Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47184 * 2 1 4 4 C 1.34235 * 117.00016 * 180.02562 * 3 2 1 5 5 O 1.20823 * 119.99983 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.99816 * 179.97438 * 4 3 2 7 7 C 1.53007 * 109.46937 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.46875 * 54.43608 * 7 6 4 9 9 C 1.50701 * 109.47190 * 174.43703 * 7 6 4 10 10 H 1.07998 * 119.99910 * 245.37526 * 9 7 6 11 11 C 1.37884 * 119.99991 * 65.37482 * 9 7 6 12 12 N 1.31521 * 119.99816 * 355.12714 * 11 9 7 13 13 Si 1.86795 * 119.99989 * 175.12970 * 11 9 7 14 14 H 1.48500 * 109.47189 * 94.99677 * 13 11 9 15 15 H 1.48499 * 109.47083 * 215.00074 * 13 11 9 16 16 H 1.48503 * 109.46915 * 334.99852 * 13 11 9 17 17 O 1.42896 * 109.46931 * 294.43562 * 7 6 4 18 18 C 1.35763 * 117.00135 * 155.30344 * 17 7 6 19 19 C 1.38946 * 119.90925 * 5.52506 * 18 17 7 20 20 C 1.37704 * 120.12433 * 179.97438 * 19 18 17 21 21 C 1.39783 * 119.94143 * 0.02562 * 20 19 18 22 22 C 1.47479 * 120.08160 * 179.97438 * 21 20 19 23 23 O 1.21498 * 119.99996 * 359.97438 * 22 21 20 24 24 O 1.34749 * 119.99400 * 180.02562 * 22 21 20 25 25 C 1.45202 * 116.99596 * 180.02562 * 24 22 21 26 26 C 1.39792 * 119.83220 * 0.02562 * 21 20 19 27 27 C 1.37878 * 119.87396 * 359.72253 * 26 21 20 28 28 F 1.35108 * 119.97062 * 180.27776 * 27 26 21 29 29 H 1.09007 * 109.47028 * 59.99651 * 1 2 3 30 30 H 1.08995 * 109.47424 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47147 * 300.00052 * 1 2 3 32 32 H 1.09005 * 109.46993 * 240.00248 * 2 1 3 33 33 H 1.08995 * 109.47332 * 120.00117 * 2 1 3 34 34 H 1.08991 * 109.47711 * 299.99894 * 6 4 3 35 35 H 1.09010 * 109.47223 * 60.00337 * 6 4 3 36 36 H 0.96997 * 119.99454 * 179.97438 * 12 11 9 37 37 H 1.08005 * 119.93529 * 359.97438 * 19 18 17 38 38 H 1.07992 * 120.02931 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47201 * 299.99904 * 25 24 22 40 40 H 1.09008 * 109.47092 * 59.99436 * 25 24 22 41 41 H 1.08992 * 109.47324 * 179.97438 * 25 24 22 42 42 H 1.07997 * 120.06110 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0015 6 6 3.9207 2.9373 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7803 2.2410 -0.8367 9 6 6.0244 4.2431 -0.1394 10 1 6.5866 4.5086 -1.0225 11 6 5.8334 5.1720 0.8615 12 7 5.0695 4.8810 1.8917 13 14 6.6596 6.8439 0.7541 14 1 5.7192 7.8230 0.1523 15 1 7.0406 7.2962 2.1162 16 1 7.8759 6.7415 -0.0917 17 8 5.8951 2.2763 1.2258 18 6 7.1063 1.6631 1.2127 19 6 7.9000 1.7213 0.0737 20 6 9.1294 1.1013 0.0557 21 6 9.5796 0.4117 1.1852 22 6 10.8956 -0.2539 1.1691 23 8 11.5897 -0.2036 0.1732 24 8 11.3276 -0.9186 2.2587 25 6 12.6327 -1.5491 2.1717 26 6 8.7789 0.3536 2.3296 27 6 7.5514 0.9814 2.3414 28 9 6.7783 0.9312 3.4483 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5846 3.4693 -0.8911 35 1 3.5851 3.4698 0.8889 36 1 4.9354 5.5344 2.5960 37 1 7.5520 2.2538 -0.7991 38 1 9.7452 1.1478 -0.8302 39 1 12.6295 -2.2812 1.3641 40 1 13.3899 -0.7909 1.9717 41 1 12.8587 -2.0481 3.1140 42 1 9.1229 -0.1785 3.2041 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230314058.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -246.584307 kcal Electronic energy + Delta-G solvation = -29856.977922 eV Core-core repulsion = 25295.903720 eV Total energy + Delta-G solvation = -4561.074202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.74793 -41.65921 -41.43827 -40.50570 -38.46058 -37.52681 -37.33113 -35.15089 -32.97400 -32.22940 -31.94888 -30.99937 -28.45536 -28.23399 -25.41651 -24.49287 -24.08840 -23.04397 -22.01210 -21.47808 -19.72684 -19.25501 -18.72403 -18.31284 -17.88234 -17.50179 -17.37534 -17.26288 -17.16466 -16.92180 -16.66493 -16.47811 -15.71725 -15.25730 -15.15331 -15.07157 -14.73078 -14.39257 -14.12501 -13.96284 -13.81771 -13.66854 -13.41685 -13.20004 -12.98547 -12.90976 -12.86290 -12.78032 -12.66960 -12.49388 -12.44262 -12.23406 -11.79052 -11.67846 -11.51139 -11.48442 -11.31688 -11.14218 -10.68322 -10.00512 -9.07326 -8.20936 -6.46692 -0.31002 0.14138 1.30010 1.41733 1.45919 1.47346 1.55037 1.69195 1.82662 2.37271 2.49175 2.63740 3.12607 3.24943 3.65242 3.86984 3.93466 4.00768 4.03359 4.12470 4.14791 4.34021 4.34887 4.37832 4.42595 4.49737 4.53320 4.67926 4.75415 4.83372 4.89849 4.93080 5.03377 5.12482 5.16183 5.16898 5.31835 5.36712 5.52255 5.60532 5.70590 5.89044 6.47776 6.67465 6.81840 6.88141 7.34239 8.80371 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008898 B = 0.003994 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.033545 B = 7009.025555 C = 9132.425183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.096 4.096 7 C 0.218 3.782 8 H 0.040 0.960 9 C -0.575 4.575 10 H 0.076 0.924 11 C 0.049 3.951 12 N -0.880 5.880 13 Si 0.950 3.050 14 H -0.267 1.267 15 H -0.290 1.290 16 H -0.267 1.267 17 O -0.294 6.294 18 C 0.165 3.835 19 C -0.200 4.200 20 C -0.012 4.012 21 C -0.178 4.178 22 C 0.527 3.473 23 O -0.534 6.534 24 O -0.358 6.358 25 C 0.029 3.971 26 C -0.042 4.042 27 C 0.004 3.996 28 F -0.147 7.147 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.135 0.865 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -9.449 -1.099 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.134 4.134 7 C 0.164 3.836 8 H 0.058 0.942 9 C -0.611 4.611 10 H 0.094 0.906 11 C -0.157 4.157 12 N -0.515 5.515 13 Si 0.775 3.225 14 H -0.192 1.192 15 H -0.216 1.216 16 H -0.192 1.192 17 O -0.205 6.205 18 C 0.114 3.886 19 C -0.218 4.218 20 C -0.031 4.031 21 C -0.180 4.180 22 C 0.375 3.625 23 O -0.426 6.426 24 O -0.275 6.275 25 C -0.064 4.064 26 C -0.061 4.061 27 C -0.015 4.015 28 F -0.126 7.126 29 H 0.091 0.909 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.077 0.923 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.153 0.847 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.149 -9.674 -1.007 9.961 hybrid contribution 0.298 0.850 0.197 0.922 sum 2.447 -8.824 -0.810 9.193 Atomic orbital electron populations 1.21807 0.89959 1.04421 1.03701 1.23277 0.97442 0.79699 1.02076 1.86546 1.24299 1.33517 1.83978 1.24594 0.80395 0.93545 0.70670 1.90580 1.61047 1.44218 1.47135 1.21708 0.95573 0.88986 1.07135 1.20000 0.89888 0.92589 0.81127 0.94173 1.21615 1.37200 0.96070 1.06242 0.90627 1.25661 0.94062 1.01526 0.94436 1.70003 1.35553 1.36106 1.09788 0.85665 0.79405 0.80048 0.77351 1.19215 1.21581 1.19165 1.86252 1.29324 1.65004 1.39903 1.19837 0.87293 0.88250 0.93260 1.21260 0.95780 1.05874 0.98920 1.21190 0.93829 0.90667 0.97368 1.18637 0.94222 1.08657 0.96462 1.20783 0.85621 0.75404 0.80721 1.90796 1.57446 1.59974 1.34415 1.86548 1.38477 1.63377 1.39064 1.23615 0.79758 0.97464 1.05562 1.21218 0.89825 0.95713 0.99333 1.17160 0.93101 1.07764 0.83518 1.91433 1.74942 1.95516 1.50659 0.90934 0.87864 0.91605 0.91280 0.92390 0.85630 0.86533 0.92295 0.83112 0.82633 0.91635 0.91744 0.84731 0.81010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.37 -13.02 10.22 -51.46 -0.53 -13.55 16 4 C 0.46 19.17 7.84 71.23 0.56 19.73 16 5 O -0.54 -24.70 15.18 26.90 0.41 -24.29 16 6 C -0.10 -4.16 5.28 29.85 0.16 -4.00 16 7 C 0.22 10.18 1.34 29.85 0.04 10.22 16 8 H 0.04 1.82 6.11 -2.39 -0.01 1.80 16 9 C -0.57 -27.83 7.93 25.60 0.20 -27.63 16 10 H 0.08 3.52 7.82 -2.91 -0.02 3.50 16 11 C 0.05 2.43 5.26 84.66 0.44 2.87 16 12 N -0.88 -46.17 11.04 21.45 0.24 -45.93 16 13 Si 0.95 39.82 29.54 68.60 2.03 41.85 16 14 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 15 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 O -0.29 -14.88 8.13 -77.68 -0.63 -15.51 16 18 C 0.16 7.45 6.61 22.66 0.15 7.60 16 19 C -0.20 -7.90 8.68 22.31 0.19 -7.70 16 20 C -0.01 -0.42 9.58 22.52 0.22 -0.20 16 21 C -0.18 -5.87 5.87 -20.09 -0.12 -5.99 16 22 C 0.53 16.03 7.89 70.26 0.55 16.58 16 23 O -0.53 -17.95 16.13 19.84 0.32 -17.63 16 24 O -0.36 -8.97 9.81 -56.60 -0.56 -9.53 16 25 C 0.03 0.48 10.57 113.37 1.20 1.68 16 26 C -0.04 -1.42 9.58 22.56 0.22 -1.20 16 27 C 0.00 0.18 7.30 22.41 0.16 0.35 16 28 F -0.15 -6.53 17.10 44.97 0.77 -5.76 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.84 8.13 -2.38 -0.02 1.83 16 33 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 34 H 0.13 4.77 8.14 -2.39 -0.02 4.75 16 35 H 0.12 5.59 6.47 -2.38 -0.02 5.57 16 36 H 0.27 13.53 8.31 -92.71 -0.77 12.75 16 37 H 0.15 5.92 5.65 -2.91 -0.02 5.90 16 38 H 0.16 4.66 7.64 -2.91 -0.02 4.64 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.17 4.71 7.60 -2.91 -0.02 4.69 16 Total: -1.00 -64.08 371.53 8.27 -55.81 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 1.06 Total: 22.39 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.16 Total: 12.15 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.24 Total: -45.93 kcal Atomic # 8 Polarization: -79.53 SS G_CDS: -0.98 Total: -80.51 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.77 Total: -5.76 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -64.08 8.27 -55.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230314058.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.773 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds