92761 0.80296 0.93909 1.21556 1.33858 0.94623 1.11212 0.89999 1.25789 0.93763 1.02593 0.93882 1.69953 1.34239 1.35981 1.11118 0.85582 0.78853 0.78898 0.78282 1.18255 1.21213 1.19824 1.86347 1.27746 1.63947 1.42122 1.18971 0.86854 0.84109 0.90568 1.22256 0.97402 1.09462 1.00562 1.18976 0.87851 0.87053 0.84841 1.84670 1.54308 1.54304 1.35003 1.67442 1.34830 1.23149 0.99547 1.20964 0.84436 0.89499 0.94986 1.21093 1.03144 1.01193 0.91705 1.21483 0.98481 1.18980 0.87377 1.43136 0.99029 0.98584 1.01456 1.94476 1.32112 1.26645 1.85076 1.94503 1.72329 1.34454 1.36275 0.87760 0.91599 0.90803 0.91227 0.92523 0.85153 0.86068 0.91879 0.81300 0.70422 0.86782 0.91013 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 10.29 71.98 0.74 -2.08 16 2 C 0.05 1.42 6.19 71.98 0.45 1.86 16 3 O -0.36 -13.33 10.22 -51.46 -0.53 -13.86 16 4 C 0.46 19.54 7.84 71.23 0.56 20.10 16 5 O -0.54 -25.54 15.17 27.05 0.41 -25.13 16 6 C -0.10 -4.28 5.22 29.85 0.16 -4.12 16 7 C 0.22 9.99 1.35 29.85 0.04 10.03 16 8 H 0.04 1.92 6.22 -2.39 -0.01 1.90 16 9 C -0.58 -27.00 8.00 25.60 0.20 -26.80 16 10 H 0.08 3.61 7.81 -2.91 -0.02 3.59 16 11 C 0.05 2.24 5.24 84.65 0.44 2.68 16 12 N -0.88 -45.58 10.93 21.45 0.23 -45.35 16 13 Si 0.96 38.39 29.54 68.60 2.03 40.41 16 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 15 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 O -0.29 -14.84 8.26 -76.84 -0.63 -15.48 16 18 C 0.25 11.53 6.63 22.74 0.15 11.69 16 19 C -0.27 -10.61 8.70 22.56 0.20 -10.41 16 20 C 0.39 12.85 7.74 84.71 0.66 13.51 16 21 O -0.47 -11.96 13.56 -90.02 -1.22 -13.18 16 22 N -0.52 -17.47 10.30 -297.16 -3.06 -20.53 16 23 C 0.24 8.41 6.77 42.45 0.29 8.70 16 24 C -0.11 -2.95 9.92 71.24 0.71 -2.24 16 25 C -0.18 -7.58 6.16 36.57 0.23 -7.36 16 26 N 0.05 2.26 3.12 -46.00 -0.14 2.12 16 27 O -0.16 -7.45 19.11 18.89 0.36 -7.09 16 28 O -0.15 -7.03 19.26 18.88 0.36 -6.67 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 33 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 34 H 0.13 4.93 8.14 -2.38 -0.02 4.91 16 35 H 0.12 5.87 6.22 -2.38 -0.01 5.86 16 36 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 37 H 0.17 6.36 5.84 -2.91 -0.02 6.34 16 38 H 0.43 6.10 9.06 -74.06 -0.67 5.43 16 39 H 0.11 2.51 8.14 -2.39 -0.02 2.50 16 40 H 0.07 1.94 7.29 -2.39 -0.02 1.92 16 41 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -66.75 366.69 3.06 -63.69 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.44 Total: 25.50 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 4.81 Total: 15.57 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -2.97 Total: -63.77 kcal Atomic # 8 Polarization: -80.16 SS G_CDS: -1.25 Total: -81.41 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.41 kcal Total: -66.75 3.06 -63.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228685060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.165 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds