Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.47140 * 2 1 4 4 C 1.34228 * 117.00315 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99986 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00555 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47248 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47099 * 55.00205 * 7 6 4 9 9 C 1.50703 * 109.46792 * 174.99926 * 7 6 4 10 10 H 1.08003 * 120.00040 * 239.99863 * 9 7 6 11 11 C 1.37873 * 120.00079 * 59.99959 * 9 7 6 12 12 N 1.31519 * 120.00033 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00096 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46750 * 90.00379 * 13 11 9 15 15 H 1.48493 * 109.47455 * 210.00153 * 13 11 9 16 16 H 1.48496 * 109.47369 * 330.00812 * 13 11 9 17 17 O 1.42899 * 109.47115 * 294.99660 * 7 6 4 18 18 C 1.35963 * 116.99645 * 155.95337 * 17 7 6 19 19 C 1.38306 * 119.99109 * 5.49783 * 18 17 7 20 20 C 1.39666 * 119.81544 * 179.97438 * 19 18 17 21 21 C 1.47605 * 120.10191 * 180.02562 * 20 19 18 22 22 O 1.21486 * 120.00162 * 359.97060 * 21 20 19 23 23 O 1.34731 * 119.99870 * 179.97438 * 21 20 19 24 24 C 1.45197 * 116.99721 * 179.97438 * 23 21 20 25 25 C 1.39704 * 119.79265 * 359.97438 * 20 19 18 26 26 C 1.37863 * 119.97753 * 359.97438 * 25 20 19 27 27 C 1.38537 * 120.18845 * 0.28121 * 26 25 20 28 28 F 1.35102 * 119.90024 * 179.72722 * 27 26 25 29 29 H 1.09003 * 109.47548 * 300.00218 * 1 2 3 30 30 H 1.09001 * 109.47232 * 60.00301 * 1 2 3 31 31 H 1.09008 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47246 * 239.99797 * 2 1 3 33 33 H 1.09001 * 109.47232 * 119.99699 * 2 1 3 34 34 H 1.08997 * 109.46861 * 59.99329 * 6 4 3 35 35 H 1.09005 * 109.46650 * 300.00371 * 6 4 3 36 36 H 0.97001 * 119.99782 * 179.97438 * 12 11 9 37 37 H 1.07993 * 120.09188 * 359.97438 * 19 18 17 38 38 H 1.09004 * 109.46878 * 179.97438 * 24 23 21 39 39 H 1.08999 * 109.47522 * 299.99538 * 24 23 21 40 40 H 1.09000 * 109.47465 * 60.00185 * 24 23 21 41 41 H 1.07998 * 120.00650 * 180.02562 * 25 20 19 42 42 H 1.08005 * 119.90512 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 -0.0012 7 6 5.4486 2.8573 -0.0010 8 1 5.7806 2.2493 -0.8425 9 6 6.0243 4.2445 -0.1255 10 1 6.6591 4.4925 -0.9633 11 6 5.7406 5.1969 0.8301 12 7 4.9679 4.8948 1.8506 13 14 6.4547 6.9162 0.6762 14 1 5.5205 7.7727 -0.0976 15 1 6.6499 7.4942 2.0300 16 1 7.7613 6.8484 -0.0262 17 8 5.8944 2.2644 1.2203 18 6 7.1133 1.6623 1.2052 19 6 7.9096 1.7415 0.0771 20 6 9.1613 1.1220 0.0658 21 6 10.0166 1.2030 -1.1345 22 8 9.6318 1.8087 -2.1148 23 8 11.2239 0.6051 -1.1430 24 6 12.0105 0.7255 -2.3574 25 6 9.6019 0.4265 1.1945 26 6 8.8016 0.3539 2.3147 27 6 7.5579 0.9642 2.3231 28 9 6.7761 0.8846 3.4221 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.5850 3.4698 0.8887 35 1 3.5844 3.4693 -0.8912 36 1 4.7686 5.5648 2.5232 37 1 7.5644 2.2808 -0.7925 38 1 12.9575 0.2008 -2.2305 39 1 11.4613 0.2880 -3.1911 40 1 12.2038 1.7785 -2.5623 41 1 10.5693 -0.0534 1.1896 42 1 9.1435 -0.1838 3.1868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230892918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -246.250258 kcal Electronic energy + Delta-G solvation = -30199.851446 eV Core-core repulsion = 25638.791729 eV Total energy + Delta-G solvation = -4561.059716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.82153 -41.72144 -41.44897 -40.41901 -38.43051 -37.52035 -37.42843 -35.20626 -32.97067 -32.30285 -31.95472 -30.78805 -28.59441 -28.20820 -25.30436 -24.80596 -24.00649 -22.93229 -22.10634 -21.48848 -19.90698 -18.95122 -18.62881 -18.23088 -18.08202 -17.72108 -17.43150 -17.38061 -17.16925 -17.00012 -16.64184 -16.43961 -15.44496 -15.25032 -15.14138 -14.94632 -14.91218 -14.45249 -14.14904 -13.98241 -13.95322 -13.67360 -13.34419 -13.32673 -13.01274 -12.96737 -12.85914 -12.82854 -12.66731 -12.48388 -12.36175 -12.19094 -11.82120 -11.74323 -11.54185 -11.50603 -11.36079 -11.12561 -10.73487 -10.00480 -9.01130 -8.22760 -6.50558 -0.50840 0.36919 1.27526 1.38375 1.39044 1.41854 1.51079 1.60439 1.80154 2.34835 2.53742 2.64804 3.11757 3.27290 3.66434 3.79647 3.91731 3.99123 4.10607 4.11329 4.12934 4.33125 4.34223 4.35713 4.41206 4.48443 4.54857 4.69076 4.79296 4.85894 4.91454 4.94612 5.05914 5.07692 5.12458 5.18600 5.24993 5.34787 5.48888 5.62883 5.72767 5.88130 6.46818 6.63198 6.81688 6.87615 7.30320 8.77732 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008208 B = 0.004429 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3410.323012 B = 6319.942126 C = 7710.984201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.540 6.540 6 C -0.097 4.097 7 C 0.224 3.776 8 H 0.023 0.977 9 C -0.575 4.575 10 H 0.061 0.939 11 C 0.050 3.950 12 N -0.878 5.878 13 Si 0.953 3.047 14 H -0.263 1.263 15 H -0.281 1.281 16 H -0.276 1.276 17 O -0.303 6.303 18 C 0.105 3.895 19 C -0.132 4.132 20 C -0.115 4.115 21 C 0.517 3.483 22 O -0.536 6.536 23 O -0.346 6.346 24 C 0.027 3.973 25 C -0.073 4.073 26 C -0.114 4.114 27 C 0.058 3.942 28 F -0.143 7.143 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.270 0.730 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.186 0.814 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -10.076 -2.305 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.430 6.430 6 C -0.134 4.134 7 C 0.170 3.830 8 H 0.041 0.959 9 C -0.612 4.612 10 H 0.079 0.921 11 C -0.156 4.156 12 N -0.513 5.513 13 Si 0.777 3.223 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.201 1.201 17 O -0.216 6.216 18 C 0.056 3.944 19 C -0.151 4.151 20 C -0.116 4.116 21 C 0.363 3.637 22 O -0.427 6.427 23 O -0.262 6.262 24 C -0.065 4.065 25 C -0.091 4.091 26 C -0.132 4.132 27 C 0.038 3.962 28 F -0.122 7.122 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.148 0.852 38 H 0.161 0.839 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.203 0.797 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 4.677 -10.127 -2.265 11.382 hybrid contribution -0.047 1.142 -0.285 1.178 sum 4.630 -8.985 -2.551 10.424 Atomic orbital electron populations 1.21809 0.89822 1.04477 1.03715 1.23291 0.97524 0.79652 1.02072 1.86542 1.24123 1.33594 1.83993 1.24528 0.80440 0.93448 0.70699 1.90574 1.61083 1.44192 1.47126 1.21654 0.95316 0.89172 1.07272 1.19818 0.90046 0.91927 0.81219 0.95873 1.21534 1.33327 0.95732 1.10617 0.92089 1.25652 0.93941 1.02054 0.93937 1.69973 1.34823 1.35414 1.11126 0.85645 0.79095 0.79854 0.77666 1.18755 1.20632 1.20101 1.86269 1.28841 1.66819 1.39632 1.19234 0.88306 0.93252 0.93583 1.21195 0.94136 1.01377 0.98416 1.19013 0.93826 1.04485 0.94295 1.21115 0.80710 0.75067 0.86802 1.90831 1.73909 1.41406 1.36577 1.86518 1.27893 1.69027 1.42758 1.23648 0.95486 1.03469 0.83929 1.21387 1.01095 0.97016 0.89560 1.21260 0.90175 1.00219 1.01542 1.17866 0.92368 1.03347 0.82608 1.91438 1.74708 1.94792 1.51259 0.91518 0.90996 0.87749 0.91430 0.92258 0.85811 0.86150 0.92047 0.85194 0.83875 0.91976 0.92168 0.79728 0.79665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.29 71.98 0.74 -2.09 16 2 C 0.05 1.41 6.19 71.98 0.45 1.85 16 3 O -0.37 -13.70 10.22 -51.40 -0.53 -14.23 16 4 C 0.46 20.49 7.84 71.24 0.56 21.05 16 5 O -0.54 -26.21 15.17 27.01 0.41 -25.80 16 6 C -0.10 -4.51 5.22 29.85 0.16 -4.35 16 7 C 0.22 11.51 1.35 29.85 0.04 11.55 16 8 H 0.02 1.21 6.18 -2.39 -0.01 1.20 16 9 C -0.58 -30.72 7.91 25.60 0.20 -30.51 16 10 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 11 C 0.05 2.61 5.24 84.65 0.44 3.05 16 12 N -0.88 -47.62 10.93 21.45 0.23 -47.39 16 13 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 17 O -0.30 -16.26 8.29 -79.34 -0.66 -16.92 16 18 C 0.11 5.00 6.59 22.49 0.15 5.15 16 19 C -0.13 -5.88 8.23 22.63 0.19 -5.69 16 20 C -0.11 -4.12 5.87 -20.11 -0.12 -4.23 16 21 C 0.52 17.65 7.89 70.29 0.55 18.20 16 22 O -0.54 -21.83 16.13 19.88 0.32 -21.51 16 23 O -0.35 -8.77 9.81 -56.41 -0.55 -9.32 16 24 C 0.03 0.50 10.56 113.37 1.20 1.69 16 25 C -0.07 -2.00 9.61 22.54 0.22 -1.78 16 26 C -0.11 -3.32 10.00 22.25 0.22 -3.10 16 27 C 0.06 2.38 7.32 22.55 0.16 2.54 16 28 F -0.14 -6.23 17.10 44.97 0.77 -5.46 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 1.48 8.14 -2.38 -0.02 1.47 16 32 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 33 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 34 H 0.12 6.27 6.22 -2.39 -0.01 6.25 16 35 H 0.12 5.06 8.14 -2.38 -0.02 5.04 16 36 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 37 H 0.13 6.40 5.25 -2.91 -0.02 6.39 16 38 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 41 H 0.19 3.42 7.60 -2.91 -0.02 3.40 16 42 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -71.19 371.30 8.25 -62.94 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 1.06 Total: 20.38 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.16 Total: 13.33 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.23 Total: -47.39 kcal Atomic # 8 Polarization: -86.77 SS G_CDS: -1.01 Total: -87.78 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.77 Total: -5.46 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -71.19 8.25 -62.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230892918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.311 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds