Wall clock time and date at job start Sat Apr 11 2020 05:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.52996 * 109.47041 * 90.00341 * 3 2 1 5 5 H 1.09002 * 112.95341 * 285.33011 * 4 3 2 6 6 C 1.53941 * 113.75723 * 153.68970 * 4 3 2 7 7 C 1.53940 * 86.33802 * 221.95783 * 6 4 3 8 8 N 1.47957 * 113.76271 * 56.98076 * 4 3 2 9 9 C 1.46896 * 110.99994 * 251.90165 * 8 4 3 10 10 C 1.50699 * 109.47156 * 169.99763 * 9 8 4 11 11 C 1.38428 * 122.53766 * 89.99995 * 10 9 8 12 12 C 1.33391 * 114.91783 * 179.97438 * 11 10 9 13 13 S 1.75879 * 109.59536 * 359.97438 * 12 11 10 14 14 C 1.33382 * 122.54028 * 269.70787 * 10 9 8 15 15 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00410 * 179.97438 * 15 2 1 17 17 C 1.50703 * 119.99541 * 359.97438 * 15 2 1 18 18 S 1.81004 * 109.46790 * 180.02562 * 17 15 2 19 19 C 1.76197 * 99.99958 * 180.02562 * 18 17 15 20 20 H 1.08008 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00243 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99782 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00188 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47006 * 60.00006 * 23 21 19 25 25 H 1.48500 * 109.47201 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47057 * 300.00061 * 23 21 19 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 31 31 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 32 32 H 1.09001 * 113.73490 * 336.31423 * 6 4 3 33 33 H 1.08998 * 113.73515 * 107.49888 * 6 4 3 34 34 H 1.08998 * 113.76069 * 138.03458 * 7 6 4 35 35 H 1.08992 * 113.75756 * 269.29245 * 7 6 4 36 36 H 1.08999 * 109.47175 * 289.99629 * 9 8 4 37 37 H 1.09005 * 109.47433 * 49.99571 * 9 8 4 38 38 H 1.07995 * 122.53702 * 359.95750 * 11 10 9 39 39 H 1.07997 * 125.19667 * 180.02562 * 12 11 10 40 40 H 1.08001 * 125.20479 * 0.02742 * 14 10 9 41 41 H 1.08996 * 109.47057 * 299.99739 * 17 15 2 42 42 H 1.08996 * 109.47084 * 60.00703 * 17 15 2 43 43 H 0.96994 * 120.00208 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5600 2.1004 1.9318 6 6 3.6922 2.6083 1.6062 7 6 3.9989 1.7858 2.8707 8 7 3.1874 0.7122 2.2505 9 6 2.3029 0.0807 3.2387 10 6 3.0103 -1.0907 3.8700 11 6 3.7842 -0.9663 5.0110 12 6 4.3401 -2.1007 5.4394 13 16 3.8847 -3.4212 4.3707 14 6 2.9336 -2.3269 3.3749 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4723 -0.0005 18 16 2.5616 -3.8480 -0.0005 19 6 1.4415 -5.2082 -0.0013 20 1 0.3762 -5.0305 -0.0020 21 6 1.9282 -6.5081 -0.0020 22 7 3.2266 -6.7247 -0.0017 23 14 0.7408 -7.9501 -0.0036 24 1 -0.1137 -7.8863 -1.2164 25 1 1.5069 -9.2222 -0.0036 26 1 -0.1148 -7.8880 1.2086 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 3.1499 1.1384 -0.5139 31 1 1.6084 2.0284 -0.5139 32 1 4.4303 2.4860 0.8135 33 1 3.4538 3.6528 1.8073 34 1 5.0527 1.5314 2.9842 35 1 3.5608 2.1980 3.7796 36 1 2.0426 0.8062 4.0094 37 1 1.3952 -0.2662 2.7448 38 1 3.9273 -0.0224 5.5158 39 1 4.9723 -2.1940 6.3100 40 1 2.3743 -2.6120 2.4961 41 1 0.7591 -2.5302 0.8897 42 1 0.7585 -2.5298 -0.8903 43 1 3.5668 -7.6330 -0.0026 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230814649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:25 Heat of formation + Delta-G solvation = 24.410704 kcal Electronic energy + Delta-G solvation = -25915.595396 eV Core-core repulsion = 22407.531218 eV Total energy + Delta-G solvation = -3508.064178 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38342 -40.03383 -38.60796 -36.27013 -34.57057 -32.52624 -31.44435 -29.76669 -28.96639 -27.65609 -27.14356 -25.96998 -24.29513 -23.30591 -20.71358 -20.31825 -19.57617 -19.40937 -18.48894 -17.84640 -17.12615 -16.91796 -16.87341 -16.79604 -16.27410 -15.84058 -15.63757 -14.87139 -14.55693 -14.40784 -14.11443 -14.04439 -13.86019 -13.67083 -13.51050 -13.28745 -13.17979 -13.12151 -13.06646 -12.89051 -12.70283 -12.52801 -12.36645 -12.08851 -11.79737 -11.71616 -11.59970 -11.41296 -11.12455 -10.61396 -10.20856 -9.72615 -9.59184 -9.32044 -9.20615 -8.60773 -8.32974 -6.09069 0.23780 0.88768 1.26783 1.28302 1.40574 1.45264 1.56073 1.84647 1.85504 2.23187 2.30398 3.00633 3.15986 3.33496 3.67280 3.84849 3.89480 4.04612 4.12764 4.19696 4.30026 4.31564 4.37301 4.40482 4.47165 4.53038 4.54834 4.61502 4.74046 4.74896 4.85952 4.89723 4.94527 5.02877 5.03599 5.18608 5.33955 5.41477 5.47456 5.65994 5.68632 5.82238 6.19810 6.27344 6.48926 7.08282 7.43133 8.75189 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.004675 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.932283 B = 5988.214138 C = 7817.937773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.612 5.612 3 C 0.135 3.865 4 C 0.016 3.984 5 H 0.100 0.900 6 C -0.121 4.121 7 C 0.002 3.998 8 N -0.481 5.481 9 C 0.094 3.906 10 C -0.104 4.104 11 C -0.127 4.127 12 C -0.217 4.217 13 S 0.052 5.948 14 C -0.196 4.196 15 C 0.534 3.466 16 O -0.534 6.534 17 C -0.129 4.129 18 S -0.127 6.127 19 C -0.549 4.549 20 H 0.076 0.924 21 C 0.020 3.980 22 N -0.907 5.907 23 Si 0.989 3.011 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.264 1.264 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.162 0.838 39 H 0.188 0.812 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.164 21.721 8.337 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.347 5.347 3 C 0.012 3.988 4 C -0.095 4.095 5 H 0.118 0.882 6 C -0.159 4.159 7 C -0.126 4.126 8 N -0.204 5.204 9 C -0.037 4.037 10 C -0.116 4.116 11 C -0.158 4.158 12 C -0.352 4.352 13 S 0.316 5.684 14 C -0.333 4.333 15 C 0.320 3.680 16 O -0.409 6.409 17 C -0.281 4.281 18 S 0.101 5.899 19 C -0.697 4.697 20 H 0.094 0.906 21 C -0.185 4.185 22 N -0.544 5.544 23 Si 0.811 3.189 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.180 0.820 39 H 0.205 0.795 40 H 0.160 0.840 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.610 19.467 7.972 21.344 hybrid contribution -2.454 0.323 0.200 2.483 sum -6.063 19.790 8.172 22.253 Atomic orbital electron populations 1.22006 0.77850 1.04134 1.02926 1.47688 1.07703 1.04918 1.74371 1.21522 0.97323 0.84339 0.95591 1.23975 0.97561 0.92349 0.95565 0.88206 1.23216 0.96256 0.98964 0.97512 1.23978 0.99718 0.91555 0.97372 1.68738 1.15852 1.20219 1.15618 1.21183 0.94471 0.93560 0.94462 1.18989 1.01718 0.94135 0.96805 1.20197 0.99087 0.99685 0.96837 1.25868 1.08474 0.95492 1.05409 1.84773 1.47464 1.14265 1.21920 1.25640 1.06461 0.96922 1.04235 1.19750 0.87343 0.84865 0.75999 1.90707 1.14996 1.86920 1.48304 1.23437 1.02932 0.96701 1.04985 1.85585 1.11505 0.96208 1.96621 1.23155 0.94572 0.93119 1.58886 0.90610 1.25993 0.97360 1.01358 0.93827 1.70169 1.13918 1.22354 1.47921 0.85150 0.77928 0.76446 0.79417 1.18692 1.20320 1.18874 0.91498 0.88095 0.91905 0.92262 0.86760 0.90394 0.88046 0.91254 0.89422 0.91077 0.91888 0.82038 0.79473 0.83988 0.89084 0.88697 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.24 127.77 1.31 2.60 16 2 N -0.61 -15.94 2.83 -846.74 -2.40 -18.34 16 3 C 0.14 2.85 5.59 86.38 0.48 3.33 16 4 C 0.02 0.29 3.55 45.02 0.16 0.45 16 5 H 0.10 1.33 7.92 -2.39 -0.02 1.31 16 6 C -0.12 -1.90 7.84 31.24 0.25 -1.66 16 7 C 0.00 0.04 7.96 86.36 0.69 0.73 16 8 N -0.48 -12.42 4.86 -885.16 -4.30 -16.72 16 9 C 0.09 2.40 5.05 85.56 0.43 2.83 16 10 C -0.10 -3.28 5.36 -20.92 -0.11 -3.40 16 11 C -0.13 -3.41 9.98 21.22 0.21 -3.20 16 12 C -0.22 -6.08 11.23 66.72 0.75 -5.33 16 13 S 0.05 1.95 23.34 -56.49 -1.32 0.63 16 14 C -0.20 -7.73 10.98 66.72 0.73 -7.00 16 15 C 0.53 20.29 7.20 87.66 0.63 20.93 16 16 O -0.53 -25.08 14.88 -3.02 -0.05 -25.12 16 17 C -0.13 -5.38 3.98 71.24 0.28 -5.09 16 18 S -0.13 -7.10 19.75 -56.49 -1.12 -8.22 16 19 C -0.55 -31.87 9.50 67.95 0.65 -31.22 16 20 H 0.08 4.13 7.80 -2.91 -0.02 4.11 16 21 C 0.02 1.15 5.49 84.86 0.47 1.61 16 22 N -0.91 -56.48 13.22 21.65 0.29 -56.20 16 23 Si 0.99 44.54 29.55 68.60 2.03 46.57 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.08 8.07 -2.39 -0.02 1.06 16 29 H 0.06 1.24 6.44 -2.38 -0.02 1.22 16 30 H 0.06 1.64 7.15 -2.39 -0.02 1.62 16 31 H 0.11 1.49 8.07 -2.38 -0.02 1.47 16 32 H 0.08 1.48 7.92 -2.39 -0.02 1.46 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 1.25 7.48 -2.39 -0.02 1.24 16 36 H 0.07 1.38 7.37 -2.39 -0.02 1.36 16 37 H 0.06 1.71 8.06 -2.38 -0.02 1.69 16 38 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 39 H 0.19 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.14 6.45 6.08 -2.91 -0.02 6.43 16 41 H 0.09 3.56 7.11 -2.40 -0.02 3.55 16 42 H 0.09 3.70 8.11 -2.40 -0.02 3.68 16 43 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -79.86 380.17 1.06 -78.80 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 1.00 Total: 23.02 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 6.92 Total: -24.41 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -6.42 Total: -91.26 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -5.15 SS G_CDS: -2.43 Total: -7.59 kcal Total: -79.86 1.06 -78.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230814649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.213 kcal (2) G-P(sol) polarization free energy of solvation -79.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds