Wall clock time and date at job start Sat Apr 11 2020 05:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47184 * 2 1 4 4 C 1.34235 * 117.00016 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99983 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99816 * 179.97438 * 4 3 2 7 7 C 1.53007 * 109.46937 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.46875 * 54.43608 * 7 6 4 9 9 C 1.50701 * 109.47190 * 174.43703 * 7 6 4 10 10 H 1.07998 * 119.99910 * 245.37526 * 9 7 6 11 11 C 1.37884 * 119.99991 * 65.37482 * 9 7 6 12 12 N 1.31521 * 119.99816 * 355.12714 * 11 9 7 13 13 Si 1.86795 * 119.99989 * 175.12970 * 11 9 7 14 14 H 1.48500 * 109.47189 * 94.99677 * 13 11 9 15 15 H 1.48499 * 109.47083 * 215.00074 * 13 11 9 16 16 H 1.48503 * 109.46915 * 334.99852 * 13 11 9 17 17 O 1.42896 * 109.46931 * 294.43562 * 7 6 4 18 18 C 1.35763 * 117.00135 * 155.30344 * 17 7 6 19 19 C 1.38946 * 119.90925 * 5.52506 * 18 17 7 20 20 C 1.37704 * 120.12433 * 179.97438 * 19 18 17 21 21 C 1.39783 * 119.94143 * 0.02562 * 20 19 18 22 22 C 1.47479 * 120.08160 * 179.97438 * 21 20 19 23 23 O 1.21498 * 119.99996 * 359.97438 * 22 21 20 24 24 O 1.34749 * 119.99400 * 180.02562 * 22 21 20 25 25 C 1.45202 * 116.99596 * 180.02562 * 24 22 21 26 26 C 1.39792 * 119.83220 * 0.02562 * 21 20 19 27 27 C 1.37878 * 119.87396 * 359.72253 * 26 21 20 28 28 F 1.35108 * 119.97062 * 180.27776 * 27 26 21 29 29 H 1.09007 * 109.47028 * 59.99651 * 1 2 3 30 30 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47147 * 300.00052 * 1 2 3 32 32 H 1.09005 * 109.46993 * 240.00248 * 2 1 3 33 33 H 1.08995 * 109.47332 * 120.00117 * 2 1 3 34 34 H 1.08991 * 109.47711 * 299.99894 * 6 4 3 35 35 H 1.09010 * 109.47223 * 60.00337 * 6 4 3 36 36 H 0.96997 * 119.99454 * 179.97438 * 12 11 9 37 37 H 1.08005 * 119.93529 * 359.97438 * 19 18 17 38 38 H 1.07992 * 120.02931 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47201 * 299.99904 * 25 24 22 40 40 H 1.09008 * 109.47092 * 59.99436 * 25 24 22 41 41 H 1.08992 * 109.47324 * 179.97438 * 25 24 22 42 42 H 1.07997 * 120.06110 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9373 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7803 2.2410 -0.8367 9 6 6.0244 4.2431 -0.1394 10 1 6.5866 4.5086 -1.0225 11 6 5.8334 5.1720 0.8615 12 7 5.0695 4.8810 1.8917 13 14 6.6596 6.8439 0.7541 14 1 5.7192 7.8230 0.1523 15 1 7.0406 7.2962 2.1162 16 1 7.8759 6.7415 -0.0917 17 8 5.8951 2.2763 1.2258 18 6 7.1063 1.6631 1.2127 19 6 7.9000 1.7213 0.0737 20 6 9.1294 1.1013 0.0557 21 6 9.5796 0.4117 1.1852 22 6 10.8956 -0.2539 1.1691 23 8 11.5897 -0.2036 0.1732 24 8 11.3276 -0.9186 2.2587 25 6 12.6327 -1.5491 2.1717 26 6 8.7789 0.3536 2.3296 27 6 7.5514 0.9814 2.3414 28 9 6.7783 0.9312 3.4483 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5846 3.4693 -0.8911 35 1 3.5851 3.4698 0.8889 36 1 4.9354 5.5344 2.5960 37 1 7.5520 2.2538 -0.7991 38 1 9.7452 1.1478 -0.8302 39 1 12.6295 -2.2812 1.3641 40 1 13.3899 -0.7909 1.9717 41 1 12.8587 -2.0481 3.1140 42 1 9.1229 -0.1785 3.2041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230314058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:18 Heat of formation + Delta-G solvation = -232.422987 kcal Electronic energy + Delta-G solvation = -29856.363841 eV Core-core repulsion = 25295.903720 eV Total energy + Delta-G solvation = -4560.460121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.11133 -40.31956 -39.92531 -38.97460 -36.97087 -36.19081 -35.87798 -33.36927 -31.66517 -30.75502 -30.46202 -29.51132 -27.47918 -26.49073 -23.90009 -23.17638 -22.71436 -21.57041 -20.63325 -19.90613 -18.14947 -17.75012 -17.18821 -16.96363 -16.29827 -16.22444 -16.05514 -15.67570 -15.62030 -15.44703 -15.06682 -14.79661 -14.20961 -13.81554 -13.78128 -13.53424 -13.37754 -13.29098 -12.79602 -12.58328 -12.41903 -12.24652 -12.03962 -11.94056 -11.73653 -11.49073 -11.35633 -11.21985 -11.12778 -11.08104 -10.84958 -10.75567 -10.55812 -10.31287 -10.20237 -9.83450 -9.60700 -9.41901 -8.84865 -8.51563 -7.45014 -6.36867 -4.58119 1.13638 1.64075 2.83381 2.84736 2.91447 3.11750 3.21662 3.23755 3.27064 4.07347 4.11632 4.17797 4.70250 4.96915 5.04278 5.05034 5.07238 5.10947 5.14203 5.25339 5.32915 5.42086 5.42633 5.46928 5.62873 5.84166 5.86267 5.94805 6.02900 6.12857 6.18338 6.26361 6.40489 6.43614 6.54549 6.68557 6.77272 6.89543 7.13448 7.16943 7.52805 7.68834 7.92313 8.24141 8.41303 8.61303 9.20318 10.65130 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.003994 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.033545 B = 7009.025555 C = 9132.425183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.100 4.100 7 C 0.219 3.781 8 H 0.040 0.960 9 C -0.570 4.570 10 H 0.073 0.927 11 C 0.088 3.912 12 N -0.852 5.852 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.282 1.282 16 H -0.269 1.269 17 O -0.266 6.266 18 C 0.200 3.800 19 C -0.197 4.197 20 C -0.019 4.019 21 C -0.183 4.183 22 C 0.520 3.480 23 O -0.519 6.519 24 O -0.358 6.358 25 C 0.038 3.962 26 C -0.061 4.061 27 C 0.028 3.972 28 F -0.134 7.134 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.270 0.730 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.099 0.901 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.010 -8.494 -0.794 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.137 4.137 7 C 0.165 3.835 8 H 0.058 0.942 9 C -0.606 4.606 10 H 0.091 0.909 11 C -0.121 4.121 12 N -0.486 5.486 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.207 1.207 16 H -0.193 1.193 17 O -0.176 6.176 18 C 0.147 3.853 19 C -0.216 4.216 20 C -0.038 4.038 21 C -0.185 4.185 22 C 0.368 3.632 23 O -0.409 6.409 24 O -0.275 6.275 25 C -0.056 4.056 26 C -0.080 4.080 27 C 0.008 3.992 28 F -0.113 7.113 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.139 -8.708 -0.699 8.810 hybrid contribution 0.513 0.727 0.095 0.894 sum 1.652 -7.981 -0.605 8.173 Atomic orbital electron populations 1.21780 0.93235 1.02385 1.03345 1.22875 0.94903 0.81633 1.02119 1.86569 1.25978 1.31139 1.84636 1.24860 0.79630 0.94225 0.71196 1.90599 1.60253 1.43630 1.45866 1.21843 0.96227 0.88355 1.07309 1.19994 0.89066 0.93139 0.81259 0.94231 1.21388 1.37476 0.95433 1.06308 0.90854 1.25056 0.93603 0.98854 0.94624 1.69880 1.34200 1.35335 1.09149 0.86498 0.80127 0.83103 0.77990 1.20191 1.20747 1.19335 1.86306 1.27986 1.63855 1.39410 1.19444 0.87240 0.86856 0.91763 1.21253 0.95213 1.05459 0.99647 1.20997 0.94625 0.91694 0.96469 1.18423 0.93650 1.09515 0.96872 1.21077 0.86309 0.75483 0.80371 1.90796 1.57139 1.59335 1.33663 1.86569 1.36533 1.63910 1.40487 1.23212 0.81765 0.97373 1.03273 1.21005 0.91447 0.97159 0.98410 1.16836 0.91960 1.06463 0.83961 1.91477 1.74351 1.95293 1.50142 0.91702 0.90790 0.91566 0.91817 0.91654 0.87467 0.84472 0.91973 0.82911 0.84597 0.92035 0.92020 0.88290 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.37 -6.48 10.22 -39.27 -0.40 -6.88 16 4 C 0.46 9.25 7.84 36.00 0.28 9.53 16 5 O -0.52 -11.50 15.18 -23.90 -0.36 -11.87 16 6 C -0.10 -2.09 5.28 -27.88 -0.15 -2.24 16 7 C 0.22 4.98 1.34 -27.88 -0.04 4.94 16 8 H 0.04 0.87 6.11 -51.93 -0.32 0.55 16 9 C -0.57 -13.58 7.93 -34.44 -0.27 -13.86 16 10 H 0.07 1.70 7.82 -52.49 -0.41 1.29 16 11 C 0.09 2.14 5.26 -17.81 -0.09 2.05 16 12 N -0.85 -21.76 11.04 55.43 0.61 -21.15 16 13 Si 0.90 19.29 29.54 -169.99 -5.02 14.27 16 14 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 17 O -0.27 -6.50 8.13 -32.82 -0.27 -6.77 16 18 C 0.20 4.41 6.61 -38.97 -0.26 4.15 16 19 C -0.20 -3.87 8.68 -39.51 -0.34 -4.21 16 20 C -0.02 -0.34 9.58 -39.20 -0.38 -0.72 16 21 C -0.18 -3.17 5.87 -104.97 -0.62 -3.79 16 22 C 0.52 8.54 7.89 34.50 0.27 8.81 16 23 O -0.52 -9.32 16.13 -19.26 -0.31 -9.63 16 24 O -0.36 -5.03 9.81 -40.63 -0.40 -5.42 16 25 C 0.04 0.38 10.57 101.05 1.07 1.45 16 26 C -0.06 -1.06 9.58 -39.13 -0.38 -1.44 16 27 C 0.03 0.57 7.30 -39.37 -0.29 0.29 16 28 F -0.13 -2.91 17.10 2.25 0.04 -2.87 16 29 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.07 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16 35 H 0.14 3.16 6.47 -51.92 -0.34 2.82 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.30 16 37 H 0.15 2.94 5.65 -52.48 -0.30 2.65 16 38 H 0.14 2.16 7.64 -52.49 -0.40 1.76 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.14 2.15 7.60 -52.49 -0.40 1.75 16 LS Contribution 371.53 15.07 5.60 5.60 Total: -1.00 -29.33 371.53 -6.18 -35.52 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.10 Total: 4.34 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -0.57 Total: 4.85 kcal Atomic # 7 Polarization: -21.76 SS G_CDS: 0.61 Total: -21.15 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.74 Total: -40.57 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.87 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.33 -6.18 -35.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230314058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.907 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds