Wall clock time and date at job start Sat Apr 11 2020 05:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45199 * 109.47117 * 2 1 4 4 C 1.34227 * 116.99957 * 179.97438 * 3 2 1 5 5 O 1.20818 * 120.00212 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99834 * 180.02562 * 4 3 2 7 7 C 1.53009 * 109.47167 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.46770 * 54.51286 * 7 6 4 9 9 C 1.50692 * 109.47072 * 174.51902 * 7 6 4 10 10 H 1.07994 * 120.00450 * 95.17704 * 9 7 6 11 11 C 1.37881 * 119.99904 * 275.17387 * 9 7 6 12 12 N 1.31514 * 120.00183 * 355.11685 * 11 9 7 13 13 Si 1.86806 * 119.99909 * 175.12070 * 11 9 7 14 14 H 1.48498 * 109.47003 * 89.99981 * 13 11 9 15 15 H 1.48505 * 109.46863 * 210.00034 * 13 11 9 16 16 H 1.48502 * 109.47115 * 329.99855 * 13 11 9 17 17 O 1.42897 * 109.46864 * 294.51985 * 7 6 4 18 18 C 1.35956 * 116.99912 * 155.33929 * 17 7 6 19 19 C 1.38910 * 119.94423 * 5.26920 * 18 17 7 20 20 C 1.38156 * 120.29403 * 179.72441 * 19 18 17 21 21 C 1.38302 * 120.18681 * 0.54487 * 20 19 18 22 22 F 1.35102 * 120.05943 * 179.70426 * 21 20 19 23 23 C 1.39861 * 119.88417 * 359.73026 * 21 20 19 24 24 C 1.47568 * 120.14320 * 179.97438 * 23 21 20 25 25 O 1.21490 * 120.00470 * 0.02562 * 24 23 21 26 26 O 1.34738 * 119.99683 * 180.02562 * 24 23 21 27 27 C 1.45204 * 117.00008 * 180.02562 * 26 24 23 28 28 C 1.38318 * 119.94126 * 185.54159 * 18 17 7 29 29 H 1.08998 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46825 * 300.00174 * 1 2 3 31 31 H 1.09005 * 109.46826 * 59.99674 * 1 2 3 32 32 H 1.09004 * 109.47097 * 240.00435 * 2 1 3 33 33 H 1.08996 * 109.47399 * 120.00272 * 2 1 3 34 34 H 1.08994 * 109.47484 * 60.00287 * 6 4 3 35 35 H 1.09004 * 109.47317 * 299.99796 * 6 4 3 36 36 H 0.96999 * 119.99672 * 5.11672 * 12 11 9 37 37 H 1.08004 * 119.85094 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.90425 * 180.25271 * 20 19 18 39 39 H 1.09004 * 109.46775 * 59.99305 * 27 26 24 40 40 H 1.08994 * 109.46981 * 179.97438 * 27 26 24 41 41 H 1.08996 * 109.46851 * 299.99999 * 27 26 24 42 42 H 1.07998 * 120.09723 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4487 2.8574 0.0010 8 1 5.7802 2.2430 -0.8360 9 6 6.0243 4.2435 -0.1340 10 1 6.3133 4.7965 0.7474 11 6 6.1821 4.8057 -1.3831 12 7 5.9210 4.0981 -2.4605 13 14 6.7668 6.5725 -1.5450 14 1 8.2497 6.5982 -1.6192 15 1 6.1988 7.1706 -2.7799 16 1 6.3166 7.3530 -0.3646 17 8 5.8951 2.2735 1.2265 18 6 7.1084 1.6601 1.2120 19 6 7.9004 1.7168 0.0722 20 6 9.1369 1.1009 0.0515 21 6 9.5902 0.4135 1.1627 22 9 10.7972 -0.1928 1.1376 23 6 8.7966 0.3468 2.3125 24 6 9.2743 -0.3855 3.5012 25 8 10.3593 -0.9317 3.4828 26 8 8.5071 -0.4483 4.6071 27 6 9.0410 -1.1851 5.7387 28 6 7.5495 0.9760 2.3303 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5845 3.4693 0.8911 35 1 3.5851 3.4698 -0.8888 36 1 5.5472 3.2070 -2.3766 37 1 7.5497 2.2481 -0.8003 38 1 9.7493 1.1523 -0.8367 39 1 9.9789 -0.7308 6.0582 40 1 8.3255 -1.1572 6.5605 41 1 9.2194 -2.2200 5.4469 42 1 6.9318 0.9288 3.2149 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229019249.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:13 Heat of formation + Delta-G solvation = -236.456042 kcal Electronic energy + Delta-G solvation = -29765.846307 eV Core-core repulsion = 25205.211300 eV Total energy + Delta-G solvation = -4560.635007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.50998 -40.39067 -40.10750 -39.24855 -37.00621 -36.31939 -36.00028 -33.80334 -31.79838 -31.43364 -30.68504 -28.78506 -27.73705 -26.06504 -24.16366 -23.43423 -22.33494 -22.20952 -20.82252 -20.07320 -18.40101 -17.69709 -17.29753 -17.04635 -16.70567 -16.43626 -16.37381 -16.07435 -15.90795 -15.50051 -15.18925 -14.46454 -14.14428 -14.04406 -13.97941 -13.68264 -13.35252 -13.28990 -13.04644 -12.83841 -12.76862 -12.43529 -12.11753 -12.01013 -11.96754 -11.78453 -11.47746 -11.40522 -11.30499 -10.97078 -10.82153 -10.78897 -10.43850 -10.33367 -10.30839 -9.99949 -9.92790 -9.03276 -8.95426 -8.72356 -7.56720 -6.77650 -4.60688 0.82257 1.59125 2.67284 2.69494 2.72093 3.03407 3.27930 3.29380 3.45552 3.91822 3.98182 4.24314 4.48455 4.82509 4.90728 4.95196 4.99743 5.01365 5.04297 5.10912 5.18448 5.30509 5.38339 5.46665 5.53115 5.68928 5.70339 5.76429 5.91243 5.91939 5.98824 6.04656 6.21937 6.33060 6.38334 6.52161 6.55688 6.74714 6.85869 7.00792 7.47455 7.77908 7.87096 8.22588 8.27870 8.37952 9.13565 10.55553 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007760 B = 0.004226 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.260505 B = 6624.156788 C = 9257.677120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.507 6.507 6 C -0.101 4.101 7 C 0.206 3.794 8 H 0.048 0.952 9 C -0.623 4.623 10 H 0.068 0.932 11 C 0.033 3.967 12 N -0.893 5.893 13 Si 1.072 2.928 14 H -0.283 1.283 15 H -0.281 1.281 16 H -0.283 1.283 17 O -0.309 6.309 18 C 0.154 3.846 19 C -0.122 4.122 20 C -0.129 4.129 21 C 0.106 3.894 22 F -0.127 7.127 23 C -0.137 4.137 24 C 0.515 3.485 25 O -0.500 6.500 26 O -0.352 6.352 27 C 0.037 3.963 28 C -0.090 4.090 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.270 0.730 37 H 0.159 0.841 38 H 0.142 0.858 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.721 -6.339 7.766 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.300 3.700 5 O -0.394 6.394 6 C -0.139 4.139 7 C 0.151 3.849 8 H 0.066 0.934 9 C -0.660 4.660 10 H 0.087 0.913 11 C -0.174 4.174 12 N -0.527 5.527 13 Si 0.899 3.101 14 H -0.209 1.209 15 H -0.206 1.206 16 H -0.209 1.209 17 O -0.222 6.222 18 C 0.107 3.893 19 C -0.141 4.141 20 C -0.148 4.148 21 C 0.086 3.914 22 F -0.105 7.105 23 C -0.139 4.139 24 C 0.360 3.640 25 O -0.388 6.388 26 O -0.269 6.269 27 C -0.056 4.056 28 C -0.109 4.109 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.122 0.878 35 H 0.134 0.866 36 H 0.082 0.918 37 H 0.177 0.823 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.884 -5.683 6.838 9.347 hybrid contribution -0.146 -1.510 1.001 1.818 sum -3.030 -7.193 7.839 11.062 Atomic orbital electron populations 1.21787 0.93086 1.02522 1.03377 1.22911 0.95005 0.81346 1.02252 1.86561 1.25756 1.31470 1.84570 1.24639 0.79804 0.93966 0.71634 1.90621 1.60236 1.43366 1.45205 1.22046 0.97005 0.88955 1.05868 1.20181 0.88329 0.94500 0.81905 0.93402 1.22310 1.47123 1.00146 0.96464 0.91336 1.25990 0.94279 1.05681 0.91436 1.70869 1.39070 1.12164 1.30637 0.83474 0.76892 0.73692 0.76064 1.20945 1.20637 1.20914 1.85938 1.30106 1.67328 1.38822 1.18711 0.86544 0.91226 0.92859 1.21787 0.93449 0.98976 0.99853 1.20908 0.97425 0.98941 0.97530 1.17419 0.82040 0.97885 0.94068 1.91526 1.41326 1.80881 1.96785 1.18658 0.97047 1.06291 0.91914 1.20921 0.82417 0.77869 0.82806 1.90864 1.21445 1.43609 1.82927 1.86578 1.48171 1.69080 1.23066 1.23257 1.00349 0.96005 0.86024 1.20442 0.94479 0.97360 0.98627 0.90658 0.91614 0.91580 0.91625 0.91610 0.87783 0.86574 0.91814 0.82338 0.84005 0.91888 0.88024 0.91924 0.83594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -6.08 10.22 -39.25 -0.40 -6.48 16 4 C 0.46 8.75 7.84 36.01 0.28 9.03 16 5 O -0.51 -10.88 15.18 -23.93 -0.36 -11.24 16 6 C -0.10 -1.98 5.50 -27.88 -0.15 -2.13 16 7 C 0.21 4.57 0.90 -27.88 -0.03 4.54 16 8 H 0.05 1.15 4.64 -51.93 -0.24 0.91 16 9 C -0.62 -14.90 7.72 -34.44 -0.27 -15.17 16 10 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.03 0.80 5.45 -17.82 -0.10 0.70 16 12 N -0.89 -22.89 13.63 55.43 0.76 -22.14 16 13 Si 1.07 22.10 29.91 -169.99 -5.08 17.01 16 14 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 O -0.31 -6.73 9.05 -33.56 -0.30 -7.03 16 18 C 0.15 3.14 6.58 -39.30 -0.26 2.88 16 19 C -0.12 -2.43 8.70 -39.36 -0.34 -2.77 16 20 C -0.13 -2.29 10.01 -39.59 -0.40 -2.69 16 21 C 0.11 1.93 7.28 -38.95 -0.28 1.65 16 22 F -0.13 -2.37 15.54 2.25 0.04 -2.33 16 23 C -0.14 -2.46 5.88 -104.94 -0.62 -3.08 16 24 C 0.51 8.85 7.89 34.54 0.27 9.12 16 25 O -0.50 -9.45 15.12 -19.26 -0.29 -9.74 16 26 O -0.35 -5.14 9.82 -40.60 -0.40 -5.54 16 27 C 0.04 0.39 10.57 101.05 1.07 1.46 16 28 C -0.09 -1.63 9.55 -39.01 -0.37 -2.00 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 33 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 35 H 0.12 2.29 8.14 -51.93 -0.42 1.86 16 36 H 0.27 6.90 6.66 -40.82 -0.27 6.63 16 37 H 0.16 3.46 5.66 -52.48 -0.30 3.16 16 38 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.15 2.41 7.61 -52.49 -0.40 2.01 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -29.07 371.96 -6.09 -35.16 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.06 Total: 5.25 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.58 Total: 1.47 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.76 Total: -22.14 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.76 Total: -40.03 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.08 Total: 17.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.07 -6.09 -35.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229019249.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.295 kcal (2) G-P(sol) polarization free energy of solvation -29.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds