Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47140 * 2 1 4 4 C 1.34228 * 117.00315 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00555 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47248 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47099 * 55.00205 * 7 6 4 9 9 C 1.50703 * 109.46792 * 174.99926 * 7 6 4 10 10 H 1.08003 * 120.00040 * 239.99863 * 9 7 6 11 11 C 1.37873 * 120.00079 * 59.99959 * 9 7 6 12 12 N 1.31519 * 120.00033 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00096 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46750 * 90.00379 * 13 11 9 15 15 H 1.48493 * 109.47455 * 210.00153 * 13 11 9 16 16 H 1.48496 * 109.47369 * 330.00812 * 13 11 9 17 17 O 1.42899 * 109.47115 * 294.99660 * 7 6 4 18 18 C 1.35963 * 116.99645 * 155.95337 * 17 7 6 19 19 C 1.38306 * 119.99109 * 5.49783 * 18 17 7 20 20 C 1.39666 * 119.81544 * 179.97438 * 19 18 17 21 21 C 1.47605 * 120.10191 * 180.02562 * 20 19 18 22 22 O 1.21486 * 120.00162 * 359.97060 * 21 20 19 23 23 O 1.34731 * 119.99870 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99721 * 179.97438 * 23 21 20 25 25 C 1.39704 * 119.79265 * 359.97438 * 20 19 18 26 26 C 1.37863 * 119.97753 * 359.97438 * 25 20 19 27 27 C 1.38537 * 120.18845 * 0.28121 * 26 25 20 28 28 F 1.35102 * 119.90024 * 179.72722 * 27 26 25 29 29 H 1.09003 * 109.47548 * 300.00218 * 1 2 3 30 30 H 1.09001 * 109.47232 * 60.00301 * 1 2 3 31 31 H 1.09008 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47246 * 239.99797 * 2 1 3 33 33 H 1.09001 * 109.47232 * 119.99699 * 2 1 3 34 34 H 1.08997 * 109.46861 * 59.99329 * 6 4 3 35 35 H 1.09005 * 109.46650 * 300.00371 * 6 4 3 36 36 H 0.97001 * 119.99782 * 179.97438 * 12 11 9 37 37 H 1.07993 * 120.09188 * 359.97438 * 19 18 17 38 38 H 1.09004 * 109.46878 * 179.97438 * 24 23 21 39 39 H 1.08999 * 109.47522 * 299.99538 * 24 23 21 40 40 H 1.09000 * 109.47465 * 60.00185 * 24 23 21 41 41 H 1.07998 * 120.00650 * 180.02562 * 25 20 19 42 42 H 1.08005 * 119.90512 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4486 2.8573 -0.0010 8 1 5.7806 2.2493 -0.8425 9 6 6.0243 4.2445 -0.1255 10 1 6.6591 4.4925 -0.9633 11 6 5.7406 5.1969 0.8301 12 7 4.9679 4.8948 1.8506 13 14 6.4547 6.9162 0.6762 14 1 5.5205 7.7727 -0.0976 15 1 6.6499 7.4942 2.0300 16 1 7.7613 6.8484 -0.0262 17 8 5.8944 2.2644 1.2203 18 6 7.1133 1.6623 1.2052 19 6 7.9096 1.7415 0.0771 20 6 9.1613 1.1220 0.0658 21 6 10.0166 1.2030 -1.1345 22 8 9.6318 1.8087 -2.1148 23 8 11.2239 0.6051 -1.1430 24 6 12.0105 0.7255 -2.3574 25 6 9.6019 0.4265 1.1945 26 6 8.8016 0.3539 2.3147 27 6 7.5579 0.9642 2.3231 28 9 6.7761 0.8846 3.4221 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5850 3.4698 0.8887 35 1 3.5844 3.4693 -0.8912 36 1 4.7686 5.5648 2.5232 37 1 7.5644 2.2808 -0.7925 38 1 12.9575 0.2008 -2.2305 39 1 11.4613 0.2880 -3.1911 40 1 12.2038 1.7785 -2.5623 41 1 10.5693 -0.0534 1.1896 42 1 9.1435 -0.1838 3.1868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230892918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -230.065921 kcal Electronic energy + Delta-G solvation = -30199.149640 eV Core-core repulsion = 25638.791729 eV Total energy + Delta-G solvation = -4560.357911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.20171 -40.32502 -39.84565 -38.85880 -36.87957 -36.18510 -35.84720 -33.33236 -31.61255 -30.79194 -30.43630 -29.24512 -27.51390 -26.42025 -23.76361 -23.37009 -22.67583 -21.38698 -20.70928 -19.82766 -18.32851 -17.27268 -17.16687 -16.68593 -16.50830 -16.21472 -16.18569 -15.85325 -15.56587 -15.37022 -15.02244 -14.67320 -14.01083 -13.76356 -13.68536 -13.49809 -13.40535 -13.23991 -12.80081 -12.58794 -12.52710 -12.22101 -12.03166 -11.83289 -11.77261 -11.41037 -11.33144 -11.19087 -11.06711 -10.99678 -10.73220 -10.71285 -10.48095 -10.32221 -10.15483 -9.76919 -9.52940 -9.32208 -8.80486 -8.52763 -7.36097 -6.29561 -4.51036 0.97722 1.81704 2.81537 2.82364 2.98180 3.16152 3.25630 3.27957 3.31848 4.12445 4.17575 4.23181 4.76313 4.93248 5.06206 5.08256 5.10539 5.14628 5.18315 5.20371 5.37095 5.45506 5.46814 5.49251 5.63449 5.88715 5.89767 5.97938 6.06351 6.17039 6.28158 6.34219 6.40189 6.46485 6.56554 6.70511 6.74601 6.95912 7.17818 7.24304 7.61493 7.78546 7.94603 8.36059 8.48464 8.70846 9.27194 10.71637 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.004429 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.323012 B = 6319.942126 C = 7710.984201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.457 3.543 5 O -0.516 6.516 6 C -0.100 4.100 7 C 0.220 3.780 8 H 0.036 0.964 9 C -0.564 4.564 10 H 0.072 0.928 11 C 0.086 3.914 12 N -0.855 5.855 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.275 6.275 18 C 0.146 3.854 19 C -0.114 4.114 20 C -0.108 4.108 21 C 0.512 3.488 22 O -0.502 6.502 23 O -0.357 6.357 24 C 0.037 3.963 25 C -0.101 4.101 26 C -0.136 4.136 27 C 0.079 3.921 28 F -0.131 7.131 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.269 0.731 37 H 0.157 0.843 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.138 0.862 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -8.669 -2.666 9.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.138 4.138 7 C 0.167 3.833 8 H 0.054 0.946 9 C -0.601 4.601 10 H 0.090 0.910 11 C -0.122 4.122 12 N -0.490 5.490 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.194 1.194 17 O -0.186 6.186 18 C 0.096 3.904 19 C -0.133 4.133 20 C -0.109 4.109 21 C 0.357 3.643 22 O -0.390 6.390 23 O -0.274 6.274 24 C -0.057 4.057 25 C -0.120 4.120 26 C -0.155 4.155 27 C 0.058 3.942 28 F -0.110 7.110 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.124 0.876 36 H 0.079 0.921 37 H 0.175 0.825 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.156 0.844 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.969 -8.705 -2.624 9.564 hybrid contribution 0.354 0.876 -0.131 0.954 sum 3.323 -7.829 -2.756 8.940 Atomic orbital electron populations 1.21779 0.93270 1.02342 1.03335 1.22863 0.94871 0.81721 1.02077 1.86568 1.26035 1.31050 1.84693 1.24863 0.79570 0.94251 0.71182 1.90595 1.60233 1.43638 1.45868 1.21813 0.96171 0.88312 1.07475 1.19934 0.89100 0.92770 0.81537 0.94592 1.21437 1.33203 0.94716 1.10722 0.90970 1.25056 0.93675 0.99144 0.94292 1.69863 1.33928 1.34558 1.10632 0.86507 0.79967 0.83432 0.77782 1.20090 1.20824 1.19433 1.86356 1.27191 1.65564 1.39533 1.18820 0.88454 0.91320 0.91840 1.21397 0.92478 0.99985 0.99465 1.18810 0.94782 1.04692 0.92662 1.21237 0.79872 0.75484 0.87691 1.90842 1.72935 1.39788 1.35449 1.86546 1.29526 1.70282 1.41049 1.23228 0.94484 1.02778 0.85225 1.20871 1.00000 0.99578 0.91559 1.20752 0.92583 1.02211 0.99957 1.17393 0.90829 1.02468 0.83466 1.91476 1.73992 1.94605 1.50925 0.91581 0.91707 0.90823 0.91861 0.91688 0.84069 0.87637 0.92067 0.82506 0.88256 0.91968 0.91915 0.84437 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.25 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.74 10.22 -39.25 -0.40 -7.14 16 4 C 0.46 9.68 7.84 36.00 0.28 9.96 16 5 O -0.52 -11.96 15.17 -24.06 -0.36 -12.33 16 6 C -0.10 -2.22 5.22 -27.89 -0.15 -2.36 16 7 C 0.22 5.32 1.35 -27.88 -0.04 5.28 16 8 H 0.04 0.86 6.18 -51.93 -0.32 0.54 16 9 C -0.56 -14.29 7.91 -34.44 -0.27 -14.57 16 10 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 11 C 0.09 2.20 5.24 -17.82 -0.09 2.10 16 12 N -0.86 -22.40 10.93 55.43 0.61 -21.80 16 13 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 O -0.28 -6.97 8.29 -34.05 -0.28 -7.26 16 18 C 0.15 3.33 6.59 -39.24 -0.26 3.07 16 19 C -0.11 -2.43 8.23 -39.02 -0.32 -2.76 16 20 C -0.11 -1.98 5.87 -104.99 -0.62 -2.59 16 21 C 0.51 8.97 7.89 34.55 0.27 9.25 16 22 O -0.50 -10.04 16.13 -19.26 -0.31 -10.35 16 23 O -0.36 -5.05 9.81 -40.58 -0.40 -5.45 16 24 C 0.04 0.38 10.56 101.05 1.07 1.45 16 25 C -0.10 -1.58 9.61 -39.17 -0.38 -1.95 16 26 C -0.14 -2.20 10.00 -39.61 -0.40 -2.60 16 27 C 0.08 1.61 7.32 -39.15 -0.29 1.32 16 28 F -0.13 -2.82 17.10 2.25 0.04 -2.79 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.14 3.39 6.22 -51.93 -0.32 3.06 16 35 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 37 H 0.16 3.56 5.25 -52.49 -0.28 3.28 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.14 1.70 7.60 -52.49 -0.40 1.30 16 42 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -30.57 371.30 -6.20 -36.77 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.09 Total: 4.31 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -0.57 Total: 5.46 kcal Atomic # 7 Polarization: -22.40 SS G_CDS: 0.61 Total: -21.80 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.76 Total: -42.53 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.57 -6.20 -36.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230892918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.299 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds