Wall clock time and date at job start Sat Apr 11 2020 05:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.46970 * 2 1 4 4 C 1.34222 * 117.00015 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00326 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00138 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47434 * 180.02562 * 6 4 3 8 8 H 1.08994 * 109.47361 * 56.51007 * 7 6 4 9 9 C 1.50704 * 109.47618 * 176.51099 * 7 6 4 10 10 H 1.08003 * 119.99408 * 54.73394 * 9 7 6 11 11 C 1.37873 * 120.00118 * 234.74402 * 9 7 6 12 12 N 1.31513 * 119.99826 * 5.02612 * 11 9 7 13 13 Si 1.86801 * 119.99882 * 185.02661 * 11 9 7 14 14 H 1.48502 * 109.46995 * 274.97106 * 13 11 9 15 15 H 1.48497 * 109.47113 * 34.97446 * 13 11 9 16 16 H 1.48498 * 109.46827 * 154.97507 * 13 11 9 17 17 O 1.42902 * 109.46868 * 296.50959 * 7 6 4 18 18 C 1.35691 * 116.99917 * 159.05231 * 17 7 6 19 19 C 1.38925 * 120.16257 * 277.66631 * 18 17 7 20 20 F 1.35099 * 119.97300 * 359.97438 * 19 18 17 21 21 C 1.38204 * 120.04833 * 179.72442 * 19 18 17 22 22 C 1.38568 * 120.37962 * 0.55084 * 21 19 18 23 23 C 1.37740 * 120.32690 * 359.73016 * 22 21 19 24 24 C 1.39810 * 119.94279 * 359.97438 * 23 22 21 25 25 C 1.47405 * 120.18372 * 180.02562 * 24 23 22 26 26 O 1.21515 * 119.99661 * 185.54331 * 25 24 23 27 27 O 1.34746 * 120.00075 * 5.54212 * 25 24 23 28 28 C 1.45204 * 116.99720 * 185.11773 * 27 25 24 29 29 H 1.08998 * 109.46764 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47293 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.47015 * 59.99997 * 1 2 3 32 32 H 1.09002 * 109.47458 * 240.00560 * 2 1 3 33 33 H 1.08999 * 109.47015 * 120.00003 * 2 1 3 34 34 H 1.09002 * 109.47054 * 60.00236 * 6 4 3 35 35 H 1.09005 * 109.47054 * 300.00016 * 6 4 3 36 36 H 0.97001 * 120.00062 * 354.81053 * 12 11 9 37 37 H 1.08006 * 119.80636 * 180.28083 * 21 19 18 38 38 H 1.07999 * 119.83827 * 179.74739 * 22 21 19 39 39 H 1.08003 * 120.02672 * 179.97438 * 23 22 21 40 40 H 1.09001 * 109.47318 * 64.95703 * 28 27 25 41 41 H 1.09003 * 109.46955 * 184.95178 * 28 27 25 42 42 H 1.08992 * 109.47509 * 304.95355 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4485 2.8575 0.0010 8 1 5.7817 2.2726 -0.8562 9 6 6.0244 4.2475 -0.0848 10 1 5.7342 4.9976 0.6359 11 6 6.9216 4.5615 -1.0835 12 7 7.1997 3.6797 -2.0187 13 14 7.7423 6.2394 -1.1080 14 1 6.8563 7.2138 -1.7942 15 1 7.9888 6.6903 0.2852 16 1 9.0341 6.1480 -1.8347 17 8 5.8928 2.2315 1.2064 18 6 7.1359 1.6877 1.1961 19 6 7.3383 0.4184 0.6688 20 9 6.2955 -0.2773 0.1651 21 6 8.6064 -0.1308 0.6543 22 6 9.6809 0.5729 1.1743 23 6 9.4970 1.8301 1.7062 24 6 8.2210 2.4012 1.7222 25 6 8.0183 3.7465 2.2896 26 8 6.8953 4.1989 2.3942 27 8 9.0781 4.4746 2.6924 28 6 8.7981 5.7409 3.3454 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5844 3.4693 0.8912 35 1 3.5850 3.4699 -0.8888 36 1 6.8325 2.7835 -1.9649 37 1 8.7600 -1.1161 0.2392 38 1 10.6674 0.1336 1.1622 39 1 10.3378 2.3741 2.1106 40 1 8.2828 5.5574 4.2882 41 1 9.7342 6.2647 3.5390 42 1 8.1672 6.3512 2.6994 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233684088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:36 Heat of formation + Delta-G solvation = -221.904014 kcal Electronic energy + Delta-G solvation = -31604.453524 eV Core-core repulsion = 27044.449540 eV Total energy + Delta-G solvation = -4560.003984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.01732 -40.00164 -39.74823 -38.38275 -36.89803 -35.89509 -35.43204 -33.35811 -31.72596 -30.93258 -30.55410 -28.86894 -27.23178 -25.63775 -23.65886 -23.35184 -22.34000 -21.53616 -20.48915 -20.03178 -17.94317 -17.50213 -17.04467 -16.60148 -16.38318 -16.03885 -15.78938 -15.64482 -15.39545 -15.24528 -14.86749 -14.60945 -13.90329 -13.83556 -13.63750 -13.49382 -13.15943 -12.86348 -12.75315 -12.60380 -12.29014 -12.18755 -11.86697 -11.77603 -11.57879 -11.48060 -11.33070 -11.23569 -11.05347 -10.91595 -10.31448 -10.18590 -10.16027 -9.95345 -9.80484 -9.67023 -9.46349 -8.74209 -8.46186 -8.22818 -7.90572 -6.57398 -4.31303 1.15782 1.63005 2.92973 3.18580 3.22566 3.25910 3.30766 3.35190 3.51151 4.04072 4.34762 4.66338 4.91526 5.03912 5.08739 5.14446 5.20801 5.23027 5.30661 5.41905 5.48675 5.54279 5.56557 5.65255 5.78957 5.84288 5.86240 5.94891 6.00792 6.11487 6.16808 6.35163 6.44786 6.56552 6.62868 6.71066 6.84517 7.00470 7.04955 7.21104 7.81437 8.27347 8.44699 8.57207 8.62451 8.69894 9.39948 10.75581 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.010964 B = 0.005125 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.140736 B = 5461.838448 C = 6479.466540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.369 6.369 4 C 0.448 3.552 5 O -0.487 6.487 6 C -0.089 4.089 7 C 0.208 3.792 8 H 0.045 0.955 9 C -0.589 4.589 10 H 0.072 0.928 11 C 0.028 3.972 12 N -0.892 5.892 13 Si 1.061 2.939 14 H -0.283 1.283 15 H -0.284 1.284 16 H -0.281 1.281 17 O -0.331 6.331 18 C 0.178 3.822 19 C 0.053 3.947 20 F -0.114 7.114 21 C -0.120 4.120 22 C -0.134 4.134 23 C -0.071 4.071 24 C -0.115 4.115 25 C 0.500 3.500 26 O -0.443 6.443 27 O -0.369 6.369 28 C 0.039 3.961 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.270 0.730 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.137 0.863 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 -3.828 6.400 7.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.288 6.288 4 C 0.291 3.709 5 O -0.373 6.373 6 C -0.126 4.126 7 C 0.156 3.844 8 H 0.063 0.937 9 C -0.626 4.626 10 H 0.090 0.910 11 C -0.179 4.179 12 N -0.529 5.529 13 Si 0.889 3.111 14 H -0.209 1.209 15 H -0.210 1.210 16 H -0.206 1.206 17 O -0.248 6.248 18 C 0.130 3.870 19 C 0.033 3.967 20 F -0.092 7.092 21 C -0.140 4.140 22 C -0.152 4.152 23 C -0.090 4.090 24 C -0.117 4.117 25 C 0.342 3.658 26 O -0.326 6.326 27 O -0.287 6.287 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.278 -3.025 5.657 6.421 hybrid contribution -1.161 -1.119 0.587 1.716 sum -0.883 -4.143 6.244 7.545 Atomic orbital electron populations 1.21779 0.93283 1.02392 1.03253 1.22857 0.94781 0.81562 1.02169 1.86542 1.26036 1.31253 1.84947 1.24599 0.79749 0.94158 0.72444 1.90717 1.59738 1.42923 1.43894 1.21701 0.96672 0.89002 1.05246 1.20156 0.87979 0.93512 0.82794 0.93678 1.22380 1.27979 0.96072 1.16127 0.91001 1.25968 0.94700 1.05259 0.91970 1.70848 1.44473 1.05809 1.31761 0.83663 0.76958 0.74361 0.76150 1.20937 1.20955 1.20592 1.85994 1.25299 1.73235 1.40321 1.18506 0.86727 0.88901 0.92848 1.18119 0.85210 0.91990 1.01360 1.91614 1.55527 1.77486 1.84623 1.21193 0.91143 1.00934 1.00682 1.20721 0.98437 0.95039 1.01015 1.21299 0.95616 0.94982 0.97071 1.19218 0.93529 0.92319 1.06664 1.20605 0.82951 0.85228 0.77022 1.90907 1.23960 1.69697 1.48020 1.86486 1.37870 1.32997 1.71360 1.23131 1.02346 0.83288 0.96716 0.90769 0.91696 0.91691 0.91740 0.91721 0.88087 0.87148 0.91636 0.84908 0.84993 0.84469 0.92585 0.88894 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.67 10.22 -39.24 -0.40 -7.07 16 4 C 0.45 9.43 7.83 36.01 0.28 9.71 16 5 O -0.49 -11.36 12.29 -24.40 -0.30 -11.66 16 6 C -0.09 -1.93 5.51 -27.88 -0.15 -2.08 16 7 C 0.21 5.27 2.04 -27.88 -0.06 5.21 16 8 H 0.05 1.26 5.33 -51.93 -0.28 0.98 16 9 C -0.59 -15.71 6.09 -34.44 -0.21 -15.92 16 10 H 0.07 1.99 6.78 -52.48 -0.36 1.64 16 11 C 0.03 0.76 5.45 -17.82 -0.10 0.66 16 12 N -0.89 -25.68 13.65 55.43 0.76 -24.93 16 13 Si 1.06 24.56 29.91 -169.99 -5.08 19.48 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 O -0.33 -8.43 7.15 -47.72 -0.34 -8.77 16 18 C 0.18 4.20 5.48 -38.62 -0.21 3.99 16 19 C 0.05 1.15 7.26 -39.34 -0.29 0.87 16 20 F -0.11 -2.63 14.25 2.25 0.03 -2.60 16 21 C -0.12 -2.08 10.01 -39.47 -0.39 -2.48 16 22 C -0.13 -2.07 10.02 -39.64 -0.40 -2.47 16 23 C -0.07 -1.24 9.61 -39.18 -0.38 -1.61 16 24 C -0.12 -2.49 5.87 -104.87 -0.62 -3.11 16 25 C 0.50 11.04 7.37 34.46 0.25 11.30 16 26 O -0.44 -10.85 11.91 -26.58 -0.32 -11.16 16 27 O -0.37 -6.91 9.83 -40.62 -0.40 -7.31 16 28 C 0.04 0.59 10.66 101.05 1.08 1.67 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 33 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 34 H 0.10 2.11 8.14 -51.93 -0.42 1.69 16 35 H 0.11 2.26 8.14 -51.93 -0.42 1.83 16 36 H 0.27 7.93 6.25 -40.82 -0.26 7.68 16 37 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.14 2.01 7.62 -52.48 -0.40 1.61 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.08 7.97 -51.93 -0.41 0.67 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -33.07 363.55 -6.30 -39.36 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.15 Total: 3.55 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -0.57 Total: 5.62 kcal Atomic # 7 Polarization: -25.68 SS G_CDS: 0.76 Total: -24.93 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -1.76 Total: -45.97 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.03 Total: -2.60 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.08 Total: 19.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.07 -6.30 -39.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233684088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.541 kcal (2) G-P(sol) polarization free energy of solvation -33.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds